si:ch211-113d22.2 (LOC106098714,LOC103357453,LOC102788116)


Basic Information

Item Value
gene id si:ch211-113d22.2
gene name LOC106098714,LOC103357453,LOC102788116
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18382949 ~ 18386253 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039803603.1
CACCTCAACCCCCGGTGTCCCCTCCATTAGATACTCCGCTCATCCATTCTTTCTCTGGATTCTGGAAGACGCAGTGACCATTGGCCAGCTGCCATGAAGACTGCCCTGGTCCTGCTGCTGCTCATCTCTCTGGCCTGCCACAGTGCTCTCTCCTGTTCTGTCTGTAAAGGCCACACCCTCAAATGTCACACGTGCGTGGCGTCCAATGATGACGACTGTAATCGACAGGGCTCCACCTCCTGCCCTCAGTACGCTGACGCCTGCTCCACCATCACAGGACCCAGCACCGTGATGAAGTCGTGCACGTACAAGGCTTTCTGCGACAAGGCTCATGGCGTCAGCTCCGGAGCAAAGATGGACTGCTGTTTTGGCGACGACTGTAATGGGCCCCACCGGAGCCACAGCCATGGGGATCACCATCGCAACGGCGCAGGGGCTGTGGCCTCCAGCCCTGTCCTGCTGATCACGGCCCTGCTGCTGCGTGTGGCCGTCAGTCAGCTGTAAACACCTCCACTTTTCTTTCCTCCAGGAATTCATTCATCCTCATTTGCTGGGTTGTCATCCATCCACCTTCTCCTCTTTGTCACTCTGTACCCCTCAGAGATTTTCAATCCAAGTTTACGAAAAGGATTTAAGTGGCATAGATTTCCCGTGGTttaagacaacaacaaaaaattggTTTCTGATGACTGTTGGTGAAGTGAAGGATGTCTGTCCCATAAATACAAGTTTCAGCACTTTAATTgtgtcatttttattattattatcaattaTCATCAAGAACTTGAATAGCAACCTCATTATCTATCGATTATCTATAGTGGTATGTTCACTTTCAGGTGATTTCAAGTTTTAAGAGTGTTTGTGGTGAATACGTGTGCGCAAAGTGAAGTAGACTTAGCCATGGTTTTTATTAAAGCAGGTGTGGTTTCGGTAGGTGCTAGGGTGCCTCAGTGGGTAGCTGGTGTGCAGCTCACTTGATGCCATAGAACCACATTATTCACTTGGGTTGTTAAAATGGTTACCAGAAAGTAAAGTATTTAACATATAACATCACAATCTTCATGAATTGTTTAAATATGTTAATGATGTGTTTAGTGCTTaatttttgtgtgcatgcaagCTTGTCTGATAAAAGACACAATCACACCCTTA
>XM_039803604.1
CTCAACCCCCGGTGTCCCCTCCATTAGATACTCCGCTCATCCATTCTTTCTCTGGATTCTGGAAGACGCAGTGACCATTGGCCAGCTGCCATGAAGACTGCCCTGGTCCTGCTGCTGCTCATCTCTCTGGCCTGCCACAGCCACACCCTCAAATGTCACACGTGCGTGGCGTCCAATGATGACGACTGTAATCGACAGGGCTCCACCTCCTGCCCTCAGTACGCTGACGCCTGCTCCACCATCACAGGACCCAGCACCGTGATGAAGTCGTGCACGTACAAGGCTTTCTGCGACAAGGCTCATGGCGTCAGCTCCGGAGCAAAGATGGACTGCTGTTTTGGCGACGACTGTAATGGGCCCCACCGGAGCCACAGCCATGGGGATCACCATCGCAACGGCGCAGGGGCTGTGGCCTCCAGCCCTGTCCTGCTGATCACGGCCCTGCTGCTGCGTGTGGCCGTCAGTCAGCTGTAAACACCTCCACTTTTCTTTCCTCCAGGAATTCATTCATCCTCATTTGCTGGGTTGTCATCCATCCACCTTCTCCTCTTTGTCACTCTGTACCCCTCAGAGATTTTCAATCCAAGTTTACGAAAAGGATTTAAGTGGCATAGATTTCCCGTGGTttaagacaacaacaaaaaattggTTTCTGATGACTGTTGGTGAAGTGAAGGATGTCTGTCCCATAAATACAAGTTTCAGCACTTTAATTgtgtcatttttattattattatcaattaTCATCAAGAACTTGAATAGCAACCTCATTATCTATCGATTATCTATAGTGGTATGTTCACTTTCAGGTGATTTCAAGTTTTAAGAGTGTTTGTGGTGAATACGTGTGCGCAAAGTGAAGTAGACTTAGCCATGGTTTTTATTAAAGCAGGTGTGGTTTCGGTAGGTGCTAGGGTGCCTCAGTGGGTAGCTGGTGTGCAGCTCACTTGATGCCATAGAACCACATTATTCACTTGGGTTGTTAAAATGGTTACCAGAAAGTAAAGTATTTAACATATAACATCACAATCTTCATGAATTGTTTAAATATGTTAATGATGTGTTTAGTGCTTaatttttgtgtgcatgcaagCTTGTCTGATAAAAGACACAATCACACCCTTA

Function

NR:

description
PREDICTED: activin receptor type-1C-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039803603.1 True 1155 mRNA 0.47 3 18382949 18386253
XM_039803604.1 False 1125 mRNA 0.47 3 18382952 18386253

Neighbor

gene id symbol gene type direction distance location
LOC120560725 NA coding upstream 354 18365745 ~ 18382595 (+)
ddhd2 ddhd2 coding upstream 25317 18345554 ~ 18357632 (+)
srrd srrd coding upstream 54412 18326964 ~ 18328537 (+)
LOC120560506 nefh,LOC102784691 coding upstream 71316 18306898 ~ 18311633 (+)
akr1a1a LOC103357443,LOC100534433 coding upstream 95667 18282370 ~ 18287282 (+)
si:ch211-204d2.4 plekha2 coding downstream 2858 18389111 ~ 18400741 (+)
cfap73 NA coding downstream 46564 18432817 ~ 18437190 (+)
si:dkey-98f17.5 LOC103357465,LOC102303189,LOC102202618,LOC102793122,LOC101475617 coding downstream 188735 18574988 ~ 18587715 (+)
p2rx2 p2rx2 coding downstream 251441 18637694 ~ 18642437 (+)
myo1ha myo1h,LOC104945027,LOC102796924 coding downstream 317879 18704132 ~ 18715310 (+)
G62508 NA non-coding upstream 61791 18320643 ~ 18321158 (+)
G62502 thoc5 non-coding upstream 68172 18313211 ~ 18314777 (+)
G62484 vcp,LOC102783844,LOC103357444,LOC107746855,LOC107393925 non-coding upstream 86046 18293260 ~ 18296903 (+)
G62406 NA non-coding upstream 255204 18127536 ~ 18127745 (+)
G62372 NA non-coding upstream 326800 18054799 ~ 18056149 (+)
G62540 NA non-coding downstream 71245 18457498 ~ 18459249 (+)
G62557 NA non-coding downstream 111710 18497963 ~ 18498301 (+)
G62558 NA non-coding downstream 112377 18498630 ~ 18498972 (+)
G62532 NA non-coding downstream 113625 18499878 ~ 18500121 (+)
G62559 NA non-coding downstream 113872 18500125 ~ 18500506 (+)
G62513 NA other upstream 51719 18330705 ~ 18331230 (+)
setbp1 setbp1,LOC102781608 other upstream 253880 18074768 ~ 18129069 (+)
thbs4a thbs4,LOC104953147,LOC106958346 other upstream 353563 18015405 ~ 18029386 (+)
cmya5 cmya5,LOC106958347,LOC104953151 other upstream 371919 17998686 ~ 18011030 (+)
tmem167a tmem167a,LOC103397084 other upstream 810244 17568013 ~ 17572705 (+)
tbx5b tbx5,LOC103470367 other downstream 21095 18407348 ~ 18419590 (+)
tpcn1 tpcn1 other downstream 55094 18441347 ~ 18474731 (+)
acacb acacb other downstream 274904 18661157 ~ 18685463 (+)
mvk mvk,LOC102798305 other downstream 351265 18737518 ~ 18742399 (+)
tmem119a LOC103353570,LOC104946818 other downstream 690308 19076561 ~ 19081654 (+)

Expression


Co-expression Network