smarcad1a (smarcad1)


Basic Information

Item Value
gene id smarcad1a
gene name smarcad1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 22791538 ~ 22811392 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039803609.1
ATGTTCAATTTAGACCGTTTTCGTTTTGACAAGAAGGCGGCGACGACAACAAACAAAGACCAGGATAGCGGATCCAATAGTCCAGAGTCTGAGAAGGAGAACAAGCCAGCTCAGATGAAACCTGTCAAAGCCTCACCAAAGCCCCATGCGCGAGGAGTGGTTTTTGAGGAAGTCCTTACAATTGACTTGGAGGAGGATGAGCTTCTCTCTGAAACAAAGACCAAAATTCCATTATCCAGGAAGTCCAAGAATCCCAAAGGGAAATCATCCCAAAATGTGACATCGGATTACACAGATGATGAGGACAAAGAAATGGAGGAGAACATGAACAGAGTACTGGAGATGTTTCCTCAGTTGTCAAGGACAGAGGTACTGGAGGTTATTAGGAGCACAAGCACATTGGATGGGGCTGTAGCTGCATGCCTTTTAAAGTTTGGTGATAAAGAAGCCACAGACCAAGGCAGGAAAAGAAAGCAGGATGGATCTAGCGGTTCTCAGGAAAGTGGTGAAATTCAACCCAGCAAGAAGAGAAGGTCATCAGTGGTTTctgaagaagatgatgatgacagCAAAGAGCCAAACTGGGAGAAGCAGGAAGCCATGGTCCGAAGACTGCAGAAAAAGTTTCCTGACCAGGACAAGGAGGAGCTGCGGATGGTGCTGCAGGAACACGACTGGAATGTTGACGATGCTCTGCAGGTTCTACAAATGTTCTCAGACCCAGATGCCAGTTTCAGCTCACCTGACACCGAAGAAAAGAAATCCATTAAATCGAAGAGCAAAGACAAGTCGAGCAAGGGCCACAGGAAGTTGACGCGCCACAAAGACCATGGAGACAGTACAAGTAGCAGAGGTCAAAACGACTATTCCGAAGACCATATAATTATTAGTGAAACTGAGGAGGACCGTATAGATGATTCAGATGCTACAAAGGACAGTGAAGACTCAGACAGTGAAGATTCCAAACACCGAAGTAGCACTTCCACTCTGTCAAACAGGCTTAAAAAAAGTTCTGACTCCgtatcctcatcctcctctgtcAAGAAAACGACTACCTCTTCCTCCCTGAAGccgtcctcttcttcctctgctGCTCAGATGCTGTCCAGATTTGCCAGTGGGACCAGTATAGCTAAGAAGCaggcagcagaaagaaagaagaaggcaCGCGCATCAGACGATTATGTCAGTTCTGAGGGGGAAAATGACGATGAAGAGGAGACAGTTAGTAGTGAGTTTGAGGACTCTGATGATGAGCTGGATTCTAACGGTGGAATGACAGATCTGAAGAAAGAGATACTCAAGTTTTTCCAGGATGCAACGATCGATGAGCTGTCTCTTATCGCTGGGTGCTCTGTTAAAAAGGCCCAGAAGATTGTGGAACTGAGGCCCTTTGATGGCTGGCAAAGCctgATTGATGTCTTCCATAAGGATAATGGACTGTCGGATGCCTTACTGCTGGGCTGCAGAGTCGTTCTCAAAGAGCGGCAGGTTGTCCTGGGGCTGATGTCCAAATGCAATACCATTTCCTCAAAAATGTTCAAACAGGTCACTCAGGTGATGGAGAGGGGCACAGGGTCCATGAAGCAGCCCAGTTTACTCAACAGTCAGTACCAGCTGAAACCTTATCAGCTGATTGGTCTAAAGTGGCTGCTTCTTCTGCATGAGCACAAACTGAGTGGTATCCTTGCTGATGAAATGGGTTTGGGAAAAACTATCCAGGCTATAGCGTTTCTGGCCCAGCTGTACCAGAATGGAATAGACGGTCCTCACCTCATCACTGTGCCGGCCTCTACATTAGATAACTGGGTCAGAGAGCTGAAGCTGTGGTGCCCAAGCCTCAAAGTGCTAGTCTATTGTGGATCTGTGGAGGACCGCCGCTACCTCAAACACGACCTCCTCAATGGAGATGATGAGTGCAACGTCATTGTGACAACGTATAACATGGCCATAGGAAATGCCAACGACCGAAGCCTTTTCCGTAAGCTGCGTCTGAAGTATGCTGTGTTTGATGAAGGTCACATGCTGAAGAACATGAACTCTCTGCGCTACCGCCATCTTATGGATATTAACGCTGAGCATCGCTTGCTTCTGACAGGAACTCCTTTACAGAACAACCTCTTGGAGCTGATGTCTCTCCTGAACTTCATCATGCCTTCCATGTTCTCCAGCTCCACTACACAGCTCTCCAAAATGTTttctatgAAATCCCATGAGGAGCAGAGCCGCTTTGAGAGGGATCGTATTTCTCAGGCCAAACTCATCATGAAACCTTTTATCCTCCGAAGAGTGAAGAGCGAGGTCCTCAAGCAGCTGCCAGCCAAGGAAGAGCGGGTAGAGTCCTGCCCGATGAGTGAGAAACAGCAGGTTCTCTACCAGACCCTCTTAAATAAACTCAAGGCTTCAGCCAATGGTGAAAAACACGAGTTGTGTAATGTGATGATGCAGTTGAGGAAGATGGCCAACCACCCTCTGCTTCATAGACAGTACTACACCACAGAAAAGCTCAAAGCCATGAGCAAACTCATGCTCAAGGAGCCAACTCACTTTGATGCAGATGCTGCTCTGATCCAGGAGGACATGGAAGTGATGTCAGACTTTGAGCTGCATCGTCTGTGCCAGCAGTACTCCTCTATCAGCTCCTACCAGCTTGAAAACAATCTCCTGCTTGACTCTGGGAAATTCCTCctcctcacagagctgctggcCTCACTTAAAACCAAGGGAGACCGAGTGGTATTATTCAGTCAGTTCACCATGATGCTGGACATTGTGGAGGTGCTGCTGAAACATCTTAAGCATCGTTATGTCCGACTGGATGGATCCACACCCATAGCCAACAGGATTGTGTTGATTGATGAGTTCAACACGGATCCTGACATATTTGTGTTCCTGTTGTCAACACGTGCTGGCGGCCTGGGAATCAACCTCACCTCCGCTAATGTTGTCATCCTTCATGACATCGACTTCAATCCCTACAATGACAAACAGGCAGAGGACAGATGTCACCGCGTAGGCCAGACCAAGACTGTACAGGTGATTAAGCTGATAAGCAAGGACAGCATAGATGACTGCATGCTGCAGCTGAGCCAGAAGAAACTAAAGCTGGAGCAGGACATGACTACTGCTGACGGTGGTGGTGAGGGGACCATACCTGAAGATATGGCATCTTTGCTCAAAGCCTCACTAGGACtgtgatacacaaacacatgaaacTTGActgtacaaatacatttttgataGCAATCTTGTGATTCTGGGCAGACTTGAGTGTTctgactgaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgtacgtctATACTGGGAAACTACTGAGACCATATGCTGCCATGAAACAAAGTTTTGATGTTGAGATCTGATTTACTGTGTAGCATGTTAGCTGTGCCTAAAACACTATtttttacatgcacacagtttTTGCTTCTACTTTGATTATGAGATCAGTATATAAAGGCTAAACAAAAATGTTGCCTTTTTAAAATTGCAACATGTTATCCAAGGTTACTTTGTAGAAACTTGAAAGTGGTGTTTCAAAGTTAAGACCCAACCGTCAGTAATGCAGCATGTGGTGGAGTACCCCATGGTACTTGTTTGGACAAAAGTATCTGAATTTCACATAAGCCATGCAGTCTTATATTGTTCACATTCTGATAAAGGGGGCTGTATGTTGGTAAGGAAAAGTATGCCTACTGCTTATTAACACTTAACATAAAGTTCTAGCACGGAAATTGTGCAGAGATGGAGAATGGTTGATTTTTATACTATCCTTCCTACCTGACAGTGTTGGATCTTGCCTAATATACATGCTCTTACTTAAAAAGCCagctcttaaaaaaaagaaaaatggtttACATCAGAACTTTTGTTGCTCCTGTAATCCACAGCAACATTGTAACAGCAGCAGATGATGACCACTTCACAGAAAATGTTGCTGTTCACATTGATTAGTTTTGATACCATTCCCAATCAAACGGTTTTGACAGTTGTGGTTGCATTAGAAAGTAAGCCAAGTATCTATGTCAAGGTTTGTCGTATACCCTATATATTTTAAGGCAATTTTCTTGGAAAATGCAGGAGATACATGGTTGTGTCAGTGTAGTCAGTGAAGTTAGTACAGTTTTTCTAGTTTGTAAAACTAGATAAACAAAATATGGAATGTTTAATAAGAACGATTTTTGAATTGGTTTCTTTGCTGTTTCTACTCCTTTTAAATATCTTGAGCTAAGCGACACAGAGATGATGATTTAATGCAGCAGCTGCATTCATGTACTGTGTAAGTGGCTAATGTGTTGTAAGTGTACACGTGTAAGTGAAAAGCTTTTACTAAGTCATTTGTATGTTTATAAAGGTTCCTgtttgaacaaaaaaaataaaggttggAATAAAA

Function

symbol description
smarcad1 Enables DNA binding activity. Involved in several processes, including DNA double-strand break processing; chromatin organization; and chromosome separation. Located in nuclear replication fork; nucleoplasm; and site of double-strand break. Implicated in BASAN syndrome and adermatoglyphia.

NR:

description
PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1

GO: NA

KEGG:

id description
K14439 SMARCAD1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039803609.1 True 4469 mRNA 0.44 23 22791538 22811392

Neighbor

gene id symbol gene type direction distance location
atoh1a NA coding upstream 30701 22758111 ~ 22760837 (+)
grid2 grid2,LOC102784241 coding upstream 36788 22123035 ~ 22754750 (+)
ccser1 ccser1,LOC102783788 coding upstream 670223 21991353 ~ 22121315 (+)
trim36 trim36 coding upstream 801956 21955578 ~ 21989582 (+)
pggt1b pggt1b coding upstream 839625 21937000 ~ 21951913 (+)
tspan36 LOC104956296 coding downstream 15234 22826626 ~ 22835070 (+)
mapk4 mapk4 coding downstream 29110 22840502 ~ 22861873 (+)
me2 me2 coding downstream 51192 22862584 ~ 22883874 (+)
elac1 elac1 coding downstream 73196 22884588 ~ 22891019 (+)
ndufaf2 ndufaf2 coding downstream 445869 23257261 ~ 23273702 (+)
G63792 NA non-coding upstream 641414 22131884 ~ 22150124 (+)
G63715 NA non-coding upstream 915851 21875445 ~ 21875687 (+)
G63714 NA non-coding upstream 946400 21844832 ~ 21845138 (+)
LOC120560273 NA non-coding upstream 1170827 21608823 ~ 21620711 (+)
G63872 NA non-coding downstream 92643 22904035 ~ 22905966 (+)
G63914 NA non-coding downstream 175789 22987181 ~ 22988040 (+)
LOC120560300 NA non-coding downstream 408458 23219850 ~ 23245368 (+)
G63976 smim15,LOC106580593,LOC103398561 non-coding downstream 463528 23274920 ~ 23281109 (+)
G64026 NA non-coding downstream 619298 23430690 ~ 23432473 (+)
LOC120560787 NA other upstream 1192249 21588876 ~ 21599289 (+)
G63480 rbm19 other upstream 2113622 20676417 ~ 20677916 (+)
wdr31 wdr31,LOC102796061 other upstream 2300952 20473651 ~ 20490586 (+)
vps13a vps13a other upstream 2349445 20400947 ~ 20442093 (+)
c6h2orf68 c21h2orf68,c9h2orf68,LOC104941594,LOC103363183,LOC104920309 other upstream 3028014 19759596 ~ 19763524 (+)
G63905 NA other downstream 118507 22929899 ~ 22930205 (+)
LOC120560905 clg12h9orf3,LOC103358904,LOC102294417,LOC101470200,LOC102214270 other downstream 676575 23487967 ~ 23562285 (+)
G64108 NA other downstream 881270 23692662 ~ 23693291 (+)
prxl2c aaed1 other downstream 2009922 24821314 ~ 24823066 (+)
cdc14b cdc14b,LOC102776968,LOC103141798,LOC106948523 other downstream 2012326 24823718 ~ 24837448 (+)

Expression


Co-expression Network