LOC120560772 (pdxp,LOC102792570)


Basic Information

Item Value
gene id LOC120560772
gene name pdxp,LOC102792570
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 25655685 ~ 25659461 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039803612.1
TGGGCGTGGTTGGAGGTCAATTGTTTATGTAGCTCGCTGTCCGTGTATGTAACCGCACCAAGCAAGGACTCCGCAATGTGATTTCCTGACGTTGATTTGTTTTCATATCGTTTTACCAGCTGGCTTTACCACATTATGCACCAGCCGTTGACATGGGGAACCACTAGCAGGTGAAACACGGAAGAAACCGAGGGAAAAGCCGGAATGGCAGGCGCCTTCAAAGGCTGCCAGAAAATTAGAGGTCCGCAGATTAGAAATCTGCTTGACGCGAAGGACTTCATTCTCCTCGACTGCGACGGGGTCATATGGCACGGAGAGAAGGCGATAACGGGCGCGGCGAAGGTGGTGAATTCGCTGATACGGCACGGCAAAAACGTAGTGTTCGTCACCAACAACTGCACCAGGCCCCGGGAGAATTATGTGCACAAGTTCTGCCGGCTGGGCTTCACCGACGTGATACTAGAGCAGATCTTCAGCTCGTCGTACTGCTCGGCTCTCTACCTGAGAGACGTCGTCAAGATCCGCGGCCAGGTGTTTGTCATGGGCTGCGACGGACTGCGCAGAGAGCTGGATGAGGCGGGCATCCCCTGCGTAGAGGAGGCGGACGATCCGGACGCCACCATCTACGACTGCGCTCTGGCTCCGGACGTCAAGGCAGTGCTGGTGGGACATGATGATAAAATGACTTTTCTCAAACTGGCCAAAGCCTCGTGCTACCTGAGAGACCCGGACTGTCTGTTCCTGGCTACCGACAACGACCCGTGGCACCCTCTGTCTAGTGGAAGGATACTGCCAGGTTCCGGGTCCCTCATTGCAGCCCTGGAAGTGTCCTCAGGTCGCAAGGCCACTGTGATCGGTAAGCCTAGCCGCTTCATGTTCGAGTGCATCTCCAGTCAGTTCAGTGGGGTGGACCCCGCCCAGTGCCTGATGATTGGGGACCGCCTAGAGACAGACATGCTGTTTGGATCCAACTGCGGCCTCGACACCATGCTCACTCTCACCGGTGTGTCTCAGATCGAAAAGGCCCAGGAGTACAGGAATAGTGAGCTGAGCACCAACCACAGCTTGGTGCCCGATTACGTGGTGGACACCATTGCTGATTTCTTACCTGCTTTTGAGGAACTGGGCGAACCGAGCAACTGATGAGTCCTTTCGCCTCCAGTACAGAGCATAGATTGCTTCTACTGCAAGTACAATGCTTAGTCTggcatttgcaaaaaaaaatacctaTCAATTATCAAAAACAAGAAAGATTCCTCAGTAACAAGGCGCTGTTGATGTTGACCAAGACATGCATAGGAGAGAATataaaataatcagtaattCAGCGCATACCTCATTGTGTCTTCTAGTGTTGTGCCCATTTGTGACTTGACAGTTCCTTGTTGCTGTAAGTGTTTATAGTAATATATGAATATACTGCACTCTCTTCTTCAAAAAGTTAATCGGTCGTGTTTGATATTAGGTTTTGAACATCCAGAGGTATTTTTGTAAAGCCACGAATTGTTCTGTAACGGCATTAATGTGTTTAGGAGCTGgttagtgggttttttttttttgttttttgccagAAGGCAGACATGTACTTGCAGAATTGTTTCCTCATATGTTATTGCCTGGGTGTGACTTCTCCTTGATAAATTCATGGCAAGAGGAGATAATTAAAAACTGAACTTTTCTCATCTCTGATGGAGACTAAGATGACAATCTGCCAGTCAGACAGGTGAAGTGTATATTCACCTTTCTGTCACATCTGTACTACTTGTGCCAATATTCATCCGAGTACTTAACTGCTTACTAAATCTCATAGTTAGAAAACCAGTTACACATTAATGGTGGCCGGTCATACTGCTCTGTTGTGAAATTTCAATGTTAATGATTACCATATAGAGCATGCCAGCAACGGTAACCACAATAAATACCTAAAATAAATCCTTAA

Function

symbol description
pdxp Predicted to enable glycerol-3-phosphatase activity. Predicted to be active in cytoplasm. Orthologous to human PDXP (pyridoxal phosphatase).

NR:

description
PREDICTED: pyridoxal phosphate phosphatase

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0016791 phosphatase activity molecular_function

KEGG:

id description
K07758 PDXP; pyridoxal phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039803612.1 True 1939 mRNA 0.48 2 25655685 25659461

Neighbor

gene id symbol gene type direction distance location
LOC120560771 ugt3a2,LOC108233592 coding upstream 2529 25647115 ~ 25653156 (+)
spef2 LOC104950669 coding upstream 9208 25626004 ~ 25646477 (+)
LOC120560598 NA coding upstream 33634 25601156 ~ 25622051 (+)
cdo1 cdo1,LOC102791980 coding upstream 82578 25567704 ~ 25573107 (+)
sema6a sema6a,LOC102790561 coding upstream 210545 25336024 ~ 25445140 (+)
LOC120560092 LOC101464110,LOC102227132,LOC106956827,LOC106513657,LOC105931341,LOC103374419,LOC101075487 coding downstream 97627 25757088 ~ 25762906 (+)
LOC120559963 LOC100704176,LOC102304428,LOC102794704,LOC102195896,LOC101487439 coding downstream 114917 25774378 ~ 25784037 (+)
LOC120560362 izumo1 coding downstream 280315 25939776 ~ 25949337 (+)
dusp2 dusp2,LOC106948589,LOC103145864,LOC102224120,LOC103470063 coding downstream 289993 25949454 ~ 25952579 (+)
adra2b LOC104943288,LOC102796455,LOC102308546,LOC103357149,LOC102212827,LOC100694621,LOC101484392,LOC105931407 coding downstream 299338 25958799 ~ 25964487 (+)
G64495 NA non-coding upstream 99904 25552939 ~ 25555781 (+)
LOC120560635 NA non-coding upstream 103421 25548023 ~ 25552264 (+)
G64489 NA non-coding upstream 149117 25506164 ~ 25506568 (+)
G64450 NA non-coding upstream 352765 25259716 ~ 25302920 (+)
G64392 NA non-coding upstream 445515 25209924 ~ 25210170 (+)
G64578 NA non-coding downstream 3566 25663027 ~ 25663385 (+)
G64592 NA non-coding downstream 37602 25697063 ~ 25699784 (+)
LOC120560927 NA non-coding downstream 54449 25713910 ~ 25747889 (+)
G64607 NA non-coding downstream 128996 25788457 ~ 25795441 (+)
LOC120560032 NA non-coding downstream 179675 25839136 ~ 25843093 (+)
cdc14b cdc14b,LOC102776968,LOC103141798,LOC106948523 other upstream 818237 24823718 ~ 24837448 (+)
prxl2c aaed1 other upstream 832619 24821314 ~ 24823066 (+)
G64108 NA other upstream 1962394 23692662 ~ 23693291 (+)
LOC120560905 clg12h9orf3,LOC103358904,LOC102294417,LOC101470200,LOC102214270 other upstream 2093400 23487967 ~ 23562285 (+)
G63905 NA other upstream 2725480 22929899 ~ 22930205 (+)
LOC120561182 LOC104948667,LOC104930137,LOC103397628,LOC103366370,LOC107092578,LOC102226292,LOC106956829,LOC106919698,LOC103470079,LOC103141747 other downstream 25503 25684964 ~ 25696576 (+)
LOC120560031 LOC104941040,LOC103357154,LOC102795853 other downstream 254818 25914279 ~ 25915577 (+)
LOC120560359 NA other downstream 266626 25926087 ~ 25928596 (+)
nsd3 whsc1l1 other downstream 699659 26359120 ~ 26383843 (+)
G64814 cldn5,LOC103357131 other downstream 753408 26412869 ~ 26414597 (+)

Expression


Co-expression Network