arid3c (LOC103046366,LOC105901092,LOC107676636,LOC107552548,LOC108438346)


Basic Information

Item Value
gene id arid3c
gene name LOC103046366,LOC105901092,LOC107676636,LOC107552548,LOC108438346
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 3688045 ~ 3775673 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039803625.1
TCTGCCTCCAGAGGTCATTCTCACTACAGTTGCCACTTGTTGCCAAAGCAGCTCGGGGCTCCACCATTCAACACCAAACTGATTTCAAGTATTTATTCAGCCTAACTATCGAGACCGACATATTTGGATGCTGAATGCGGAACGTGGCCAGGACTGAAGGAAGACTCGCGTGATCCGGTAGATAACATTTCGGCGCATCCGACGGAGAGAAGCATGGTTGATAACGCAAGTATAGCAACTAAATCTGCTTTGCAAGGCTCTTTCTCGCCCGCCAGTAGCATTCCCATCCCGGCTCCCTTCCCCGGCGTCCAGTCCCAGCAGCCCGCCAGCGGCGGCATGAAGCTCGAAGCGGTCATGGAGAACCTGCAGCGGCAACAGGCAGCGCGGCTGGCCCTGGAGGAGAAGCTCCGGCAGGCggagacagagaaagacctCCGCTCCATGGCCCTGGAGGAGAAGCTCCGGCAGGCggagacagagaaagacctCCGCTCCATGGTGGAGTCGCAGATCCACCAACAAGCGCTGGCTTTCCGACACTACCAGGCGGCGATGCGAGGCGCTCTGGCCGCCGGAGTTGCCAACTCGTCGCTCCCACACATGGAGGTCCGCAGAGCCGCCGAGGACGGGACCTCCTCCAGACCGGGCAGCGACGGTAAGGACCGGGAAGAGGAGGGAGACGACATGGAGGAGCAGGACATCatggatgaagaggaggaggaggagggcgaaGATGATGTCGGGTTGAACCACTACCAGCACCGGGCATCCTCGCTCCAGGGAGTCGGTCTGCCTCCTAAGAGCGGCCCGATGCATCTCATGGCCAGAGTCCCGGCAGCCTATGCCCCGGCCCGCCGCGCAGAGTCTCCCTTGGCCCCGCAGCCCCAGCACCACGACTGGACCTATGAGGAGCAGTTCAAACAGCTGTATGAATTGGATGATGATGAGAAGCGCAAAGAGTTTCTTGATGACCTTTTTACTTTCATGCAGAAACGAGGGACTCCAGTGAATCGGATTCCTATCATGGCCAAGCAGGTGTTGGATCTCTACATGCTCTACAAGCTCGTCACAGAAAAAGGCGGCTTAGTGGAAGTCATCAATAAGAAAATATGGCGTGAGATCACCAAAGGCCTTAACCTCCCTACCTCCATTACCAGTGCAGCTTTCACTCTCCGAACACAGTATATGAAGTACCTCTACCCGTATGAATGTGAAAAGCGGGGACTGAGCTCCCCCGGGGAGCTTCAGGCAGCTATCGACAGCAACCGGCGGGAAGGCCGTCGGCAGAGCTACGGCTCGGCCATCTTCAGCTACTCCCCCGTGGGCACCCCCACCCTCCTGTCCTCGCCAAAGATGCACATGTCCCACCTGTCTCTGCCCACGCACAACAGTGGCCACATCTCCCACGTGCCTGTCATCAAGAAAGAGGAATCCATGATGGCCAGCTGCCTGCCCAGCCGGTTGGCCCTCCCCATGTCACCCAGCGGCCATCACGCAGCAGCCGTGGCCGCCCAGGCAGCCGCAGCCCAGGCCGTCCAGGCCGCGGCCCTGGAACAGCTCAGAGAGAAGCTGGAGAGTGGTGAACCACCagagaagaagatgatgatggtGGCAGAGGAGCAGCAGAGGATGATGCAACACGCCCTGCAGCAGAACCTGCTGGCCATGGCCACGCAGCTGCCCCTCAACATCAAACTCAACAACAGAGATGATAGACAAGAGACCGCATTGAACCTGTCTACCAACGGCATTAGCAGCATCAACATGTCAATAGAAATAAATGGAGTTGTCTACACAGGAGTCCTGTTTGCTCGGCAGTCGGCCATCGCAGCGATGGCGGGACACCGCGGGAGACACAGCAGCTGTCAGACTCAGGGAAAGAGCAGTCCCACGCAGTTCCAgccctcctgctcctcctcctcgtcctcctcctcttcctcgctCCGCGGACACAGAAACTCCTCCCCCTGAGTTTCCTGTCCCTCCTCCCACCCCAGATCCGTTCTCTCCTCAAAGACACAAAGCAGTCGGAGACATGTCCATCGTTGTTTTTCAAGGTGGctgtctctccatctcctcgATCCGAGTCCTTGTAGGTCAGCTAACGTCACAttgaaaagcagcaaatatatttacaggtgAGATATCTGTTCCAGtcgcccccccacacac
>XM_039803627.1
TCTGCCTCCAGAGGTCATTCTCACTACAGTTGCCACTTGTTGCCAAAGCAGCTCGGGGCTCCACCATTCAACACCAAACTGATTTCAAGTATTTATTCAGCCTAACTATCGAGACCGACATATTTGGATGCTGAATGCGGAACGTGGCCAGGACTGAAGGAAGACTCGCGTGATCCGGTAGATAACATTTCGGCGCATCCGACGGAGAGAAGCATGGTTGATAACGCAAGTATAGCAACTAAATCTGCTTTGCAAGGCTCTTTCTCGCCCGCCAGTAGCATTCCCATCCCGGCTCCCTTCCCCGGCGTCCAGTCCCAGCAGCCCGCCAGCGGCGGCATGAAGCTCGAAGCGGTCATGGAGAACCTGCAGCGGCAACAGGCAGCGCGGCTGGCCCTGGAGGAGAAGCTCCGGCAGGCggagacagagaaagacctCCGCTCCATGGCCCTGGAGGAGAAGCTCCGGCAGGCggagacagagaaagacctCCGCTCCATGGTGGAGTCGCAGATCCACCAACAAGCGCTGGCTTTCCGACACTACCAGGCGGCGATGCGAGGCGCTCTGGCCGCCGGAGTTGCCAACTCGTCGCTCCCACACATGGAGGTCCGCAGAGCCGCCGAGGACGGGACCTCCTCCAGACCGGGCAGCGACGGTAAGGACCGGGAAGAGGAGGGAGACGACATGGAGGAGCAGGACATCatggatgaagaggaggaggaggagggcgaaGATGATGTCGGGTTGAACCACTACCAGCACCGGGCATCCTCGCTCCAGGGAGTCGGTCTGCCTCCTAAGAGCGGCCCGATGCATCTCATGGCCAGAGTCCCGGCAGCCTATGCCCCGGCCCGCCGCGCAGAGTCTCCCTTGGCCCCGCAGCCCCAGCACCACGACTGGACCTATGAGGAGCAGTTCAAACAGCTGTATGAATTGGATGATGATGAGAAGCGCAAAGAGTTTCTTGATGACCTTTTTACTTTCATGCAGAAACGAGGGACTCCAGTGAATCGGATTCCTATCATGGCCAAGCAGGTGTTGGATCTCTACATGCTCTACAAGCTCGTCACAGAAAAAGGCGGCTTAGTGGAAGTCATCAATAAGAAAATATGGCGTGAGATCACCAAAGGCCTTAACCTCCCTACCTCCATTACCAGTGCAGCTTTCACTCTCCGAACACAGTATATGAAGTACCTCTACCCGTATGAATGTGAAAAGCGGGGACTGAGCTCCCCCGGGGAGCTTCAGGCAGCTATCGACAGCAACCGGCGGGAAGGCCGTCGGCAGAGCTACGGCTCGGCCATCTTCAGCTACTCCCCCGTGGGCACCCCCACCCTCCTGTCCTCGCCAAAGATGCACATGTCCCACCTGTCTCTGCCCACGCACAACAGTGGCCACATCTCCCACGTGCCTGTCATCAAGAAAGAGGAATCCATGATGGCCAGCTGCCTGCCCAGCCGGTTGGCCCTCCCCATGTCACCCAGCGGCCATCACGCAGCAGCCGTGGCCGCCCAGGCAGCCGCAGCCCAGGCCGTCCAGGCCGCGGCCCTGGAACAGCTCAGAGAGAAGCTGGAGAGTGGTGAACCACCagagaagaagatgatgatggtGGCAGAGGAGCAGCAGAGGATGATGCAACACGCCCTGCAGCAGAACCTGCTGGCCATGGCCACGCAGCTGCCCCTCAACATCAAACTCAACAACAGAGATGATAGACAAGAGACCGCATTGAACCTGTCTACCAACGGCATTAGCAGCATCAACATGTCAATAGAAATAAATGGAGTTGTCTACACAGaATTATTCAGTTACCCAGAAGTTTTGATCACCTGTTATATTTACGTACATACAAAGTCAAACCAGTTTTATTGATTGTCATAATAATCACAAACCTGCACAGCGTAcgacaaaaaaagagagaagccTCGGGAGGAGGATGTCTCCTCCAGGACGGAAAGAAATACAATAGATGACATCAGTACAAAGTAgacagtagtagcagtagtcaAACCAGACCAAATGATGATGTTATGTAAATAAAGTACATGACATATAATATTAACTATATATTGTAACAATGCTTCCCCTCAATGCTAAACTTAACTATACACACTCACTGACCTGCTGAACATACTTGTAGTGGAAAGGCCTGCTCTGTTAAAACTGCAGTTACAATATTAGTATTTAAACTATTATATTTAAGCCATTAAACATATTTTGAATTATTGCATCTTTCAAATGATTCtgacaacatacatatatatttttgatattaTCACTGGAGGACAATACAGCAGGGCGTTTTCTAATCCTGCACATAGTGACTTCAAAGAGCAATTTAACACTAAAGCCACATCAAGGCTTTGAGTTGTAAATTCTATGCACAGTCACCGTATGATATTTCACACGCAGCCTGGTCCCAGCCAGTACTTTGCCTTTTCCCAGCGAAAGTCCAGTAATTCTGCCGTCTAgatcagggatcttcaacaaggggtcctcagagttactgcaggtgGGCCGCCAAATTATCGTTAGTTTTTTgaaagtttagaaaaaagactaaaatgtcaTAACATGTatctaacatattattagcaaatacaaATGGGAAAAAcccat

Function

NR:

description
AT-rich interactive domain-containing protein 3A-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039803625.1 False 2172 mRNA 0.58 8 3688045 3775673
XM_039803627.1 True 2619 mRNA 0.51 8 3688045 3773518

Neighbor

gene id symbol gene type direction distance location
mamdc2a mamdc2 coding upstream 12820 3630736 ~ 3675225 (+)
fam189a2 LOC104953220 coding upstream 140712 3525307 ~ 3547333 (+)
fxn fxn coding upstream 304465 3375881 ~ 3383580 (+)
hmgcra hmgcr coding upstream 316545 3358143 ~ 3371500 (+)
zfr zfr,LOC103397483,LOC102308294 coding upstream 417938 3247454 ~ 3270107 (+)
LOC120561175 ube2l3,LOC106562742,LOC104961333,LOC107396654,LOC102226353,LOC107088009,LOC108248341 coding downstream 42649 3818322 ~ 3827427 (+)
rad17 rad17,LOC102794325 coding downstream 72806 3848479 ~ 3868576 (+)
ccdc125 NA coding downstream 93360 3869033 ~ 3889655 (+)
si:dkey-3h3.3 NA coding downstream 423850 4199523 ~ 4208499 (+)
LOC120560812 thg1l,LOC106912903,LOC103154062 coding downstream 450363 4226036 ~ 4227032 (+)
G58948 NA non-coding upstream 81736 3606062 ~ 3606309 (+)
G58944 NA non-coding upstream 131866 3547808 ~ 3556179 (+)
G58941 NA non-coding upstream 164424 3522846 ~ 3523621 (+)
G58900 NA non-coding upstream 183296 3504451 ~ 3504749 (+)
G58899 NA non-coding upstream 192146 3495104 ~ 3495899 (+)
G58986 NA non-coding downstream 23365 3799038 ~ 3803097 (+)
LOC120561177 NA non-coding downstream 61634 3837307 ~ 3837679 (+)
G59033 NA non-coding downstream 115372 3891045 ~ 3891853 (+)
G59032 NA non-coding downstream 119997 3895670 ~ 3896241 (+)
G59042 NA non-coding downstream 185387 3961060 ~ 3961319 (+)
LOC120560521 tjp2 other upstream 165289 3435165 ~ 3522756 (+)
lman2lb NA other upstream 804184 2878374 ~ 2883861 (+)
dock5 dock5 other upstream 1375380 2273678 ~ 2312665 (+)
lmx1bb lmx1b,LOC102213269,LOC100696266 other upstream 2850184 789405 ~ 837861 (+)
LOC120560799 NA other upstream 3475662 210742 ~ 212383 (+)
G59086 NA other downstream 341606 4117279 ~ 4117631 (+)
G59172 sub1 other downstream 648468 4424141 ~ 4429981 (+)
trnal-aag_1 NA other downstream 656498 4432171 ~ 4432253 (+)
trnaq-uug_2 NA other downstream 656995 4432668 ~ 4432739 (+)
mrpl41 mrpl41 other downstream 754381 4530054 ~ 4531165 (+)

Expression


Co-expression Network