top3b (top3b)


Basic Information

Item Value
gene id top3b
gene name top3b
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 10986105 ~ 11091962 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039803629.1
ATAGGGTTTACTGTCATGGCCACTCGTGGTTCCTAAAACAGTATTTTAGCAAGCAATTATATCCAAAATTAACAATTTTCTTTATCGTGGAGTGGTTGTTGATAGAACCCATTAATCAGGTTTAAAGTAGTAACGTTAAGAGTGCTTGTGAGCTGAGTTTGATAGTGGAGCTGTTCGCACTTCATTCAAAATGAAAACTGTTTTGATGGTGGCAGAGAAACCATCCTTGGCTCAGTCTATTGCCAAAATCCTCTCTAAAGGAAATTGTACAAGTCGCAAGGGGCTCAACGGAGCATGCTCAGTGCACGAATACACCGGCAGCTTCCAGGGCCAAACTGTACGCTTTAAGATGACTTCTGTTTGTGGACATGTGATGAGTCTGGATTTCATTGGGAAGTACAACAACTGGGACAAGGTGGACCCTGCAGAACTCTTTAGCAAAGCtctcacagaaaaaaaggaggcCAACCCCAAACTCAACATGGTCAAGTTCCTCCAGGTTGAAGCCAGAGGCTGTGATTACGTGGTGTTATGGTTGGACTGTGATAAAGAAGGCGAGAACATCTGTTTTGAGGTACTGGATGCCATTGAGCCAGTGATGAGCAAGGGGAGTGGCAGGGAGCGGAGTGTTTACCGTGCCAAATTCAGCTCCATCACTGACACGGATATCTGGAAAGCCATGAATGGCCTGGGAGAGCCCAACCGCAACGAAGCCCTGTCAGTGGATGCGCGTCAGGAGCTGGATTTGCGCATCGGCTGTGCCTTCACCCGGTTCCAGACCAAGTATTTCCAGGGTAAGTACGGTAATCTAGACTCCTCCTTGATCTCGTTTGGACCATGCCAGACCCCAACACTAGGCTTCTGTGTGGAACGCCATGACAAGATCCAGTCCTTTAAACCAGAGACTTACTGGGTCCTCCAGGCAAAGGTGTTTAAAGGAAAGGACAGCCCACTGACACTGGACTGGAACAGGGTGAGGGTCTTCGACAGGGAGGTGGGTCAGATGTTCGTCAACCTGACCAAGACATTTTGGGAGGCCCAGGTGGAGTCAGTGAGTAAGAAAGAGAAGGCTAAGCAGAGACCCCAGGCCTTGAACACAGTGGAGATGTTGAGAGTGGCCAGTTCTGCCTTAGGTATGGGTCCCCAGCATACCATGCAGATTGCAGAGCGTCTGTATACACAGGGCTACATCAGCTACCCACGTACTGAGACGACCCACTACCCAGAGAACTTCGACCTGAAGGGAACACTGGAACAGCAGACCAACAATCCCTTCTGGGCAGAGGAGGTGAAGGCTCTGCTTTCAACTGGATTAAACCGACCCAGGAAAGGAACTGATGCTGGAGACCATCCACCTATCACTCCCATGCGTGCTGCCTCAGAACGGGAACTGGGAAGTGATGGCTGGCGGCTATACGATTACATCACACGGCATTTCATTGCCACTCTCAGTCAGGATTGCAAATACCTACAGACCACCATAGACTTCAACATTGGCACAGAGGCCTTCTCATGTAGTGGCAAAACCCTAATATCACCAGGTTACACAGCAGTGATGCCGTGGCAGGGAATTCCTCTTGAAGAGGCAATGCCAGCTTGTGAGCGTGGAGAAACATTCACAGTAGACGAGATTAAGCTTTTGGAAAAGCAGACCAGCTCCCCAGACTACCTGACCGAGGCCGAACTCATCACCCTCATGGAGAAACATGGCATTGGTACTGATGCCAGCATCCCTGTCCACATAAACAACATCTGCCAGAGGAACTATGTGACTGTAGAGAATGGACGCAAGTTGAAGCCAACCAACCTAGGCATTGTCCTGGTACATGGCTACTACAAGACAGATGCAGAGCTTGTGCTGCCCACCATACGTAGTGCTGTGGAGAAGCAGCTAACCCTTATCTCTCTGGGTAAGGCGAACTACCAGCAAGTCCTGCAGCATACGCTGGATATCTTCAAGAGGAAGTTTCACTACTTTGTGGATTCCATCCCCAGCATGGATGAGTTGATGGAGGTCTCCTTCTCCCCAATTGCTGCCACTGGGAAGCCCCTGTCCCGCTGTGGCAAGTGCCACCGCTTCATGAAGTACATCCAGGCCAAGCCCAGCAGGCTCCATTGCTCCCACTGTGACGAGACCTACAGTCTTCCCCAGAATGGAGCCATCAAGCTGTACAAGGAACTCCGCTgtccactggatgactttgagCTTGTGCTGTGGACCTCCGGAGCCCGGGGCAAGAGCTACCCCCTTTGCCCGTACTGCTTCAGCAATCCACCTTTTAGGGACATGAAGAAAGGTATGGGATGCAATGAATGTACACATCCATCCTGTCAGCACTCTCTGAACTCGTTAGGCATTGGGCAGTGTGTGGAGTGTGATAGTGGGGTTTTGGTGCTGGATCCCATTTCTGGACCAAAATGGAGGATGGCCTGTAATAAGTGCAACGTTGTGGTGCACTTCTTTGAACATGCACACAGAGTGCAGGTTGCTCAGGAGAGCTGCGATGCCTGCGATGCCTCTCTGGTCGCCGTAGACTTCAACAAGACTCGCACTCCACTTCCTGCCGGCGAGACCCAACACACAGGCTGTGTTTTCTGTGATCTGGTCTTCCAGGACCTGGTGGAGCTCAAACATGCCACCATGAGGCACCGGGGTGGGGGGGCGAGAAGAGGACGGGGAAGGGGCAGGGGACGTCGTGGCAATCCTAAAAAACCTAAAGACAAAATGGCTGCCTTGGCAGCCTACTTTGTATAGTGTCTGTGCATAGTGTGTCCTTGTTATTTGTTGACAATAGTATGAAGGTGTATGTCAGTAAATGGACTTCTGTTTTTTCATGTGTATCTAATTACACTGaagtaaaatatacatttaaaaatc
>XM_039803630.1
GGAAGAGGATATGTCTATGGAAATTGTACAAGTCGCAAGGGGCTCAACGGAGCATGCTCAGTGCACGAATACACCGGCAGCTTCCAGGGCCAAACTGTACGCTTTAAGATGACTTCTGTTTGTGGACATGTGATGAGTCTGGATTTCATTGGGAAGTACAACAACTGGGACAAGGTGGACCCTGCAGAACTCTTTAGCAAAGCtctcacagaaaaaaaggaggcCAACCCCAAACTCAACATGGTCAAGTTCCTCCAGGTTGAAGCCAGAGGCTGTGATTACGTGGTGTTATGGTTGGACTGTGATAAAGAAGGCGAGAACATCTGTTTTGAGGTACTGGATGCCATTGAGCCAGTGATGAGCAAGGGGAGTGGCAGGGAGCGGAGTGTTTACCGTGCCAAATTCAGCTCCATCACTGACACGGATATCTGGAAAGCCATGAATGGCCTGGGAGAGCCCAACCGCAACGAAGCCCTGTCAGTGGATGCGCGTCAGGAGCTGGATTTGCGCATCGGCTGTGCCTTCACCCGGTTCCAGACCAAGTATTTCCAGGGTAAGTACGGTAATCTAGACTCCTCCTTGATCTCGTTTGGACCATGCCAGACCCCAACACTAGGCTTCTGTGTGGAACGCCATGACAAGATCCAGTCCTTTAAACCAGAGACTTACTGGGTCCTCCAGGCAAAGGTGTTTAAAGGAAAGGACAGCCCACTGACACTGGACTGGAACAGGGTGAGGGTCTTCGACAGGGAGGTGGGTCAGATGTTCGTCAACCTGACCAAGACATTTTGGGAGGCCCAGGTGGAGTCAGTGAGTAAGAAAGAGAAGGCTAAGCAGAGACCCCAGGCCTTGAACACAGTGGAGATGTTGAGAGTGGCCAGTTCTGCCTTAGGTATGGGTCCCCAGCATACCATGCAGATTGCAGAGCGTCTGTATACACAGGGCTACATCAGCTACCCACGTACTGAGACGACCCACTACCCAGAGAACTTCGACCTGAAGGGAACACTGGAACAGCAGACCAACAATCCCTTCTGGGCAGAGGAGGTGAAGGCTCTGCTTTCAACTGGATTAAACCGACCCAGGAAAGGAACTGATGCTGGAGACCATCCACCTATCACTCCCATGCGTGCTGCCTCAGAACGGGAACTGGGAAGTGATGGCTGGCGGCTATACGATTACATCACACGGCATTTCATTGCCACTCTCAGTCAGGATTGCAAATACCTACAGACCACCATAGACTTCAACATTGGCACAGAGGCCTTCTCATGTAGTGGCAAAACCCTAATATCACCAGGTTACACAGCAGTGATGCCGTGGCAGGGAATTCCTCTTGAAGAGGCAATGCCAGCTTGTGAGCGTGGAGAAACATTCACAGTAGACGAGATTAAGCTTTTGGAAAAGCAGACCAGCTCCCCAGACTACCTGACCGAGGCCGAACTCATCACCCTCATGGAGAAACATGGCATTGGTACTGATGCCAGCATCCCTGTCCACATAAACAACATCTGCCAGAGGAACTATGTGACTGTAGAGAATGGACGCAAGTTGAAGCCAACCAACCTAGGCATTGTCCTGGTACATGGCTACTACAAGACAGATGCAGAGCTTGTGCTGCCCACCATACGTAGTGCTGTGGAGAAGCAGCTAACCCTTATCTCTCTGGGTAAGGCGAACTACCAGCAAGTCCTGCAGCATACGCTGGATATCTTCAAGAGGAAGTTTCACTACTTTGTGGATTCCATCCCCAGCATGGATGAGTTGATGGAGGTCTCCTTCTCCCCAATTGCTGCCACTGGGAAGCCCCTGTCCCGCTGTGGCAAGTGCCACCGCTTCATGAAGTACATCCAGGCCAAGCCCAGCAGGCTCCATTGCTCCCACTGTGACGAGACCTACAGTCTTCCCCAGAATGGAGCCATCAAGCTGTACAAGGAACTCCGCTgtccactggatgactttgagCTTGTGCTGTGGACCTCCGGAGCCCGGGGCAAGAGCTACCCCCTTTGCCCGTACTGCTTCAGCAATCCACCTTTTAGGGACATGAAGAAAGGTATGGGATGCAATGAATGTACACATCCATCCTGTCAGCACTCTCTGAACTCGTTAGGCATTGGGCAGTGTGTGGAGTGTGATAGTGGGGTTTTGGTGCTGGATCCCATTTCTGGACCAAAATGGAGGATGGCCTGTAATAAGTGCAACGTTGTGGTGCACTTCTTTGAACATGCACACAGAGTGCAGGTTGCTCAGGAGAGCTGCGATGCCTGCGATGCCTCTCTGGTCGCCGTAGACTTCAACAAGACTCGCACTCCACTTCCTGCCGGCGAGACCCAACACACAGGCTGTGTTTTCTGTGATCTGGTCTTCCAGGACCTGGTGGAGCTCAAACATGCCACCATGAGGCACCGGGGTGGGGGGGCGAGAAGAGGACGGGGAAGGGGCAGGGGACGTCGTGGCAATCCTAAAAAACCTAAAGACAAAATGGCTGCCTTGGCAGCCTACTTTGTATAGTGTCTGTGCATAGTGTGTCCTTGTTATTTGTTGACAATAGTATGAAGGTGTATGTCAGTAAATGGACTTCTGTTTTTTCATGTGTATCTAATTACACTGaagtaaaatatacatttaaaaatc

Function

symbol description
top3b Predicted to enable DNA topoisomerase activity. Predicted to be involved in DNA topological change. Predicted to be active in nucleus. Orthologous to human TOP3B (DNA topoisomerase III beta).

NR:

description
DNA topoisomerase 3-beta-1

GO:

id name namespace
GO:0006265 DNA topological change biological_process
GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K03165 TOP3; DNA topoisomerase III

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039803629.1 True 2878 mRNA 0.50 18 10986105 11091937
XM_039803630.1 False 2637 mRNA 0.51 18 10986105 11091962

Neighbor

gene id symbol gene type direction distance location
ppm1f ppm1f coding downstream 17901 10807831 ~ 10968204 (-)
tm2d2 tm2d2 coding downstream 281412 10637048 ~ 10704693 (-)
hdr NA coding downstream 875636 10089296 ~ 10110469 (-)
LOC120559983 LOC104937676 coding downstream 910902 10069711 ~ 10075203 (-)
loxl2b loxl2,LOC104937675 coding downstream 932808 9996041 ~ 10053297 (-)
sdf2l1 sdf2l1,LOC106531766,LOC106570867 coding upstream 68487 11160449 ~ 11169327 (-)
LOC120561251 NA coding upstream 259892 11351854 ~ 11354906 (-)
npdc1b npdc1 coding upstream 516657 11608619 ~ 11639438 (-)
niban2b LOC106585213,LOC107560233,LOC107715759 coding upstream 549840 11641802 ~ 11715948 (-)
noxa1 LOC103359690 coding upstream 989537 12081499 ~ 12116241 (-)
G60655 NA non-coding downstream 5349 10980417 ~ 10980756 (-)
G60654 NA non-coding downstream 6775 10978975 ~ 10979330 (-)
G60639 NA non-coding downstream 99941 10884149 ~ 10886164 (-)
G60640 NA non-coding downstream 117769 10814086 ~ 10868336 (-)
G60634 NA non-coding downstream 188950 10796492 ~ 10797155 (-)
G60680 NA non-coding upstream 15589 11107551 ~ 11112659 (-)
G60683 NA non-coding upstream 27888 11119850 ~ 11120802 (-)
LOC120560099 NA non-coding upstream 30591 11122553 ~ 11122908 (-)
G60721 NA non-coding upstream 115646 11207608 ~ 11207913 (-)
G60805 NA non-coding upstream 399359 11491321 ~ 11492157 (-)
unc5db unc5d other downstream 467138 10122152 ~ 10518967 (-)
tacr1a tacr1,LOC102799894,LOC100703444,LOC102196095 other downstream 2258662 8643403 ~ 8727443 (-)
G60145 NA other downstream 2583539 8401022 ~ 8402566 (-)
anapc7 anapc7 other downstream 3098680 7877399 ~ 7887425 (-)
specc1la specc1l other downstream 3220093 7727560 ~ 7766012 (-)
G60715 NA other upstream 97180 11189142 ~ 11189741 (-)
abca2 abca2 other upstream 193423 11285385 ~ 11593660 (-)
LOC120561001 whrn,LOC102797690 other upstream 809688 11901650 ~ 12061646 (-)
LOC120561038 LOC102778062,LOC101486272,LOC102199534,LOC108245630 other upstream 1201745 12293707 ~ 12555285 (-)
G61264 NA other upstream 2497077 13589039 ~ 13589332 (-)

Expression


Co-expression Network