LOC120560787


Basic Information

Item Value
gene id LOC120560787
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 21588876 ~ 21599289 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039803635.1
ACATGAACAGCAAGAGAATGGAGCTGGATGGGATAAAGAAGAAGAGTCGAAAAAGGGGGGAAGACAACAACGCCTTTAAATCAGAGGAGCAGATATATATCGATGTGGACAGTGCTCCTGAAGTCACAGACGATGCACACATAAAGACAGATCAACACAACAAAAGCTTCCCTGAAAGGAAAATGGAGGCATTCCAGGGCTATTTGGCAGAGCACAAAGACCAGATCCATCGGATTATATACCTTGTTTTAGCAGCAGGCTTGGTTGCCATAGTGATAGCGGCATGTGTCCTGAACTTCAACCGGGCTGTCGTGCTGCAGGTCATCACCTTGGTTACCATATTCTTCCTGGTCTGGGATTGGATGATGGAACGCTATGGCGACCGGGTGTGGGAGGAACTCTCTCCTATCAGAGACCTTCTCAGCAGAAACTGGTTTTGGATCAGATGgATAACGTACGTGTTACTGCTGATGGCCCTGGTGTGCTGGCTGGCACTGGACATAGCCCAGCAAGGGACTAGACAGCTTGTGTCTTTCTTTGGTTTGCTGCTCCTCATCTTCTTAATGCTGCTGTTCTCCAAACACCCATTCAGGTGGTGTTGGCAAACTTTGCTGTGCGGGATCGGGCTACAGTTTGTCTTTGGTCTGCTGATCCTCAGGACCACATTTGGCTTAGGTGGACTGGAATGGGTCGGAAAACAAgtagagAGATTTTTGTCATTCACAGATATTGGGTCTAAGTTTGTGTTTGGTGCCAGTTACAGAGACCACAACTTCGTCTTCCAGGTGATGCCTATATTGGTTTTTTTAAGCTCCATCATCTCCATCCTCTACTACATTGGCTTCATGCCCTGGCTCATTTACAAGATTGGATTCATAATGCAGGTTACCATGGGAACATCTCCAGCAGAATCGATGGCTGCAGCTGGAAATATATTTTTGGGACATACAGATTCACCTCTCTTGATTCGTCCATACATCAGTGGGCTAACTCGCTCTGAGATCCATGCTGTGATGACAGGAGGTTTTGCCAGCGTCTCTGGTACCATTTTGGGAGCCTATATCTCCTTTGGGGTTGAGGCAACACACTTGTTGACAGCATCACTGATGTCCGCTCCAGCCTCCCTGGCGATCGCCAAGATGTTCTGGCCTGAAACAGAGACCGCCAGTGCAACAGCCAGTCATGACATCAAAATCGACCATGGAGAGAGTAAGAATGTGTTGGAGGCGGCATCCCAAGGTGCATCTTGTGCTGTGGGTTTAGTGGCCAACATAGTTGTCAACCTTATTGCCTTCCTCGCACTGTTGGCCTTTTTGGATGCAGCTTTCTCCTGGTTGGGCGAGATGTTGGACTGTCCGCAGCTCAGCTTTTCGCTCATCTGCTCTTACATGTTCATGCCTCTCTCCTTGATCATGGGTGTTTCCTGGGAGGACAGTTTCATCGTTGCTGAACTGATTGGCACGAAGACAATTATCAATGAGTTTGTAGCCTATCAAAAGTTGTCAGAGTTCATTTCGAGGCGGAAAGCAGGAGGGCCAGAATATGTGGACAACATAAAGCAGTATATTTCTGTCCACTCTGAAACAATTGCAACCTACGCTTTGTGTGGATTTTCCAACCTTGCTTCGCTGGGGATGTCAATTGGAGCACTGTCGTCCTTGGCTCCAGATAGACGGGCTGACATCTCCAGTTGTGCCTTCAGATCTCTGATTGCAGGCAGCGTCTCCTGTTTCATGACGGCTTGTATTGCAGGCATGTTGTACATCCCTGATCTTCAGTGCTCACATTTCCTGAGCACCGAGTTCACCAATGTGACCAGCAGCTCACAACTGGTCACCTGCTGTACACAACTGTataacagTGTGACGGTGTATGAGCTGTTGAACATGACGATCGGAGAAGGATTCAACCAGAGCAGCCTGCAACACTGCTGCACACTGACGCCCCTCACACACTTCAACTGCAGCCTGGTGCTTTAAATCACTGTGAGCAAAAAACACACTTCAATGGTAGTGAACCCTGTGattatttgttaattttttatcTGTAATGTTTACTGTTCatataatacattttcaataaagttgTCCCGCACTGGTTTT
>XM_039803636.1
ACATGAACAGCAAGAGAATGGAGCTGGATGGGATAAAGAAGAAGAGTCGAAAAAGGGGGGAAGACAACAACGCCTTTAAATCAGAGGAGCAGATATATATCGATGTGGACAGTGCTCCTGAAGTCACAGACGATGCACACATAAAGACAGATCAACACAACAAAAGCTTCCCTGAAAGGAAAATGGAGGCATTCCAGGGCTATTTGGCAGAGCACAAAGACCAGATCCATCGGATTATATACCTTGTTTTAGCAGCAGGCTTGGTTGCCATAGTGATAGCGGCATGTGTCCTGAACTTCAACCGGGCTGTCGTGCTGCAGGTCATCACCTTGGTTACCATATTCTTCCTGGTCTGGGATTGGATGATGGAACGCTATGGCGACCGGGTGTGGGAGGAACTCTCTCCTATCAGAGACCTTCTCAGCAGAAACTGGTTTTGGATCAGATGgATAACGTACGTGTTACTGCTGATGGCCCTGGTGTGCTGGCTGGCACTGGACATAGCCCAGCAAGGGACTAGACAGCTTGTGTCTTTCTTTGGTTTGCTGCTCCTCATCTTCTTAATGCTGCTGTTCTCCAAACACCCATTCAGGTGGTGTTGGCAAACTTTGCTGTGCGGGATCGGGCTACAGTTTGTCTTTGGTCTGCTGATCCTCAGGACCACATTTGGCTTAGGTGGACTGGAATGGGTCGGAAAACAAgtagagAGATTTTTGTCATTCACAGATATTGGGTCTAAGTTTGTGTTTGGTGCCAGTTACAGAGACCACAACTTCGTCTTCCAGGTGATGCCTATATTGGTTTTTTTAAGCTCCATCATCTCCATCCTCTACTACATTGGCTTCATGCCCTGGCTCATTTACAAGATTGGATTCATAATGCAGGTTACCATGGGAACATCTCCAGCAGAATCGATGGCTGCAGCTGGAAATATATTTTTGGGACATACAGATTCACCTCTCTTGATTCGTCCATACATCAGTGGGCTAACTCGCTCTGAGATCCATGCTGTGATGACAGGAGGTTTTGCCAGCGTCTCTGGTACCATTTTGGGAGCCTATATCTCCTTTGGGGTTGAGGCAACACACTTGTTGACAGCATCACTGATGTCCGCTCCAGCCTCCCTGGCGATCGCCAAGATGTTCTGGCCTGAAACAGAGACCGCCAGTGCAACAGCCAGTCATGACATCAAAATCGACCATGGAGAGAGTAAGAATGTGTTGGAGGCGGCATCCCAAGGTGCATCTTGTGCTGTGGGTTTAGTGGCCAACATAGTTGTCAACCTTATTGCCTTCCTCGCACTGTTGGCCTTTTTGGATGCAGCTTTCTCCTGGTTGGGCGAGATGTTGGACTGTCCGCAGCTCAGCTTTTCGCTCATCTGCTCTTACATGTTCATGCCTCTCTCCTTGATCATGGGTGTTTCCTGGGAGGACAGTTTCATCGTTGCTGAACTGATTGGCACGAAGACAATTATCAATGAGTTTGTAGCCTATCAAAAGTTGTCAGAGTTCATTTCGAGGCGGAAAGCAGGAGGGCCAGAATATGTGGACAACATAAAGCAGTATATTTCTGTCCACTCTGAAACAATTGCAACCTACGCTTTGTGTGGATTTTCCAACCTTGCTTCGCTGGGGATGTCAATTGGAGCACTGTCGTCCTTGGCTCCAGATAGACGGGCTGACATCTCCAGTTGTGCCTTCAGATCTCTGATTGCAGGCAGCGTCTCCTGTTTCATGACGGCTTGTATTGCAGTTATAAATACATCACAAACAGCTTTTTTAGAATGAATACAGCTGATGAAGAAGAGAGACACTGtaattcagtgtgtgtgtgtgtgtgtgtgtg
>XM_039803637.1
ACATGAACAGCAAGAGAATGGAGCTGGATGGGATAAAGAAGAAGAGTCGAAAAAGGGGGGAAGACAACAACGCCTTTAAATCAGAGGAGCAGATATATATCGATGTGGACAGTGCTCCTGAAGTCACAGACGATGCACACATAAAGACAGATCAACACAACAAAAGCTTCCCTGAAAGGAAAATGGAGGCATTCCAGGGCTATTTGGCAGAGCACAAAGACCAGATCCATCGGATTATATACCTTGTTTTAGCAGCAGGCTTGGTTGCCATAGTGATAGCGGCATGTGTCCTGAACTTCAACCGGGCTGTCGTGCTGCAGGTCATCACCTTGGTTACCATATTCTTCCTGGTCTGGGATTGGATGATGGAACGCTATGGCGACCGGGTGTGGGAGGAACTCTCTCCTATCAGAGACCTTCTCAGCAGAAACTGGTTTTGGATCAGATGgATAACGTACGTGTTACTGCTGATGGCCCTGGTGTGCTGGCTGGCACTGGACATAGCCCAGCAAGGGACTAGACAGCTTGTGTCTTTCTTTGGTTTGCTGCTCCTCATCTTCTTAATGCTGCTGTTCTCCAAACACCCATTCAGGTGGTGTTGGCAAACTTTGCTGTGCGGGATCGGGCTACAGTTTGTCTTTGGTCTGCTGATCCTCAGGACCACATTTGGCTTAGGTGGACTGGAATGGGTCGGAAAACAAgtagagAGATTTTTGTCATTCACAGATATTGGGTCTAAGTTTGTGTTTGGTGCCAGTTACAGAGACCACAACTTCGTCTTCCAGGTGATGCCTATATTGGTTTTTTTAAGCTCCATCATCTCCATCCTCTACTACATTGGCTTCATGCCCTGGCTCATTTACAAGATTGGATTCATAATGCAGGTTACCATGGGAACATCTCCAGCAGAATCGATGGCTGCAGCTGGAAATATATTTTTGGGACATACAGATTCACCTCTCTTGATTCGTCCATACATCAGTGGGCTAACTCGCTCTGAGATCCATGCTGTGATGACAGGAGGTTTTGCCAGCGTCTCTGGTACCATTTTGGGAGCCTATATCTCCTTTGGGGTTGAGGCAACACACTTGTTGACAGCATCACTGATGTCCGCTCCAGCCTCCCTGGCGATCGCCAAGATGTTCTGGCCTGAAACAGAGACCGCCAGTGCAACAGCCAGTCATGACATCAAAATCGACCATGGAGAGAGTAAGAATGTGTTGGAGGCGGCATCCCAAGGTGCATCTTGTGCTGTGGGTTTAGTGGCCAACATAGTTGTCAACCTTATTGCCTTCCTCGCACTGTTGGCCTTTTTGGATGCAGCTTTCTCCTGGTTGGGCGAGATGTTGGACTGTCCGCAGCTCAGCTTTTCGCTCATCTGCTCTTACATGTTCATGCCTCTCTCCTTGATCATGGGTGTTTCCTGGGAGGACAGTTTCATCGTTGCTGAACTGATTGGCACGAAGACAATTATCAATGAGTTTGTAGCCTATCAAAAGTTGTCAGAGTTCATTTCGAGGCGGAAAGCAGGAGGGCCAGAATATGTGGACAACATAAAGCAGTATATTTCTGTCCACTCTGAAACAATTGCAACCTACGCTTTGTGTGGATTTTCCAACCTTGCTTCGCTGGGGATGTCAATTGGAGCACTGTCGTCCTTGGCTCCAGATAGACGGGCTGACATCTCCAGTTGTGCCTTCAGATCTCTGATTGCAGGCAGCGTCTCCTGTTTCATGACGGCTTGTATTGCAGTGCAGTTATAAATACATCACAAACAGCTTTTTTAGAATGAATACAGCTGATGAAGAAGAGAGACAC
>XM_039803638.1
ACATGAACAGCAAGAGAATGGAGCTGGATGGGATAAAGAAGAAGAGTCGAAAAAGGGGGGAAGACAACAACGCCTTTAAATCAGAGGAGCAGATATATATCGATGTGGACAGTGCTCCTGAAGTCACAGACGATGCACACATAAAGACAGATCAACACAACAAAAGCTTCCCTGAAAGGAAAATGGAGGCATTCCAGGGCTATTTGGCAGAGCACAAAGACCAGATCCATCGGATTATATACCTTGTTTTAGCAGCAGGCTTGGTTGCCATAGTGATAGCGGCATGTGTCCTGAACTTCAACCGGGCTGTCGTGCTGCAGGTCATCACCTTGGTTACCATATTCTTCCTGGTCTGGGATTGGATGATGGAACGCTATGGCGACCGGGTGTGGGAGGAACTCTCTCCTATCAGAGACCTTCTCAGCAGAAACTGGTTTTGGATCAGATGgATAACGTACGTGTTACTGCTGATGGCCCTGGTGTGCTGGCTGGCACTGGACATAGCCCAGCAAGGGACTAGACAGCTTGTGTCTTTCTTTGGTTTGCTGCTCCTCATCTTCTTAATGCTGCTGTTCTCCAAACACCCATTCAGGTGGTGTTGGCAAACTTTGCTGTGCGGGATCGGGCTACAGTTTGTCTTTGGTCTGCTGATCCTCAGGACCACATTTGGCTTAGGTGGACTGGAATGGGTCGGAAAACAAgtagagAGATTTTTGTCATTCACAGATATTGGGTCTAAGTTTGTGTTTGGTGCCAGTTACAGAGACCACAACTTCGTCTTCCAGGTGATGCCTATATTGGTTTTTTTAAGCTCCATCATCTCCATCCTCTACTACATTGGCTTCATGCCCTGGCTCATTTACAAGATTGGATTCATAATGCAGGTTACCATGGGAACATCTCCAGCAGAATCGATGGCTGCAGCTGGAAATATATTTTTGGGACATACAGATTCACCTCTCTTGATTCGTCCATACATCAGTGGGCTAACTCGCTCTGAGATCCATGCTGTGATGACAGGAGGTTTTGCCAGCGTCTCTGGTACCATTTTGGGAGCCTATATCTCCTTTGGGGTTGAGGCAACACACTTGTTGACAGCATCACTGATGTCCGCTCCAGCCTCCCTGGCGATCGCCAAGATGTTCTGGCCTGAAACAGAGACCGCCAGTGCAACAGCCAGTCATGACATCAAAATCGACCATGGAGAGAGTAAGAATGTGTTGGAGGCGGCATCCCAAGGTGCATCTTGTGCTGTGGGTTTAGTGGCCAACATAGTTGTCAACCTTATTGCCTTCCTCGCACTGTTGGCCTTTTTGGATGCAGCTTTCTCCTGGTTGGGCGAGATGTTGGACTGTCCGCAGCTCAGCTTTTCGCTCATCTGCTCTTACATGTTCATGCCTCTCTCCTTGATCATGGGTGTTTCCTGGGAGGACAGTTTCATCGTTGCTGAACTGATTGGCACGAAGACAATTATCAATGAGTTTGTAGCCTATCAAAAGTTGTCAGAGTTCATTTCGAGGCGGAAAGCAGGAGGGCCAGAATATGTGGACAACATAAAGCAGTATATTTCTGTCCACTCTGAAACAATTGCAACCTACGCTTTGTGTGGATTTTCCAACCTTGCTTCGCTGGGGATGTCAATTGGAGCACTGTCGTCCTTGGCTCCAGATAGACGGGCTGACATCTCCAGTTGTGCCTTCAGATCTCTGATTGCAGGCAGCGTCTCCTGTTTCATGACGGCTTGTATTGCAGTGTGACGGTGTATGAGCTGTTGAACATGACGATCGGAGAAGGATTCAACCAGAGCAGCCTGCAACACTGCTGCACACTGACGCCCCTCACACACTTCAACTGCAG
>XR_005639510.1
ACATGAACAGCAAGAGAATGGAGCTGGATGGGATAAAGAAGAAGAGTCGAAAAAGGGGGGAAGACAACAACGCCTTTAAATCAGAGGAGCAGATATATATCGATGTGGACAGTGCTCCTGAAGTCACAGACGATGCACACATAAAGACAGATCAACACAACAAAAGCTTCCCTGAAAGGAAAATGGAGGCATTCCAGGGCTATTTGGCAGAGCACAAAGACCAGATCCATCGGATTATATACCTTGTTTTAGCAGCAGGCTTGGTTGCCATAGTGATAGCGGCATGTGTCCTGAACTTCAACCGGGCTGTCGTGCTGCAGGTCATCACCTTGGTTACCATATTCTTCCTGGTCTGGGATTGGATGATGGAACGCTATGGCGACCGGGTGTGGGAGGAACTCTCTCCTATCAGAGACCTTCTCAGCAGAAACTGGTTTTGGATCAGATGgATAACGTACGTGTTACTGCTGATGGCCCTGGTGTGCTGGCTGGCACTGGACATAGCCCAGCAAGGGACTAGACAGCTTGTGTCTTTCTTTGGTTTGCTGCTCCTCATCTTCTTAATGCTGCTGTTCTCCAAACACCCATTCAGGTGGTGTTGGCAAACTTTGCTGTGCGGGATCGGGCTACAGTTTGTCTTTGGTCTGCTGATCCTCAGGACCACATTTGGCTTAGGTGGACTGGAATGGGTCGGAAAACAAgtagagAGATTTTTGTCATTCACAGATATTGGGTCTAAGTTTGTGTTTGGTGCCAGTTACAGAGACCACAACTTCGTCTTCCAGGTGATGCCTATATTGGTTTTTTTAAGCTCCATCATCTCCATCCTCTACTACATTGGCTTCATGCCCTGGCTCATTTACAAGATTGGATTCATAATGCAGGTTACCATGGGAACATCTCCAGCAGAATCGATGGCTGCAGCTGGAAATATATTTTTGGGACATACAGATTCACCTCTCTTGATTCGTCCATACATCAGTGGGCTAACTCGCTCTGAGATCCATGCTGTGATGACAGGAGGTTTTGCCAGCGTCTCTGGTACCATTTTGGGAGCCTATATCTCCTTTGGGGTTGAGGCAACACACTTGTTGACAGCATCACTGATGTCCGCTCCAGCCTCCCTGGCGATCGCCAAGATGTTCTGGCCTGAAACAGAGACCGCCAGTGCAACAGCCAGTCATGACATCAAAATCGACCATGGAGAGAGTAAGAATGTGTTGGAGGCGGCATCCCAAGGTGCATCTTGTGCTGTGGGTTTAGTGGCCAACATAGTTGTCAACCTTATTGCCTTCCTCGCACTGTTGGCCTTTTTGGATGCAGCTTTCTCCTGGTTGGGCGAGATGTTGGACTGTCCGCAGCTCAGCTTTTCGCTCATCTGCTCTTACATGTTCATGCCTCTCTCCTTGATCATGGGTGTTTCCTGGGAGGACAGTTTCATCGTTGCTGAACTGATTGGCACGAAGACAATTATCAATGAGTTTGTAGCCTATCAAAAGTTGTCAGAGTTCATTTCGAGGCGGAAAGCAGGAGGGCCAGAATATGTGGACAACATAAAGCAGTATATTTCTGTCCACTCTGAAACAATTGCAACCTACGCTTTGTGTGGATTTTCCAACCTTGCTTCGCTGGGGATGTCAATTGGAGCACTCGTCCTTGGCTCCAGATAGACGGGCTGACATCTCCAGTTGTGCCTTCAGATCTCTGATTGCAGGCAGCGTCTCCTGTTTCATGACGGCTTGTATTGCAGGCATGTTGTACATCCCTGATCTTCAGTGCTCACATTTCCTGAGCACCGAGTTCACCAATGTGACCAGCAGCTCACAACTGGTCACCTGCTG

Function

GO:

id name namespace
GO:1901642 nucleoside transmembrane transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0005415 nucleoside molecular_function

KEGG:

id description
K11536 SLC28A; pyrimidine nucleoside transport protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039803635.1 True 2102 mRNA 0.47 17 21588876 21599289
XM_039803636.1 False 1845 mRNA 0.47 16 21588876 21599034
XM_039803637.1 False 1818 mRNA 0.48 16 21588876 21599002
XM_039803638.1 False 1857 mRNA 0.48 16 21588876 21599153
XR_005639510.1 False 1841 transcript 0.48 16 21588876 21598799

Neighbor

gene id symbol gene type direction distance location
agtpbp1 agtpbp1 coding upstream 130529 21428343 ~ 21458347 (+)
golm1 golm1 coding upstream 178146 21403963 ~ 21410730 (+)
LOC120561163 lmbrd2 coding upstream 185486 21393773 ~ 21403390 (+)
LOC120560913 gdnf,LOC103362940,LOC102209597,LOC101471543,LOC102304722,LOC106526208 coding upstream 306368 21278402 ~ 21282508 (+)
si:ch73-72b7.1 unc5c,LOC102797243,LOC102309063,LOC102212007 coding upstream 539027 20849986 ~ 21049849 (+)
hnrnpk hnrnpk coding downstream 27723 21627012 ~ 21641536 (+)
c6h9orf64 LOC103366756,LOC102204152,LOC102298164 coding downstream 43608 21642897 ~ 21649576 (+)
LOC120561417 kif27 coding downstream 51168 21650457 ~ 21660743 (+)
gkap1 gkap1,LOC102779162 coding downstream 62414 21661703 ~ 21672091 (+)
LOC120560432 NA coding downstream 72918 21672207 ~ 21679064 (+)
G63628 NA non-coding upstream 101838 21486769 ~ 21487038 (+)
G63627 NA non-coding upstream 104210 21479780 ~ 21484666 (+)
G63576 NA non-coding upstream 241359 21346367 ~ 21347517 (+)
G63545 nipbl,LOC104950412 non-coding upstream 274785 21312753 ~ 21314091 (+)
G63511 NA non-coding upstream 366225 21164816 ~ 21222651 (+)
LOC120560273 NA non-coding downstream 9534 21608823 ~ 21620711 (+)
G63641 rmi1,LOC102777824,LOC104967280 non-coding downstream 16934 21616223 ~ 21618602 (+)
G63714 NA non-coding downstream 245543 21844832 ~ 21845138 (+)
G63715 NA non-coding downstream 276156 21875445 ~ 21875687 (+)
G63792 NA non-coding downstream 532595 22131884 ~ 22150124 (+)
G63480 rbm19 other upstream 910960 20676417 ~ 20677916 (+)
wdr31 wdr31,LOC102796061 other upstream 1098290 20473651 ~ 20490586 (+)
vps13a vps13a other upstream 1146783 20400947 ~ 20442093 (+)
c6h2orf68 c21h2orf68,c9h2orf68,LOC104941594,LOC103363183,LOC104920309 other upstream 1825352 19759596 ~ 19763524 (+)
rasl10a rasl10a other upstream 2139926 19430401 ~ 19448950 (+)
G63905 NA other downstream 1330610 22929899 ~ 22930205 (+)
LOC120560905 clg12h9orf3,LOC103358904,LOC102294417,LOC101470200,LOC102214270 other downstream 1888678 23487967 ~ 23562285 (+)
G64108 NA other downstream 2093373 23692662 ~ 23693291 (+)
prxl2c aaed1 other downstream 3222025 24821314 ~ 24823066 (+)
cdc14b cdc14b,LOC102776968,LOC103141798,LOC106948523 other downstream 3224429 24823718 ~ 24837448 (+)

Expression


Co-expression Network