ankrd39 (LOC103353637,LOC100700369)


Basic Information

Item Value
gene id ankrd39
gene name LOC103353637,LOC100700369
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 2137796 ~ 2139643 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039803642.1
TCACTCGTAGGCACTTTTTTTTGTATGGGCTGGCCTGGACAAACGTGTAGCcgtccttttttttgttttgttttacaaaaataataGCCATTcgcggttttttttttaacctgtatCTGAATTCTAATATAACATTGTTTAGGTAATTCGGTTTAAACAttaatttactttatttgtGGGCTTGTGTGTTTTATAACTTCGACTGTTGGTGGTGGTAATGCACCAAAAAGTCGACTAACATTACACATATagaacagaagaagaaacacGGAACTGTCAAAAGGCATAATGTAAATGCATGCCCGTACAAAAAAACTAGGGTTCAGCGGTTTGAATCAATAGGGAACTATTTTTTATTCTATTAGTGTCAATTAAAACAATGGCGTCTGATAGACACCAGTGTTCGTGTTGCTCCCATCCAGTCTCCTCTCCTAGTGTTTACCAGACGCTGAGTGAAATGGATTTTGAACGAGGTGTCTGGTCTGCTGCAATGGATGGGGACATGGAGAGGGTCAGGTCCCTGGTCCAGAAGGGCACAGACCCTAACCTGAGAGACTCAGCTGGATACACAGCTCTGCACTATGCAAGTCGCAGTGGTCATCATGCTGTATGCAAGTTTCTTCTCGAGAATGGTGCTTGTGCATCTCCCCAGACACCAGGCGGTGCCACGCCGCTCCATCGATCCGCTTACCGCGGCCACCTGGAAGTGGTTCGACTTCTGCTGCACCACAGAGCAGATCCAATGCTCTGTGATGACGATGGTGCATCTCCTTTACATAAGgctgcagaacagggacacgGAGAGGTATGTCAGCTGCTTGTCGAGCACTGTGCAGCGCTCTGCAGCCAGGTGAACAAGAGGCTCCAGCTCCCCTTCCAGCTGGCACCGCAGGGAGACCTGCAGGAGCTCTTAAAACCACCTCGGTGACACACCGCATCTGGGGCATGCTGAGATCAGACAAAATGACATAAGCTCAAGACATACTAGGTGAGGTCTGCATAGGTCAGAACACTGATCTTGACTGGGATTCACTACATTACATGTGGCTACTTTTTTCCTCCattgaacatcaacaacaagCCAAACTGGGCGGACACAACAtttcattttctaaaaaaaaaaggatccaaGGCATTCTTCTTGTGAAAATTCttataaaaagcctttatttagaTGGCTATTCCATATCGAAATCTTACATTAAGAGTAGAGCTGGGCAGCAACCCGCGCGTACCGGCACAAAGCAGCCTTCTTTAGGGTGTGCATTTTCTAGCTTCATACCATAAACATtatcctgtttttcttttttaggtttCTGCttgtgtagtctatatccatgacgttccaatTCCGGGATTGCTGCGGTGCccccggaaattccgccggttGTCCCTCTTTtgcgccggatgtccgtcaccttccgctttctttctgttgaaactccggtggatttgtgaggactatggttaa
>XM_039803643.1
AATTGGTCGGAGCGTTCACTCGTAGGCACTTTTTTTTGTATGGGCTGGCCTGGACAAACGTGTAGCcgtccttttttttgttttgttttacaaaaataataGCCATTcgcggttttttttttaacctgtatCTGAATTCTAATATAACATTGTTTAGGTAATTCGGTTTAAACAttaatttactttatttgtGGGCTTGTGTGTTTTATAACTTCGACTGTTGGTGGTGGTAATGCACCAAAAAGTCGACTAACATTACACATATagaacagaagaagaaacacGGAACTGTCAAAAGGCATAATGTAAATGCATGCCCGTACAAAAAAACTAGGGTTCAGCGGTTTGAATCAATAGGGAACTATTTTTTATTCTATTAGTGTCAATTAAAACAATGGCGTCTGATAGACACCAGTGTTCGTGTTGCTCCCATCCAGTCTCCTCTCCTAGTGTTTACCAGACGCTGAGTGAAATGGATTTTGAACGAGGTGTCTGGTCTGCTGCAATGGATGGGGACATGGAGAGGGTCAGGTCCCTGGTCCAGAAGGGCACAGACCCTAACCTGAGAGACTCAGCTGGATACACAGCTCTGACACCAGGCGGTGCCACGCCGCTCCATCGATCCGCTTACCGCGGCCACCTGGAAGTGGTTCGACTTCTGCTGCACCACAGAGCAGATCCAATGCTCTGTGATGACGATGGTGCATCTCCTTTACATAAGgctgcagaacagggacacgGAGAGGTATGTCAGCTGCTTGTCGAGCACTGTGCAGCGCTCTGCAGCCAGGTGAACAAGAGGCTCCAGCTCCCCTTCCAGCTGGCACCGCAGGGAGACCTGCAGGAGCTCTTAAAACCACCTCGGTGACACACCGCATCTGGGGCATGCTGAGATCAGACAAAATGACATAAGCTCAAGACATACTAGGTGAGGTCTGCATAGGTCAGAACACTGATCTTGACTGGGATTCACTACATTACATGTGGCTACTTTTTTCCTCCattgaacatcaacaacaagCCAAACTGGGCGGACACAACAtttcattttctaaaaaaaaaaggatccaaGGCATTCTTCTTGTGAAAATTCttataaaaagcctttatttagaTGGCTATTCCATATCGAAATCTTACATTAAGAGTAGAGCTGGGCAGCAACCCGCGCGTACCGGCACAAAGCAGCCTTCTTTAGGGTGTGCATTTTCTAGCTTCATACCATAAACATtatcctgtttttcttttttaggtttCTGCttgtgtagtctatatccatgacgttccaatTCCGGGATTGCTGCGGTGCccccggaaattccgccggttGTCCCTCTTTtgcgccggatgtccgtcaccttccgctttctttctgttgaaactccggtggatttgtgaggactatggttaa
>XR_005639512.1
TCACTCGTAGGCACTTTTTTTTGTATGGGCTGGCCTGGACAAACGTGTAGCcgtccttttttttgttttgttttacaaaaataataGCCATTcgcggttttttttttaacctgtatCTGAATTCTAATATAACATTGTTTAGGTAATTCGGTTTAAACAttaatttactttatttgtGGGCTTGTGTGTTTTATAACTTCGACTGTTGGTGGTGGTAATGCACCAAAAAGTCGACTAACATTACACATATagaacagaagaagaaacacGGAACTGTCAAAAGGCATAATGTAAATGCATGCCCGTACAAAAAAACTAGGGTTCAGCGGTTTGAATCAATAGGGAACTATTTTTTATTCTATTAGTGTCAATTAAAACAATGGCGTCTGATAGACACCAGTGTTCGTGTTGCTCCCATCCAGTCTCCTCTCCTAGTGTTTACCAGACGCTGAGTGAAATGGATTTTGAACGAGGTGTCTGGTCTGCTGCAATGGATGGGGACATGGAGAGGGTCAGGTCCCTGGTCCAGAAGGGCACAGACCCTAACCTGAGAGACTCAGCTGGATACACAGCTCTGCACTATGCAAGTCGCAGTGGTCATCATGCTGTATGCAAGTTTCTTCTCGAGAATGGTGCTTGTGCATCTCCCCAGACACCAGGCGGTGCCACGCCGCTCCATCGATCCGCTTACCGCGGCCACCTGGAAGTGGTTCGACTTCTGCTGCACCACAGAGCAGATCCAATGCTCTGTGATGACGATGGTGCATCTCCTTTACATAAGgctgcagaacagggacacgGAGAGGTATGTCAGCTGCTTGTCGAGCACTGTGCAGCGCTCTGCAGCCAGGTGAACAAGAGGCTCCAGCTCCCCTTCCAGCTGGCACCGCAGGGAGACCTGCAGGAGCTCTTAAAACCACCTCGGTGACACACCGCATCTGGGGCATGCTGAGATCAGACAAAATGACATAAGCTCAAGACATACTAGgtttCTGCttgtgtagtctatatccatgacgttccaatTCCGGGATTGCTGCGGTGCccccggaaattccgccggttGTCCCTCTTTtgcgccggatgtccgtcaccttccgctttctttctgttgaaactccggtggatttgtgaggactatggttaa

Function

NR:

description
ankyrin repeat domain-containing protein 39 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039803642.1 True 1471 mRNA 0.46 4 2137796 2139628
XM_039803643.1 False 1411 mRNA 0.46 4 2137796 2139643
XR_005639512.1 False 1147 transcript 0.48 5 2137796 2139628

Neighbor

gene id symbol gene type direction distance location
fgfr1a LOC104936599,LOC103353638 coding downstream 15230 2088440 ~ 2122566 (-)
lgi3 lgi3 coding downstream 51252 2067890 ~ 2086544 (-)
chmp7 chmp7 coding downstream 70720 2063102 ~ 2067076 (-)
rflna rflna,LOC104943676,LOC100697335,LOC101470372,LOC103353642 coding downstream 174190 1957045 ~ 1963606 (-)
stx2b stx2 coding downstream 458691 1670616 ~ 1679105 (-)
npy8br LOC104958550,LOC104939448 coding upstream 38632 2178275 ~ 2179887 (-)
tbx16 LOC104928806,LOC103353632 coding upstream 67762 2207405 ~ 2216711 (-)
cabin1 cabin1 coding upstream 77949 2217592 ~ 2262814 (-)
LOC120560449 NA coding upstream 178644 2318287 ~ 2319276 (-)
vsig8b NA coding upstream 185343 2324986 ~ 2330823 (-)
G58460 NA non-coding downstream 74857 2062670 ~ 2062939 (-)
G58472 NA non-coding downstream 75261 2062106 ~ 2062535 (-)
G58471 NA non-coding downstream 79566 2057465 ~ 2058230 (-)
G58465 NA non-coding downstream 105082 2032509 ~ 2032714 (-)
G58456 NA non-coding downstream 186664 1948079 ~ 1951132 (-)
G58521 NA non-coding upstream 6479 2146122 ~ 2146552 (-)
G58529 NA non-coding upstream 32796 2172439 ~ 2173320 (-)
LOC120561446 NA non-coding upstream 40253 2179896 ~ 2182728 (-)
G58559 NA non-coding upstream 194336 2333979 ~ 2334189 (-)
G58560 NA non-coding upstream 195103 2334746 ~ 2335022 (-)
rimbp2 rimbp2,LOC107081823,LOC108247306,LOC103353655 other downstream 479748 1532053 ~ 1658048 (-)
LOC120560045 NA other downstream 2112847 17589 ~ 24949 (-)
LOC120560995 NA other upstream 410403 2550046 ~ 2551366 (-)
ggt1a ggt1,LOC102775580,LOC108234964 other upstream 438232 2577875 ~ 2592746 (-)
si:ch211-107p11.3 LOC103353652,LOC102075650,LOC108234931,LOC104950460 other upstream 546248 2685891 ~ 2689087 (-)
LOC120561394 LOC107097799,LOC103353613,LOC101077666 other upstream 550967 2690610 ~ 2692543 (-)
LOC120561349 donson,LOC102310661 other upstream 694545 2834188 ~ 2846607 (-)

Expression


Co-expression Network