LOC120560800


Basic Information

Item Value
gene id LOC120560800
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 213036 ~ 216499 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039803649.1
TTGACTCTGGGCTTGGTACGGGAGTTGGAGGCCACAATAGCAAATTGCTGTTTTCAGATAATCACCCAAATAGCACAGTCACAGCAAAAGGATGTGTATGCAGTGGATTGCTACGTGGTACCAACATGGCTACCACCACATTGTCCGGATACCTCGTCTTTCCCcAATGATTTGGCAAACAAGGATTTTGTCCTCATACCTATTTGGAAACCAGGACACTACATGCTCTGTGTTTTgaagctgagagagagacaaatcCTTTTCCCAGACTCCTTATTCCATCTGGAAGCCTCAGTTGGCTTTGGCGATCAACGTTACATTCAGATTTGCAGCGATCTTGCACAGAGGATTATCCCAGGAGAATGGACTGTGATATACAGCAAGGACATCAAAGGTCTCCCAAGACAGGAAGATGGCAATGCCTGTGGGATCTTCATGTTAATGTATGCTCTTTACATTGCGCTGGGGGCAGATTTTGACTTCACAACTGGTGACATGGACACAATCAGGACATGGTGGTGCCTGTTGCTCCTGTCTGGTCATTCAGTTGTCAGGTTCGCACAGAAAAGGAAATATGAAGATCCCATCATAATAGCAGATAAGGATAAGGAGGAGGCAAAGAGGCCCAGGACAATCCCTCCTCAACAGTCGGAACGGCATGAGACGGGACTGCATGACATgggacgctccaggctgcagccatacagtcttgTGGAAAGGGCTTCCCCACTGCGCCCCACCCCACCCATATTACAGTTTAAGGTTATCCGGAGCCGGCTATCCGACAGGGGCCCCCCGCACCCTGCCTATATGCAATTAAACATGTTTGAGAACCATATGAAGATAATAGTATGTAAGGAACGTTAACAGCTTAAGTAAACACACTTTAAAGTTATCTTGTATTTCCAGTTGCAGCTTGGTTCAAGTGACCAATGAATGTCAACAgtacaaaaacaacacaggaaAGGGGTTCTAGTATGTGACCACACCTAGAGGCAAACACGCCTCGTCCCCTTTAGTTTTCATACCAAGTGACAGCTGTTAAAATCTTGCCAGGAGACCTAAGAGGCCAACTGGAGATTTGTGGGAAGACTTAATCACAATAGTGAGGTGCCTGACTATGGGACCTTTAGCCTACAGGTGATATAAAGACATACAAAGGTCAGTAGTGCAGAGAAGATTGATGTGATAGGAGACCTGCTGTTGGGACCTTGTCAGAGGCTTAGCAGCAGCATTCTGGACCTCTTATGGTTCTCCTATGATGTAAAGATGGATAAAATACATAACTTAATAGTCCAGTTGGgatcaaataaacacaaatgtaaTCATATCCATCTCAGTTTAAGACAGAACAGGCCTGAGTTTGTAAATGTTTCTCAATAGGGGAACAGGCAAATATCTTTGCACACCCTGCACAAATTGTACAGCCTTCTTTTCCTTTCTAAAACTGTTATATTGCACATATGTTATTGTGTCTttttacatgcttttattttattatttccagTCTGTATTTATGGTCTTGactaaacactgaaaaaaaagccttttgaaTTTACTTGATTTTAATGTGTACATGATCTCTCTCTTAATTATTTCTTGTCAAACCAACACATTTTATTCACATTAGACTGTCTATTGTGTAATGTTAAGTAATTTCATCATGTCCAGGATGCCTGATTTTAGACTGTAACTGCAACTTAATTTTTGAAAGCTAGTATTATGTAAAGGTAACTTTAAAGCAATTTCATCATGTCCTTGGTACCCGAGTGGGGTCTCTAAATCTAACATGATTTGTTAAAGTTAACTCTATCCAAATGTATTGTAGCCATCGGTTCCTTGTgtgttgtactgtatgttgaaatGATTTGCAAATTGTCTATATTGAGTATTAAAACTTAGAACATACTAATTTTACCCAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039803649.1 True 1924 mRNA 0.41 12 213036 216499

Neighbor

gene id symbol gene type direction distance location
ccdc157 ccdc157 coding upstream 25692 183677 ~ 187344 (+)
LOC120560558 brd3,LOC101484219,LOC107386174,LOC101063386,LOC103397963 coding upstream 113532 79632 ~ 99504 (+)
LOC120561159 rasal1 coding downstream 6642 223141 ~ 244194 (+)
syn1 syn1,LOC102209911 coding downstream 124478 340977 ~ 356353 (+)
unm_hu7912 LOC102295462,LOC101483439,LOC103375604,LOC100694328 coding downstream 150882 367381 ~ 376915 (+)
gapvd1 gapvd1,LOC102777314 coding downstream 164673 381172 ~ 432629 (+)
pbx3b pbx3 coding downstream 316314 532813 ~ 593805 (+)
G58011 NA non-coding upstream 2360 209281 ~ 210676 (+)
G57994 NA non-coding upstream 86773 121847 ~ 126263 (+)
LOC120560560 NA non-coding upstream 102975 108566 ~ 110061 (+)
G57961 NA non-coding upstream 196119 15528 ~ 16917 (+)
G58021 dtx1 non-coding downstream 29392 245891 ~ 252072 (+)
G58024 dtx1,LOC106585516,LOC106579922 non-coding downstream 41069 257568 ~ 259697 (+)
G58057 NA non-coding downstream 325391 541890 ~ 572532 (+)
G58151 NA non-coding downstream 662755 879254 ~ 882251 (+)
G58156 NA non-coding downstream 675598 892097 ~ 892439 (+)
LOC120560799 NA other upstream 653 210742 ~ 212383 (+)
lmx1bb lmx1b,LOC102213269,LOC100696266 other downstream 572906 789405 ~ 837861 (+)
dock5 dock5 other downstream 2057179 2273678 ~ 2312665 (+)
lman2lb NA other downstream 2661875 2878374 ~ 2883861 (+)
LOC120560521 tjp2 other downstream 3218666 3435165 ~ 3522756 (+)
G59086 NA other downstream 3900780 4117279 ~ 4117631 (+)

Expression


Co-expression Network