sprn2


Basic Information

Item Value
gene id sprn2
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 26324749 ~ 26328928 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039803671.1
TATATCTGGTGACGATGGTTCAGCAGCTTAGTACACGCCAAGCCAATGAGCAGGTGTGAGACGGAGTGATCCACTCCACCTGACTGAGATGACTGGACGATAACAGGCTGACCCTGAAACATACGTCTTACTGTCACAAGAGTCTGAGCTGCAGACAAACACCAGGCGTTTCTTTTACTGTCAGAGGAGCAACATCATCTTTGTTTCCATCACAAACAGCCACTCAACAGGATCCATAAATCATGGCTGTCCTGCAGAAGCTACCCCTCACAGTGGCCCTCTGCCTGCTGCTCCTTGCCACACTGTTACCCAGCTCTGAAGCCCGGCGTGGTGGTGGTCGTGGTGGTTTTGGAGGTGGTGGATTTAACAGAGGTGGTGGCTCCAGCCGGGGCTGGGGCGGTGGGGGTGGCCAGGCCTACAGACCGGTCCAGAGCAGTGGCCCCAGTGCAGGGAAAGTAGCCGGGGCAGCTGCAGCGGGCGCCATAGGAGGAGCAATGATTGGGTCTGCCCTGAGCCGCCCAGGGTATGGTGGAGGATATGGAGGCTATGGAGGAGGATATGGTGGAGGGTATGGAGGATATGGAGGGGGGTATGGCTACCCACGATATGGAGTTGGTGGTGGCTACGGCCCCAGGCCTGGCTACGAGCCAGAAGGCTCTGGAGATATGGAGTACTACACTGCAGCATCCAGCGGCCCCATCTACAACAGTATCATCGTTGTCATCGGCTCCCTGATGTCCATGCTGATGGGCCACTGGGTGGCAGTCATGTAGAGCTGGAGACAGAGCTGGGatcccaaaaacacacacacacaggtccaaACAAACCTTCAATAAAAACAACCCACAACCTGGCggaaaacagaactattttcaGTTTAAAGCCTAATGTGACCTAAAATATGACCCTTAAATAATGAAAAGCTGTggcaagtttttgttttttgttttagaaaTATGTCAGAGTTTGACTCGAATGGGTTCCACATTTcttctttaaagtgcccatattatgctcattttcaggttcataattgtaatttgagattgtatcagaataggttcacatggtttaattttca

Function

NR:

description
major prion protein-like

GO:

id name namespace
GO:0030001 metal ion transport biological_process
GO:0006814 sodium ion transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process

KEGG:

id description
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039803671.1 True 1081 mRNA 0.51 2 26324749 26328928

Neighbor

gene id symbol gene type direction distance location
LOC120561147 rassf2 coding upstream 17121 26295751 ~ 26307628 (+)
slc23a2 slc23a2,LOC107394182 coding upstream 33283 26249127 ~ 26291466 (+)
kcnip3b kcnip3,LOC102307840,LOC102210345,LOC104951840,LOC103397788,LOC101482209 coding upstream 79273 26197240 ~ 26245476 (+)
pcna pcna coding upstream 140389 26181011 ~ 26184360 (+)
zgc:152830 LOC103357146 coding upstream 144633 26174224 ~ 26180116 (+)
plpp5 plpp5,LOC102777825 coding downstream 55481 26384409 ~ 26394401 (+)
cdc45 cdc45 coding downstream 66870 26395798 ~ 26402661 (+)
zgc:63587 LOC101064433 coding downstream 86962 26415890 ~ 26447513 (+)
sept5a sept5,LOC102226618 coding downstream 130698 26459626 ~ 26470702 (+)
gp1bb gp1bb,LOC102779926 coding downstream 143846 26472774 ~ 26475318 (+)
G64764 NA non-coding upstream 2793 26303850 ~ 26321956 (+)
G64677 NA non-coding upstream 395591 25928924 ~ 25929158 (+)
G64663 NA non-coding upstream 402361 25922163 ~ 25922388 (+)
G64658 NA non-coding upstream 406656 25917765 ~ 25918093 (+)
G64657 NA non-coding upstream 407273 25917187 ~ 25917476 (+)
G64834 NA non-coding downstream 183537 26512465 ~ 26514759 (+)
G64836 polb non-coding downstream 202824 26531752 ~ 26533420 (+)
G64838 polb non-coding downstream 206084 26535012 ~ 26537695 (+)
G64839 NA non-coding downstream 209340 26538268 ~ 26538541 (+)
G64840 NA non-coding downstream 209730 26538658 ~ 26540223 (+)
LOC120560359 NA other upstream 396153 25926087 ~ 25928596 (+)
LOC120560031 LOC104941040,LOC103357154,LOC102795853 other upstream 409172 25914279 ~ 25915577 (+)
LOC120561182 LOC104948667,LOC104930137,LOC103397628,LOC103366370,LOC107092578,LOC102226292,LOC106956829,LOC106919698,LOC103470079,LOC103141747 other upstream 628173 25684964 ~ 25696576 (+)
cdc14b cdc14b,LOC102776968,LOC103141798,LOC106948523 other upstream 1487301 24823718 ~ 24837448 (+)
prxl2c aaed1 other upstream 1501683 24821314 ~ 24823066 (+)
nsd3 whsc1l1 other downstream 30192 26359120 ~ 26383843 (+)
G64814 cldn5,LOC103357131 other downstream 83941 26412869 ~ 26414597 (+)
c6h22orf39 clg12h22orf39 other downstream 165356 26494284 ~ 26496987 (+)
cltcl1 LOC100691387,LOC103359525 other downstream 285309 26614237 ~ 26644167 (+)
si:dkey-178e17.1 slc25a1,LOC100697273,LOC101470788,LOC103359526,LOC102784907,LOC107394264,LOC103145904 other downstream 315733 26644661 ~ 26661895 (+)

Expression


Co-expression Network