LOC120560812 (thg1l,LOC106912903,LOC103154062)


Basic Information

Item Value
gene id LOC120560812
gene name thg1l,LOC106912903,LOC103154062
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 4226036 ~ 4227032 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039803676.1
agGAGCACCCTCATGCTGATTGGAAAGGCTTTTAGATTTGGTGGACGTGTCAGGTCTGGTGTTATCAAACCGTTGGCCTGTCTTTTGGCCTCCCAGCAACATGGCCAAGAGCAAGTTTGAGTACGTGCGCAAATTTGAAACAGATGACACGTGTCTACGAAACTGCTACATTGTTGTGAGACTGGACGGGCGCAACTTCCACAAGTTTGCAGAGCAGCACGAGTTTCCAAAGCCCGATGACAACAGAGCCTTGGGTCTGATGAGCCGAGTGGAAGAGCTCGAGGATATCGTCATCGCTTCCGGTCAAAGTGAGGAGTTCAGCTTTGTTTTCAAGAGGACCTCCACCTGGTTTAAAAGACGAGCCAGTAAGCTCATGACCCTTGTGGCCTCCCAGTTCTCCTCCTCGTATGTGTTTTACTGGAAGGAGTTTTTTGGGCAACAGCCCCTCTTGTACCCCCCAGGTTTTGATGGACGTGTGGTCACAGACTACCTCAGCTGGAGGCAGGCAGATTGTCACATAAATAATTTGTACAACACAGTGTTTTGGACTTTAGTACAAAAGGGGGGACTCACCACAGCCCAGGCAGAGGATCGCttaaaagtgaaagcaaaacaCAACCTTAAGTTAAttaatatgtgtttgtgtgtatatgtatttatacactATATGTTATAATAATTT

Function

symbol description
thg1l Predicted to enable tRNA guanylyltransferase activity. Predicted to be involved in tRNA processing. Predicted to act upstream of or within tRNA modification. Human ortholog(s) of this gene implicated in autosomal recessive cerebellar ataxia. Orthologous to human THG1L (tRNA-histidine guanylyltransferase 1 like).

NR:

description
PREDICTED: probable tRNA(His) guanylyltransferase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039803676.1 True 682 mRNA 0.46 5 4226036 4227032

Neighbor

gene id symbol gene type direction distance location
si:dkey-3h3.3 NA coding upstream 17537 4199523 ~ 4208499 (+)
ccdc125 NA coding upstream 336381 3869033 ~ 3889655 (+)
rad17 rad17,LOC102794325 coding upstream 357460 3848479 ~ 3868576 (+)
LOC120561175 ube2l3,LOC106562742,LOC104961333,LOC107396654,LOC102226353,LOC107088009,LOC108248341 coding upstream 398609 3818322 ~ 3827427 (+)
arid3c LOC103046366,LOC105901092,LOC107676636,LOC107552548,LOC108438346 coding upstream 450363 3688045 ~ 3775673 (+)
pdzd2 LOC102293871 coding downstream 44472 4271504 ~ 4343670 (+)
npr3 npr3 coding downstream 130062 4357094 ~ 4388795 (+)
araf araf,LOC103397571 coding downstream 210501 4437533 ~ 4456244 (+)
LOC120560544 ppp6c,LOC102784428,LOC105915786,LOC106585446,LOC103397055,LOC105014157,LOC101171716 coding downstream 469571 4696603 ~ 4703041 (+)
golga1 golga1 coding downstream 477685 4704717 ~ 4735322 (+)
G59093 NA non-coding upstream 92972 4132848 ~ 4133064 (+)
G59042 NA non-coding upstream 264717 3961060 ~ 3961319 (+)
G59032 NA non-coding upstream 329795 3895670 ~ 3896241 (+)
G59033 NA non-coding upstream 334183 3891045 ~ 3891853 (+)
LOC120561177 NA non-coding upstream 388357 3837307 ~ 3837679 (+)
G59132 NA non-coding downstream 80887 4307919 ~ 4329460 (+)
G59163 NA non-coding downstream 122534 4349566 ~ 4349919 (+)
G59174 NA non-coding downstream 206061 4433093 ~ 4435260 (+)
G59175 NA non-coding downstream 234332 4461364 ~ 4462824 (+)
G59217 NA non-coding downstream 326989 4554021 ~ 4555654 (+)
G59086 NA other upstream 108405 4117279 ~ 4117631 (+)
LOC120560521 tjp2 other upstream 703280 3435165 ~ 3522756 (+)
lman2lb NA other upstream 1342175 2878374 ~ 2883861 (+)
dock5 dock5 other upstream 1913371 2273678 ~ 2312665 (+)
lmx1bb lmx1b,LOC102213269,LOC100696266 other upstream 3388175 789405 ~ 837861 (+)
G59172 sub1 other downstream 197109 4424141 ~ 4429981 (+)
trnal-aag_1 NA other downstream 205139 4432171 ~ 4432253 (+)
trnaq-uug_2 NA other downstream 205636 4432668 ~ 4432739 (+)
mrpl41 mrpl41 other downstream 303022 4530054 ~ 4531165 (+)
LOC120560573 LOC104934257 other downstream 344351 4571383 ~ 4618033 (+)

Expression


Co-expression Network