spring1 (clg12h12orf49,c21h12orf49,LOC101487986,LOC104923683,LOC102233336)


Basic Information

Item Value
gene id spring1
gene name clg12h12orf49,c21h12orf49,LOC101487986,LOC104923683,LOC102233336
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 30263603 ~ 30267073 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039803686.1
CTGATGGTGGACGTCAGATTTCGCTGGAAAAAACATCACAGTTGCTGCTTGTTAGACGTAATGTTGGACATTACAAGGACCGTTTTCTTCAAATGAGACGAAACTGCGTCACTAGACGGTGTCATAGCgtattatagttttttttatcatcagtaCTGTCTAGCTTAACGTTATCTAAgacagaaagctaacgctaacgAAAGCTAGCCAGCAGGCTAACAAAGCAGGCGTTTATGATGAAACACCGTTAACTAGCTTTACGTTACGTGCCcaccagttaacgttagctgttttGTGCTATGTCAGAGCATAATTCATATTGACAGCCATTGTCCGTTTAGCGTAAttgtgttaaaaagcttaacctgcaacatgggtTAGCTAAGTTAAAATCGAACTCACTTCTtcggtaacgttaacgttatttgTGTGATTTATCACATTTGCTGTCTGATAAAAGCTAGCAAACGTCAGTTTACAGACAGTTTTGACAGTTTTGGGCCAGTCATCACGTAGGCACACATCGTTACATATTTCTGACAAATACGTCAGTCAGGGAATTGATACCCCTGGAGGTCTGATGTTCTGGACTGTCACTGTCACCGGCATCTCCACAAGAAAGCCATGTTATGATGGTGCTACGGCGGTTACTGAGAAAGCGCTGGGTGCTGGGAGTAGTCTTCGGACTGTCTCTCATCTATTTTCTCACCAGCACGCTTAAACAGGAGGAGCGGACCATACGGGACCGCACACTCTTAGAGGTCAGAGATTCAGACCATCGCATCCCCTGGAAAGTCCGCTTCAACCTGGGCAACAGCAGCCGACAGATCACTCAGTGCAGAAACTCCATCCAGGGCAAGACACTGCTCACAGATGAACTTGGTTATGTCTGCGAGAGAAATGACTTGCTGGTTAATGGCTGCTGTAACGTCAATGCCCCCAGCTCCAGACAGTACATTTGTAAAAGCTGCCTGGCCAACGGCTGCTGTAGCATCTATGAGTACTGCGTGTCTTGCTGCCTCCAGCCTGATAAGCAACTTCTCCTTGAGCGCTTCCTGAACCGTGCAGCTGAAGGTTTCCAGAATCTCTTCACTGCTGTGGAGGATCATTTTGAGCTGTGCCTGGCCAAGTGTAGGACCTCTTCACAAAGTGTTCAACATGAGAACACCTACCGAAACCCTCAAGCAAAGTACTGCTACGGAGAGAGTCCTCCAGAGCTCCTTCCTGTATGAGCATTTGACTTTCTTCCCGGGTTTATGAGGTAAAGGAACCGCAGCGGGCCAATAAAAGCGTCCCTGTTAGGACTCCTAAAGGTGCTTGGAGAAGAGACTCTGCAAATAAACTGCTGTCTTGGACAATTTTGGGTTATAGGAGCAAAGAGATGGACACATCCAAGACCAACCTCAAAATGGACAAATGCTGTATGTGATTTAATTATTTACACTTCATAAGTGCATAGAACGCTTCTTACATTCATCCGTGATGATCATCAGGTCTACATAGCAGGCAGCTTATCCATCAGGATTCGCTTAAAACCAGTTCATGTCATTAAATAggctttgtttttaaagaaggTAACAGCTGCTTCCTTTTTTATGTTGGATCTTAAAAAGAGCAAATAATGTGTCATTACTTCTGTGTGTAGTGCATGCATATGAAACTATTTAATAAAAGTAACTGTGAAATTAAA

Function

NR:

description
UPF0454 protein C12orf49 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039803686.1 True 1690 mRNA 0.44 5 30263603 30267073

Neighbor

gene id symbol gene type direction distance location
tesca tesc coding upstream 41078 30197629 ~ 30222525 (+)
zgc:112294 LOC104923678,LOC103369777,LOC100697282 coding upstream 189006 30071764 ~ 30074597 (+)
selenoe LOC104961905,LOC101066385,LOC105931211,LOC108246935,LOC103369776 coding upstream 192048 30069411 ~ 30071555 (+)
scarf2 scarf2 coding upstream 204799 30037552 ~ 30058804 (+)
hscb hscb,LOC102796510 coding upstream 642945 29607238 ~ 29620658 (+)
rfc5 rfc5 coding downstream 256996 30524069 ~ 30530383 (+)
pebp1 pebp1 coding downstream 287940 30555013 ~ 30557814 (+)
suds3 suds3 coding downstream 381300 30648373 ~ 30657730 (+)
srrm4 srrm4 coding downstream 502352 30769425 ~ 30835681 (+)
hspb8 hspb8 coding downstream 571153 30838226 ~ 30849481 (+)
G65792 NA non-coding upstream 40527 30206616 ~ 30223076 (+)
G65777 NA non-coding upstream 111516 30151772 ~ 30152087 (+)
G65771 NA non-coding upstream 166447 30096930 ~ 30097156 (+)
G65770 NA non-coding upstream 168857 30091698 ~ 30094746 (+)
G65748 NA non-coding upstream 325458 29937854 ~ 29938145 (+)
LOC120559990 NA non-coding downstream 120091 30387164 ~ 30387819 (+)
G65881 NA non-coding downstream 150440 30417513 ~ 30421446 (+)
G65883 ksr2 non-coding downstream 164313 30431386 ~ 30431741 (+)
G65890 vsig10 non-coding downstream 272744 30539817 ~ 30540839 (+)
G65951 NA non-coding downstream 487286 30754359 ~ 30837774 (+)
LOC120560820 NA other upstream 12084 30246887 ~ 30251519 (+)
fbxo21 fbxo21 other upstream 51495 30186848 ~ 30212108 (+)
ubac1 ubac1 other upstream 911847 29344580 ~ 29351756 (+)
mboat4 NA other upstream 1414132 28845626 ~ 28849471 (+)
G65084 lipg other upstream 2892644 27205234 ~ 27370959 (+)
G65899 taok3 other downstream 307013 30574086 ~ 30578159 (+)
LOC120561064 NA other downstream 590507 30857580 ~ 30893280 (+)
dmrt3a dmrt3 other downstream 1540722 31807795 ~ 31811553 (+)
adamts3 adamts3,LOC100699019,LOC101479253,LOC102313231 other downstream 1765503 32032576 ~ 32209534 (+)
G66231 NA other downstream 1859220 32126293 ~ 32136966 (+)

Expression


Co-expression Network