srp19 (srp19)


Basic Information

Item Value
gene id srp19
gene name srp19
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 15409196 ~ 15415459 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039803722.1
GTCGTACATTAAATCAAGCGCACCTACAACTGTCAACAGTGTTGTGCATGTGGAGCGCGGCCGTATGGCTGCGTGGTTTACGGCAATCAAACCGTGTCGATAGTCGCTATAATCAGCAAAGACTCAACCGTCTGCAGTCAGACGAAAAACAGAACTGACTAACAATGGCTCATCTAACACAAAACCCCGCTGACAAAGAGAGGTTTATCTGCGTCTATCCCATCTACATCAACAGTAAGAAGACGCTGGCTGAAGGACGGAGGATCCCCGCAGAGAAGGCTGTGGAAAATCCGTCCTGTGCTGAGATCCGAGACGTGTTGACGGCAGCTGGCATGAATGTCTACGTGGAGAACAAAATGCACCCCAAAGAGTGGAACAGGGACGTCCAGTTCAGAGGACGTGTCCGAGTTCAGGTGAAGCAGGCGGACGGGAGCCTTTGTCAGGACAAATTCACCTCCCgcaAAGATGTGATGTTTTATGTAGCAGAGATGATCCCTAAACTAAAGACTCGGACCCAGAAAAGTGGAGGAGGAGACACCAGCTCTCAGcaaggagagggaggaaagaagagcaagaaaaagaagaaataaaggcatagacattttcttttttaaattaatttttacaTTTGAGTGTCGGGCAGAATCAAACCCTCAACTTATACTGAAGTTTTGTGGgtttctatttcattttttttaaggagtttGTTGTCATCGAGACTTCAGAAACTCGTTCATCTGCAGGCttacaaaattaaaatatatctgTTTCCCCTTAAATCCTTATATTTTGACTCGACAGAACATTTCTCTAACCTGAGACCTGTGAAACCTGCTCACAGCTGATCTTGTAGTTTCCAAAAACACGGAGAAAGGAACTCATTTCTGTGTTATTTCAAATTTCAGAGTGGATGGTGTGCATCTTTTGCTTCTGTTTAATACCTTATCCCTCCTTACCcacattttgtaaaatgtgtttttctttgaagACCAGATGAATAAAGAGTTCATTTTCTCACCTT

Function

symbol description
srp19 Predicted to enable 7S RNA binding activity. Predicted to be involved in SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition. Predicted to act upstream of or within SRP-dependent cotranslational protein targeting to membrane. Predicted to be located in cytoplasm. Predicted to be part of signal recognition particle, endoplasmic reticulum targeting. Orthologous to human SRP19 (signal recognition particle 19).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006614 SRP-dependent cotranslational protein targeting to membrane biological_process
GO:0048500 signal recognition particle cellular_component
GO:0008312 7S RNA binding molecular_function

KEGG:

id description
K03105 SRP19; signal recognition particle subunit SRP19

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039803722.1 True 1021 mRNA 0.43 5 15409196 15415459

Neighbor

gene id symbol gene type direction distance location
rsph14 NA coding downstream 895 15403848 ~ 15408301 (-)
si:dkey-220o5.5 NA coding downstream 45255 15343423 ~ 15363941 (-)
LOC120560836 LOC103398011,LOC102234551,LOC103373450,LOC107386141,LOC101064581 coding downstream 92134 15309058 ~ 15317062 (-)
ercc6l LOC102777350 coding downstream 197492 15202139 ~ 15211704 (-)
adam9 adam9 coding downstream 209846 15158381 ~ 15199350 (-)
LOC120560845 NA coding upstream 56611 15472070 ~ 15502444 (-)
LOC120560846 LOC104943351 coding upstream 88915 15504374 ~ 15514901 (-)
LOC120560851 NA coding upstream 154240 15569699 ~ 15577254 (-)
LOC120560852 NA coding upstream 165833 15581292 ~ 15590436 (-)
LOC120560853 NA coding upstream 175886 15591345 ~ 15602271 (-)
G61813 mak16 non-coding downstream 103129 15303729 ~ 15306067 (-)
G61742 NA non-coding downstream 228777 15152994 ~ 15180419 (-)
G61740 NA non-coding downstream 279233 15106265 ~ 15129963 (-)
G61711 NA non-coding downstream 340303 15068542 ~ 15068893 (-)
G61706 NA non-coding downstream 381801 15026519 ~ 15027395 (-)
G61837 ppp2cb,LOC102205414,LOC106587035,LOC100710281,LOC105025380 non-coding upstream 10092 15425551 ~ 15427495 (-)
G61894 LOC103373661,LOC101481450,LOC102205139 non-coding upstream 43374 15458833 ~ 15462921 (-)
LOC120560849 NA non-coding upstream 126373 15541832 ~ 15544351 (-)
G61956 NA non-coding upstream 358220 15773679 ~ 15777138 (-)
G61993 NA non-coding upstream 522517 15937976 ~ 15939248 (-)
LOC120560838 NA other downstream 6872 15369026 ~ 15402324 (-)
mfsd14bb LOC103398013,LOC102210719 other downstream 131012 15252615 ~ 15278184 (-)
LOC120560831 NA other downstream 176503 15224970 ~ 15232693 (-)
sdhaf1 sdhaf1,LOC102800057 other downstream 190774 15216550 ~ 15218422 (-)
tti2 tti2 other downstream 367816 15029876 ~ 15041380 (-)
LOC120560105 LOC103362503 other upstream 736961 16152420 ~ 16452488 (-)
G62064 NA other upstream 1089167 16504626 ~ 16505067 (-)
LOC120561322 NA other upstream 1133158 16548617 ~ 16551175 (-)
LOC120560425 NA other upstream 1668020 17083479 ~ 17085821 (-)
G62194 NA other upstream 1708537 17123996 ~ 17124477 (-)

Expression


Co-expression Network