LOC120560841 (ppp2cb,LOC100710281,LOC105920955,LOC101157601,LOC103131405)


Basic Information

Item Value
gene id LOC120560841
gene name ppp2cb,LOC100710281,LOC105920955,LOC101157601,LOC103131405
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 15416456 ~ 15430582 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039803723.1
AGCTCTTTTAGCAAATCGGCTAGTCGCTGCGACGCCGCTGCTTCTCGCCGCTACGGTCTGTCGCATCGGGGACATTCGACCCTTTTGACACCCCCGGCCAATATAATCTGTTTTTTAACGTTGGTAACTTGACGTAGGTAATTTATCATGATAGAAGTTGACCGAACGGCTCGTTAATTTTAGGTCTTATCGTTGATTTTCCAACCGATTTGGCGGGACTAGATCGGGTTAACAATACGACGAGCTAAAGGCTAAAGCAGCTAGCTTTGAGACTCAGGCCAGTTTTTTTTCAGGTAGCTAACACAGCTAGCTCAGCGAGCTACCGCGGCTGTCATGGAAGACAAATCTTTTACTAAAGATTTAGACCAATGGATCGAACAGCTAAATGAGTGTAAGCAGCTCTCGGAAAACCAAGTCAGGACACTCTGCGAGAAGGCCAAGGAGATTCTGACCAAGGAGTCCAACGTTCAGGAGGTGCGATGCCCCGTGACGGTTTGTGGCGACGTCCACGGTCAGTTCCACGACCTGATGGAGCTGTTTAAGATCGGAGGCAAGTCTCCCGACACCAACTACCTGTTCATGGGAGACTACGTCGACAGAGGCTACTACTCTGTGGAGACGGTCACTCTGCTCGTCACGCTAAAGGTTCGTTTCCAGGAGCGAATCACCATCCTGCGAGGGAACCACGAGTCGCGGCAGATCACGCAGGTCTACGGCTTCTACGATGAGTGCCTGAGGAAGTATGGCAACGCCAATGTCTGGAAGTACTTCACAGACCTGTTTGACTACCTGCCTCTCACCGCGCTGGTGGACGGACAGATCTTCTGTCTCCACGGAGGTTTGTCTCCCTCCATAGACACTCTGGATCACATACGCGCTCTGGACCGCCTGCAAGAAGTCCCACATGAGGGCCCGATGTGTGACCTGCTGTGGTCAGACCCTGATGATCGTGGTGGGTGGGGCATCTCTCCCCGAGGTGCCGGCTACACCTTCGGACAGGACATCTCTGAAACCTTTAACCACGCCAACGGCCTCACTCTGGTGTCCCGCGCCCATCAGCTGGTCATGGAGGGCTACAACTGGGGCCATGATAAGAATGTGGTGACCATCTTTAGTGCTCCAAACTACTGTTACCGCTGTGGAAACCAGGCAGCCATCATGGAACTGGACGACACTCTGAAATACTCTTTTCTTCAGTTTGACCCCGCCCCCCGCCGTGGCGAGCCCCACGTGACCAGACGCACTCCTGACTACTTCCTGTGAATGTCCAAAACCATCCCTGTCAATCATCTACAAACCTCCACCCACCTAACCCCCCACCTCCCCATTTTGGATGGAAAGAagatattaataaaataatactgTACCAGGGAGAATAGAAATAAACAATTGGCTGATGAACCaagattttaacaaaaagagaaaCCTAAAGAACGGCCCCCTCTACAGTCTTGTTTTCAATATGCTGTCATTAATGCTGTGCTTCTGGGGGAAAAACTATGatctgttttcttttgttttgtttattacaTGTTTGAAAACGAGATAATAAAACTACCAACGTGGACCAAATGTGCCATATTCTGATCCTTTTTACAACATGTACAACGCGCGCAATGTTTCtttctttagtttttgtttctgttttttttggttgttttttagACCAGCACTATAACCCTACCTACCTGACAACGTCACCACCACACCACACTTCTTCTTCATTGCATATGTGCTTTTTTCTGTTGCaagaataattttaaaaaaggaggggaaaaaaggaagaaaaaaaaattgcttcaAGTagtacagctgtcagttttagCTGTCCAGGCTGCAGCCGGTGGTCATCTCAGCAagtatattactgtaatttGAATAAAGACAACAGAcgtatgaaataaaaatgtcctaTTGACAAACTA

Function

symbol description
ppp2cb Predicted to enable protein serine phosphatase activity and protein threonine phosphatase activity. Orthologous to human PPP2CB (protein phosphatase 2 catalytic subunit beta).

NR:

description
PREDICTED: serine/threonine-protein phosphatase 2A catalytic subunit beta isoform

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG:

id description
K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039803723.1 True 1925 mRNA 0.48 8 15416456 15430582

Neighbor

gene id symbol gene type direction distance location
mak16 mak16 coding upstream 110356 15298400 ~ 15306100 (+)
LOC120561495 NA coding upstream 117813 15298542 ~ 15298643 (+)
lrrc2 LOC102210414 coding upstream 164117 15242850 ~ 15252339 (+)
LOC120560530 NA coding upstream 434839 14979874 ~ 14981617 (+)
c5 NA coding upstream 491519 14891572 ~ 14924937 (+)
LOC120560844 LOC104935222,LOC101481450,LOC102294942,LOC106534038,LOC108245882,LOC100710015,LOC107386134 coding downstream 5159 15435741 ~ 15467408 (+)
LOC120560525 NA coding downstream 78340 15508922 ~ 15520405 (+)
LOC120560850 LOC104965067,LOC101155523 coding downstream 127922 15558504 ~ 15562994 (+)
LOC120561471 NA coding downstream 174384 15604966 ~ 15612582 (+)
trnac-gca_19 NA coding downstream 187303 15617885 ~ 15617956 (+)
G61782 LOC106527778 non-coding upstream 40454 15374777 ~ 15376002 (+)
G61770 LOC103398011,LOC102234551,LOC103373450,LOC107386141,LOC106527788 non-coding upstream 101878 15306447 ~ 15314578 (+)
G61757 NA non-coding upstream 175014 15240416 ~ 15241442 (+)
G61754 NA non-coding upstream 191487 15224547 ~ 15224969 (+)
G61756 NA non-coding upstream 191991 15224114 ~ 15224465 (+)
G61867 NA non-coding downstream 102285 15532867 ~ 15572973 (+)
LOC120560847 NA non-coding downstream 108773 15539355 ~ 15539844 (+)
LOC120560848 NA non-coding downstream 110287 15540869 ~ 15545477 (+)
G61966 NA non-coding downstream 531019 15961601 ~ 16045838 (+)
G61968 NA non-coding downstream 604869 16035451 ~ 16056705 (+)
spinb spin1,LOC103373448,LOC108245887,LOC101477468,LOC100698355,LOC106527790 other upstream 63831 15249744 ~ 15352625 (+)
nudt18 nudt18,LOC104957221 other upstream 192441 15219137 ~ 15224015 (+)
G61535 LOC103368073 other upstream 333008 15078874 ~ 15083448 (+)
cntrl NA other upstream 436659 14928373 ~ 14979797 (+)
surf4l surf4,LOC103397973,LOC102307728,LOC100699423,LOC101479701,LOC101465012 other upstream 620513 14774513 ~ 14795943 (+)
zgc:101664 NA other downstream 1126 15431708 ~ 15434935 (+)
LOC120560526 NA other downstream 88198 15518780 ~ 15532796 (+)
mctp1a mctp1,LOC102782783 other downstream 206216 15636798 ~ 15777141 (+)
fam172a fam172a,LOC102785942 other downstream 513116 15943698 ~ 16099484 (+)
LOC120560890 NA other downstream 1037728 16468310 ~ 16475905 (+)

Expression


Co-expression Network