si:dkey-250l23.4 (rnf180,LOC104964874)


Basic Information

Item Value
gene id si:dkey-250l23.4
gene name rnf180,LOC104964874
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 23992653 ~ 24000805 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039803739.1
GATAGGCCAGGCCAGAGGCATGCACTGCTCACCTCCTCTACACTGGAACAGTCCCTCTAAAGAGCTTGCACCTATACATCCAGAAGTAGTGGGAGGCAGAGAGAAGACTTTGGGGAAGATGACAGGGGAAAGACCAGGCTAGTTGGTAGAAGTTGCTTCAGATGTGCTCTGCTGGTGAATGAGGGGCTCAAAAGCATCACCATGAGCTCCCATTTGGAACCCTCTGGTGTTAATGGATCAAGCAGAGTTGGAGGTCGTGGAAATGAAGATGATGGTGAAGAAAACAGCAACAATGAGACTTACACCCCATGCTTAAAGACAGTGAGACCTAGGCTGAGGAGTGCAGATCCAGCCGGAGAGGGAAGGTCGAGCAGTGTGGAGCAGCTGGTGAGACCTGCCCTGCCAGGGAGGAAAGCACACAGAAAGACCTGCATCAAGGACAACAGAggaagatggagagagggaaaTCAAGACAGGGATGAGGAGAGACAAAATGTTGAACACACAGGAGGCAGGGAAAGAGGAAAACAAAGGCAGAGAAAGACTGAAAGAACTGGTACACATGGAGCTGGAGCGCAGGACAGACAGGGAACAGGAAGCGCTGAAAGTTTGTCTAGCAGTAATTCTGAAATCCAATTAAACAGCCCTTTGGAAGGATCGAACAACTTGCAGAGAGGATCCACGTGCCCTAGACCTCTCAGTATTGGCTGCACCCGGAACATCGCTGCCAATTTAAACCCCCAATCCCCTCGGCCAGCAATGAGGTCCATGTCTTCTGCTCTCCCTCAGCCTCCCATCCAAACCAGATCCACACCTCTGTCCCCTCAGAGACTTTCATCCAGAACAGCAGCAGGAGACCTGCACTGCAACCCATTTAGTTCACCCAGAGAGACAGATCCATTCTGGGTGGAGGTGAGAACAGGGACAGCAACTGGACGATTGTCACAAAGCCATCTGACACACATCCCATCTCTCACCAACTCAGAgctaggagaagaagaagaagaggaggaggaggaggacgaggaagaGGACGTGGAAGATGGCGAGGAAGGAGGCAGTGGTGTGACGGAGGTGATAGGTCAAACCATGACATCAGCAGTGGTGCCGCCTTGTGTTCCTTTTCTCCCTGAGAGGAGGATGAATAAAAGAGAGAAGAACAGGATTAAGTGtctgaggaggaggcagaggagaagGGAGAGGTGGAGACAAAGTCAACTGCAGGAGAGCAGACAGAGTTCAACAGGGAACCCATCCAGCAGCAGTAGTGAGGATGATGAGGACATGAGCGCTGGTGACAGAGAAGGTTACATATGCGCTGTGTGTTTGGATGTATACTTCAGTCCTTACATGTGTCACCCCTGCAACCACATCTTCTGTGAACCCTGTCTGAGGACGCTGGCTAAGAACAGCCCCACCAATACCCCCTGCCCCCTCTGCAGAACAATCATCACACATGTCTTCTTCCAGAAGGAGCTAAACCAAACAGCAAGAACATTCTTCCCAAAGGAATACCTTTCCCGGAAACAAAACTTCCAGAAAGCAAGTTGTGCAAAGTGGCCGCTCCCAAGCTGCCGGAAACTCTTCCGTATCTTTGGAGGCTTCCAGAGGCAGTCCAGTCCCATTGCTAGACGCCAGTTCCCCCATGGAGGAGGCTACCGTCTGGATGCTCTGGACTTTGAGGATGACTCTCGAGGCTGGCGTTTTGACATGGACATGGTCATCATCTATATCTACTCAGTCAACTGGGTTATTGGCTTCTTCATATTCTGCTTCCTTTGCTACCTCTTCTTCCCTTCTTTTTGACAGTCATAACTTAAATGATGGAGCAACATGGAAAGAGGAAAGGTTGAGGATACTGAAAGATGAGGGTAAAGTAAGGAACTAAGATGAAGCAGAGGCAcacaagcatatatatatatatatatata

Function

symbol description
rnf180 Predicted to enable ubiquitin conjugating enzyme binding activity and ubiquitin protein ligase activity. Predicted to be involved in norepinephrine metabolic process; positive regulation of proteasomal ubiquitin-dependent protein catabolic process; and serotonin metabolic process. Predicted to act upstream of or within several processes, including adult behavior; positive regulation of protein ubiquitination; and protein polyubiquitination. Predicted to be located in nuclear envelope. Predicted to be integral component of membrane. Predicted to be intrinsic component of endoplasmic reticulum membrane.

NR:

description
E3 ubiquitin-protein ligase RNF180

GO: NA

KEGG:

id description
K15708 RNF180; E3 ubiquitin-protein ligase RNF180

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039803739.1 True 1931 mRNA 0.50 4 23992653 24000805

Neighbor

gene id symbol gene type direction distance location
ipo11 ipo11,LOC102795548 coding upstream 86197 23754325 ~ 23906456 (+)
ercc6l2 ercc6l2,LOC105014104 coding upstream 270124 23704402 ~ 23722529 (+)
dock8 dock8 coding upstream 505147 23408216 ~ 23487506 (+)
LOC120561043 NA coding upstream 638389 23352950 ~ 23354264 (+)
LOC120560302 zswim6 coding upstream 662105 23283079 ~ 23330548 (+)
rgs7bpa rgs7bp coding downstream 3277 24004082 ~ 24013484 (+)
c6h5orf51 clg12h5orf51,LOC104920657,LOC104943311,LOC103366194,LOC101465834 coding downstream 105185 24105990 ~ 24110189 (+)
fbxo4 fbxo4,LOC102798721 coding downstream 109515 24110320 ~ 24117183 (+)
ghra LOC103366197 coding downstream 126058 24126863 ~ 24162470 (+)
znf131 znf131,LOC102798529 coding downstream 173636 24174441 ~ 24181811 (+)
G64130 NA non-coding upstream 242818 23744939 ~ 23749835 (+)
G64127 NA non-coding upstream 257360 23734824 ~ 23735293 (+)
LOC120560908 NA non-coding upstream 549340 23431481 ~ 23443313 (+)
G64026 NA non-coding upstream 560180 23430690 ~ 23432473 (+)
G63976 smim15,LOC106580593,LOC103398561 non-coding upstream 711544 23274920 ~ 23281109 (+)
G64172 NA non-coding downstream 14273 24015078 ~ 24017068 (+)
G64183 NA non-coding downstream 49163 24049968 ~ 24058761 (+)
G64188 NA non-coding downstream 100701 24101506 ~ 24104352 (+)
G64200 NA non-coding downstream 163872 24164677 ~ 24169528 (+)
G64235 NA non-coding downstream 233469 24234274 ~ 24234488 (+)
G64108 NA other upstream 299362 23692662 ~ 23693291 (+)
LOC120560905 clg12h9orf3,LOC103358904,LOC102294417,LOC101470200,LOC102214270 other upstream 430368 23487967 ~ 23562285 (+)
G63905 NA other upstream 1062448 22929899 ~ 22930205 (+)
LOC120560787 NA other upstream 2393364 21588876 ~ 21599289 (+)
G63480 rbm19 other upstream 3314737 20676417 ~ 20677916 (+)
prxl2c aaed1 other downstream 820509 24821314 ~ 24823066 (+)
cdc14b cdc14b,LOC102776968,LOC103141798,LOC106948523 other downstream 822913 24823718 ~ 24837448 (+)
LOC120561182 LOC104948667,LOC104930137,LOC103397628,LOC103366370,LOC107092578,LOC102226292,LOC106956829,LOC106919698,LOC103470079,LOC103141747 other downstream 1684159 25684964 ~ 25696576 (+)
LOC120560031 LOC104941040,LOC103357154,LOC102795853 other downstream 1913474 25914279 ~ 25915577 (+)
LOC120560359 NA other downstream 1925282 25926087 ~ 25928596 (+)

Expression


Co-expression Network