zgc:112294 (LOC104923678,LOC103369777,LOC100697282)


Basic Information

Item Value
gene id zgc:112294
gene name LOC104923678,LOC103369777,LOC100697282
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 30071764 ~ 30074597 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039803742.1
CCCTTCATTTCTGTAAAGCTTTAACAAATGTTACATTCTCTAATTAGATAAACAAATGCACTGGGCATCATGAACGGCCGCTTGCTATAACAAACTGCCATGCGGCTGCCTCAGCCTAATCCTCAGCCCGCCTACCTCACTATAATCTGATTAGCAGTGGAGTCTGCCAGCATGCGCCTGAGTGTGTCCATTTATATCCGTGCCTTCATGcatttgtgtacttgtgtgaCTTAAGACAAGGTTTGGCAGGAACACAAACACAGTTTTAGACCGTTACACTTCCTGACTCCTTGGCTCCGTCATTGTCACCACCTCTACCCACAATGCCTGTGTTTTACTCACCTGTTCCCGAGAACCTGCAGATGGGTCTGGCCTATATGGGAGGCTCTGTGTTTACCAACAACAGGACAGCAGACAGTGACTTCACCAGGCAGCAGGAGGACGCGTCTGTGGTCAACGAGCTGGTTTCTTACCTTCCCCTGCAGATGCTTCTTTActtcaacatgttttattttcccTGTTGGtggttttctgctgttttcatgtTGGAAGTCAAGTTCTATTATCTTCCTGGGTACTACCAGGCTCTGCTTATAACCGGGATGATCCTCCTCACAGTCATTGAAGCGGTCAGACTTTATCTGGGCTACATTGGCAACCTTAAAGAAAAGGTGCCAGAGCTGGCAGCCTTCTGGCTCCTGTCTTTCATGTTTCAGCTgccagtgctgctgttcttccTGACCGATGAAGGAATTATCATCCTGCCTCTAGAGAGAGCTGTGCACTCCCTCTACCTCCTCTTCCTGCTCGCCCAGATTCTGACTTCCTTCCTGGCTCTCAGGACCATGACCCGAAAGCTCACACTGCTCTTCCATCTGCGCCAGTTTGGCAAGGTGGAGAACTTTCGCCACGCTGGGATGAGCCCTGTCTACGGGCTGCCCTACCACCGCAGTGTGCTGCCCATGTCACCCACCCATAATATGTACCATTAAAGTCAAAATTTCCTTTTCCAATTAACCTTACACTTGTCTCTCTAATTTACAGTACTGTTTGTCTACTTACGATTTCGAAAACTGCATTATGTGCTTCCCCAAATGCCTCTCTGCAATTGCCAGAGAACAAATGTGAGTTTGTTACTTGAAATTGGGAGCATTTAAATACAACTATCCAACTAA

Function

NR:

description
transmembrane protein 17A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039803742.1 True 1175 mRNA 0.47 4 30071764 30074597

Neighbor

gene id symbol gene type direction distance location
selenoe LOC104961905,LOC101066385,LOC105931211,LOC108246935,LOC103369776 coding upstream 209 30069411 ~ 30071555 (+)
scarf2 scarf2 coding upstream 12960 30037552 ~ 30058804 (+)
hscb hscb,LOC102796510 coding upstream 451106 29607238 ~ 29620658 (+)
col27a1b LOC100698351 coding upstream 488195 29514026 ~ 29583569 (+)
LOC120560080 LOC104962503,LOC102314469,LOC102076298,LOC103353443 coding upstream 567813 29496780 ~ 29503951 (+)
tesca tesc coding downstream 123032 30197629 ~ 30222525 (+)
spring1 clg12h12orf49,c21h12orf49,LOC101487986,LOC104923683,LOC102233336 coding downstream 189006 30263603 ~ 30267073 (+)
rfc5 rfc5 coding downstream 449472 30524069 ~ 30530383 (+)
pebp1 pebp1 coding downstream 480416 30555013 ~ 30557814 (+)
suds3 suds3 coding downstream 573776 30648373 ~ 30657730 (+)
G65748 NA non-coding upstream 133619 29937854 ~ 29938145 (+)
G65747 NA non-coding upstream 133921 29937617 ~ 29937843 (+)
G65745 NA non-coding upstream 134769 29935893 ~ 29936995 (+)
G65738 NA non-coding upstream 259546 29811972 ~ 29812218 (+)
G65734 NA non-coding upstream 299900 29771639 ~ 29771864 (+)
G65770 NA non-coding downstream 17101 30091698 ~ 30094746 (+)
G65771 NA non-coding downstream 22333 30096930 ~ 30097156 (+)
G65777 NA non-coding downstream 77175 30151772 ~ 30152087 (+)
G65792 NA non-coding downstream 132019 30206616 ~ 30223076 (+)
LOC120559990 NA non-coding downstream 312567 30387164 ~ 30387819 (+)
ubac1 ubac1 other upstream 720008 29344580 ~ 29351756 (+)
mboat4 NA other upstream 1222293 28845626 ~ 28849471 (+)
G65084 lipg other upstream 2700805 27205234 ~ 27370959 (+)
ndufs4 ndufs4 other upstream 3032165 27012210 ~ 27039599 (+)
si:dkey-178e17.1 slc25a1,LOC100697273,LOC101470788,LOC103359526,LOC102784907,LOC107394264,LOC103145904 other upstream 3409869 26644661 ~ 26661895 (+)
fbxo21 fbxo21 other downstream 112251 30186848 ~ 30212108 (+)
LOC120560820 NA other downstream 172290 30246887 ~ 30251519 (+)
G65899 taok3 other downstream 499489 30574086 ~ 30578159 (+)
LOC120561064 NA other downstream 782983 30857580 ~ 30893280 (+)
dmrt3a dmrt3 other downstream 1733198 31807795 ~ 31811553 (+)

Expression


Co-expression Network