LOC120560868


Basic Information

Item Value
gene id LOC120560868
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 8331385 ~ 8402569 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039803746.1
ACCGCTCCAGTGTTGGTATTTGGCCGAAGAGACTCCGAGACAGACGCAGCGCTACAGGACATCAGGTATACTGTCTGAGATGAAGCTGAACGTGTTGTTGGGGGTCGGGGCTCTGCTTGCCGTCTTCCTCCCTCGCTCTGCTGACTGTCGCCCCGCCGATGCAGATGCCGCTGTTGCCACGCCAACAGGCCTACACCTCCCCCGGCCGCTGCTGCTCCCGCGGCCGCTGCTGCTCCACCTCGGGGAGGAGTTCTCCCTCCGGCTGGGGGGAGGCTCTGctgcctcctctccctctccctcttcctcttcctcttcctcttcctcagcgGTGAACGTGGCGCTGCTGCGGCTGACGCAGCGCCTCCTGCAGGCGCGCGCCGAGcagcaggaagaggagaaggagaagcgGTCCGAGGAGTCTCCCATCTCTCTGGACCTGACCTTCCACCTGCTGAGAGAAGTTCTGCAGATGGCGCTCGCTGAGCAGCAGGCGCTGCAGGCCGACAGCAACCGCAGGATGATGGACACGGCCGGGAAATGATCCAGGACGCTCTGCACCTCCTGTCCCTCGCCGTAACCAGAGCCCATCTACGGAGAGCCATTTCACTTCCCattaagccccattgtaccgaatttggttgcagttcccccatagttccactgggggtgattgCAGGCGagtgctaaatgaatgggagtctatggagctagtcggctaaatttgtctctttcgcctgattgtcgttgagaaatctcagatttgattgtagtttttgcaagttcaacatggattataggtcgaaagttgaatgaaccagtacttatgtcctttgaATTGCTTACAGGTTGAgttgttgttgcccataacacgctagcattctgctaatgaatgctgattggtcagtgaaggactgattacgaccaGAGGTCCTGCTTGATGGCATCCACATTCTCTGAAGTGACTCAGAGCCGTAAAGCAGTATATCTGGCCGtacatatgtgtatgacgtcattgacattttaaaaaggctttttagaacaaacaaaaaaaacacttcttctacaaatctaacacccagcagtgtgtattttctcagcctcccctttcgaatgcaacattaaaattactagacaaaaaattatatcctgagaaaagtggactTTGAGGGCTATAACGctatagagtcccattcattctgcactggcccgTGAGCTCCATAGACcttcattcattctgcactggcccgTGAGCTCCATAGACcttcattcattctgcactggcccgtgagctccatagagtcccattcattctgcactggcccaTGAGCTCCATAGAccaccattcattctgcactggcccgTGATCTCCATAGACCACCATTCATTTTGCGCTGGCCCGTCAGCTccatagacctccattcattctgcactggccctTGAGCGCCCCCTCTAGTGGAAAgagagtggaactgcaaccagttcagaagccggaagtgtCCCGAGAGAGTGGATCCATTATTAGATATTCTCTGCCGTAACCTCGGGACTTTCTACTTCCTGTCCAgtgtttttatcattttatggTTTTCATTAAAGCTGCAACTGCTGATTATTAAACTGATGTTGCCCTAA
>XM_039803747.1
gctaggcgagcattataacgtgtgttacaaagtgacgcatgtttgtctctgaagtaaaggctggactacaatagagctgtttgtgaACACTGTTTTCTGCTGGAGaagGTATACTGTCTGAGATGAAGCTGAACGTGTTGTTGGGGGTCGGGGCTCTGCTTGCCGTCTTCCTCCCTCGCTCTGCTGACTGTCGCCCCGCCGATGCAGATGCCGCTGTTGCCACGCCAACAGGCCTACACCTCCCCCGGCCGCTGCTGCTCCCGCGGCCGCTGCTGCTCCACCTCGGGGAGGAGTTCTCCCTCCGGCTGGGGGGAGGCTCTGctgcctcctctccctctccctcttcctcttcctcttcctcttcctcagcgGTGAACGTGGCGCTGCTGCGGCTGACGCAGCGCCTCCTGCAGGCGCGCGCCGAGcagcaggaagaggagaaggagaagcgGTCCGAGGAGTCTCCCATCTCTCTGGACCTGACCTTCCACCTGCTGAGAGAAGTTCTGCAGATGGCGCTCGCTGAGCAGCAGGCGCTGCAGGCCGACAGCAACCGCAGGATGATGGACACGGCCGGGAAATGATCCAGGACGCTCTGCACCTCCTGTCCCTCGCCGTAACCAGAGCCCATCTACGGAGAGCCATTTCACTTCCCattaagccccattgtaccgaatttggttgcagttcccccatagttccactgggggtgattgCAGGCGagtgctaaatgaatgggagtctatggagctagtcggctaaatttgtctctttcgcctgattgtcgttgagaaatctcagatttgattgtagtttttgcaagttcaacatggattataggtcgaaagttgaatgaaccagtacttatgtcctttgaATTGCTTACAGGTTGAgttgttgttgcccataacacgctagcattctgctaatgaatgctgattggtcagtgaaggactgattacgaccaGAGGTCCTGCTTGATGGCATCCACATTCTCTGAAGTGACTCAGAGCCGTAAAGCAGTATATCTGGCCGtacatatgtgtatgacgtcattgacattttaaaaaggctttttagaacaaacaaaaaaaacacttcttctacaaatctaacacccagcagtgtgtattttctcagcctcccctttcgaatgcaacattaaaattactagacaaaaaattatatcctgagaaaagtggactTTGAGGGCTATAACGctatagagtcccattcattctgcactggcccgTGAGCTCCATAGACcttcattcattctgcactggcccgTGAGCTCCATAGACcttcattcattctgcactggcccgtgagctccatagagtcccattcattctgcactggcccaTGAGCTCCATAGAccaccattcattctgcactggcccgTGATCTCCATAGACCACCATTCATTTTGCGCTGGCCCGTCAGCTccatagacctccattcattctgcactggccctTGAGCGCCCCCTCTAGTGGAAAgagagtggaactgcaaccagttcagaagccggaagtgtCCCGAGAGAGTGGATCCATTATTAGATATTCTCTGCCGTAACCTCGGGACTTTCTACTTCCTGTCCAgtgtttttatcattttatggTTTTCATTAAAGCTGCAACTGCTGATTATTAAACTGATGTTGCCCTAA
>XM_039803748.1
cacgctggtctcttttctgtaaataggctacaattaaaccttcGTATACTGTCTGAGATGAAGCTGAACGTGTTGTTGGGGGTCGGGGCTCTGCTTGCCGTCTTCCTCCCTCGCTCTGCTGACTGTCGCCCCGCCGATGCAGATGCCGCTGTTGCCACGCCAACAGGCCTACACCTCCCCCGGCCGCTGCTGCTCCCGCGGCCGCTGCTGCTCCACCTCGGGGAGGAGTTCTCCCTCCGGCTGGGGGGAGGCTCTGctgcctcctctccctctccctcttcctcttcctcttcctcttcctcagcgGTGAACGTGGCGCTGCTGCGGCTGACGCAGCGCCTCCTGCAGGCGCGCGCCGAGcagcaggaagaggagaaggagaagcgGTCCGAGGAGTCTCCCATCTCTCTGGACCTGACCTTCCACCTGCTGAGAGAAGTTCTGCAGATGGCGCTCGCTGAGCAGCAGGCGCTGCAGGCCGACAGCAACCGCAGGATGATGGACACGGCCGGGAAATGATCCAGGACGCTCTGCACCTCCTGTCCCTCGCCGTAACCAGAGCCCATCTACGGAGAGCCATTTCACTTCCCattaagccccattgtaccgaatttggttgcagttcccccatagttccactgggggtgattgCAGGCGagtgctaaatgaatgggagtctatggagctagtcggctaaatttgtctctttcgcctgattgtcgttgagaaatctcagatttgattgtagtttttgcaagttcaacatggattataggtcgaaagttgaatgaaccagtacttatgtcctttgaATTGCTTACAGGTTGAgttgttgttgcccataacacgctagcattctgctaatgaatgctgattggtcagtgaaggactgattacgaccaGAGGTCCTGCTTGATGGCATCCACATTCTCTGAAGTGACTCAGAGCCGTAAAGCAGTATATCTGGCCGtacatatgtgtatgacgtcattgacattttaaaaaggctttttagaacaaacaaaaaaaacacttcttctacaaatctaacacccagcagtgtgtattttctcagcctcccctttcgaatgcaacattaaaattactagacaaaaaattatatcctgagaaaagtggactTTGAGGGCTATAACGctatagagtcccattcattctgcactggcccgTGAGCTCCATAGACcttcattcattctgcactggcccgTGAGCTCCATAGACcttcattcattctgcactggcccgtgagctccatagagtcccattcattctgcactggcccaTGAGCTCCATAGAccaccattcattctgcactggcccgTGATCTCCATAGACCACCATTCATTTTGCGCTGGCCCGTCAGCTccatagacctccattcattctgcactggccctTGAGCGCCCCCTCTAGTGGAAAgagagtggaactgcaaccagttcagaagccggaagtgtCCCGAGAGAGTGGATCCATTATTAGATATTCTCTGCCGTAACCTCGGGACTTTCTACTTCCTGTCCAgtgtttttatcattttatggTTTTCATTAAAGCTGCAACTGCTGATTATTAAACTGATGTTGCCCTAA

Function

GO: NA

KEGG:

id description
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039803746.1 False 1632 mRNA 0.52 2 8397481 8402569
XM_039803747.1 True 1675 mRNA 0.51 2 8331385 8402569
XM_039803748.1 False 1610 mRNA 0.51 2 8399670 8402569

Neighbor

gene id symbol gene type direction distance location
bicdl1 bicdl1 coding upstream 127199 8172560 ~ 8204186 (+)
LOC120560501 mtmr3,LOC103152423 coding upstream 248011 8078302 ~ 8083374 (+)
mtmr3 mtmr3 coding upstream 253217 8055365 ~ 8078168 (+)
rad9b NA coding upstream 417865 7904789 ~ 7913520 (+)
LOC120560606 NA coding upstream 426791 7898563 ~ 7904594 (+)
LOC120560486 LOC107690107 coding downstream 62602 8465171 ~ 8482178 (+)
zgc:110329 LOC103366798,LOC104939353,LOC104956029 coding downstream 407985 8810554 ~ 8836973 (+)
slc4a5a slc4a5,LOC100703988,LOC101470466,LOC102293566,LOC102195261 coding downstream 459401 8861970 ~ 8907724 (+)
zgc:113436 LOC102776507 coding downstream 519714 8922283 ~ 8933253 (+)
LOC120560802 abcb9,LOC106965289 coding downstream 537260 8939829 ~ 8965106 (+)
G60109 NA non-coding upstream 4432 8325053 ~ 8326953 (+)
G60080 NA non-coding upstream 18272 8302258 ~ 8313113 (+)
G60084 gcn1 non-coding upstream 92597 8232004 ~ 8238788 (+)
G60082 NA non-coding upstream 104212 8226892 ~ 8227173 (+)
G59931 pptc7,LOC106585473,LOC104951761 non-coding upstream 406829 7920777 ~ 7924556 (+)
G60147 NA non-coding downstream 15073 8417642 ~ 8417850 (+)
LOC120560009 NA non-coding downstream 26384 8428953 ~ 8431230 (+)
LOC120560008 NA non-coding downstream 32172 8434741 ~ 8437598 (+)
trnaw-cca_2 NA non-coding downstream 41885 8444454 ~ 8444525 (+)
trnaw-cca_3 NA non-coding downstream 43049 8445618 ~ 8445689 (+)
cux2b cux2,LOC102795992 other upstream 280045 7947252 ~ 8051340 (+)
atp2a2a atp2a2,LOC102794349,LOC101476777,LOC102310403 other upstream 453014 7847671 ~ 7878371 (+)
zbtb26 LOC104940087,LOC100710858,LOC102306976,LOC102206222,LOC101473380,LOC102792103 other upstream 701205 7625736 ~ 7630180 (+)
susd1 susd1 other upstream 707670 7600092 ~ 7623715 (+)
LOC120560567 ier3ip1,yee9,LOC103361062,LOC100710589,LOC107393509,LOC105014506,LOC103152384 other upstream 755249 7574725 ~ 7576136 (+)
LOC120560006 NA other downstream 20620 8423189 ~ 8427745 (+)
LOC120560007 NA other downstream 28968 8431537 ~ 8434672 (+)
vps37ba vps37b,vps37c,LOC102776795 other downstream 588872 8991441 ~ 9014903 (+)
ppp3cca LOC104934810,LOC100705072,LOC105915415,LOC101486266,LOC102777092,LOC103366803,LOC102200614,LOC101072650,LOC106932221 other downstream 615322 9017891 ~ 9055765 (+)
LOC120560959 golga7,LOC104937560,LOC106585131 other downstream 1524381 9926950 ~ 9981054 (+)

Expression


Co-expression Network