LOC120560913 (gdnf,LOC103362940,LOC102209597,LOC101471543,LOC102304722,LOC106526208)


Basic Information

Item Value
gene id LOC120560913
gene name gdnf,LOC103362940,LOC102209597,LOC101471543,LOC102304722,LOC106526208
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 21278402 ~ 21282508 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039803803.1
TGTTTAAAAGTCATGCCAAAGAAATCTGATGAAATGACACTTTACATCTCGGATTAAgcaaaaaccaaaccaaaataaCGTTTTCTACTGTAAAACGTTAAACACCCAGTTGCTGTAATGAATATCAGCTCAGGCTTCCTTGATATAATCTGCTCATCAGCTgccaaaaaaacatgatttcaaGCTCACTGTGGTTATAAGTAGCAACACAATCCACTCAGTCTGTTTTGACTGGCTGATTAGAAACACGTTCCCCATCCAAAGTCAACCAAACACAAAAAGCAGGATGGGAAATCAGGAGTATTGATAGTGGAAAGTGTGAAACTTCTCTCAGCCATCTGAGTACACAGACTGAGCCTCTTTCATAACATAACCCCTCTACCCTCACCAACTCTGGACCTTAAGTTCAATCATGAATATAGACTCCATTCCTCTGTGAAGTCTGCATGGGTGGAGACAGGAAGAAGTAGGCCTAGAGGATGGACCATCAGACGTCACAAGCACTTCCCATCTCTCCTGTAGacctctccttctcctcaggGCTCAGTCAGGATTGATGGTGAGTGGGGATGTGCAGGAGTCACTGCATTGTGCCAGAGGAACCGTGCGCACTGAATGAAAACCTGTAGACTGTAAACAGggactatttttttcttttcttccaagCGTCGATGGATTTGCAAACAACTTCAGAGGGAAGTCTTTGCTTTCCGTTTTGCTCTTCTGCCTTTGCTTTCGAGCCTTCTTGGATGTTGCGCCACGCTGCAAAGCGTTTGCCAGCTGGCATCTGAGTGATAGCGTGCAGTTTACAGTACGCAGGCATTAACACAATGATCTTCCCAATTTCCAGTGGCTGGAACCCAAGCCGATGAGTGCGCCCCACCTTTTCCTCTCCAACTATTGGACGTCTTCAATATGCTGTTAATCGCGTTTGCCAGATGATACCTGTTGGTTTTTTATCGCGCCATGTCCTTCTGTCGGACTGAAGTGGACAATGAAGTTATGGGATAGCCTGACCATTTGTTTGATACTGCTGAGCGCCGTGCACGCCAGCCGGCTTCTACGGAGCCGACCGCAGTCCACGTCCTCCAAGAGGAGAGGGCGCGCCGCCGAGAGTCCCCTGGAGCTCCCGCCGGTTGAGATCCGCCTGTCTGTCACTTCCCCGGGCATCAGCCGCGCTGAGGCGGATACAACGGACTGGGAAGAGACGCTGGCTGGAGGGGGAAAATACACAATGGAGGAGCCCCTCCCAAGTCAGTTTGAAGATGTGGTGGACTTCATCAAAGTGACCATCAGTAGAATACGTCGCTCCTCCTCATCCACCGTGTACTCAtccacctcctccccctccaAACTAGACTTGAACAGCAGGACTCGACACAGACGGGAGAGGAAGAAGGGGACAGGCCAGcagagtggaggaggaagaggaagagctaGAGGAGGGAAGACAGGGAGGAAGGTTAGGGAAGGAAAAGCTAACCGACGAGGACAGGGCTGTGTGCTCAAACAGATCCACCTTAATGTGACAGACCTCGGTTTGGGCTACCGCTCCAGCGAGGAAATGATATTCAGGTACTGCTCCGGACCCTGCAGGAAGTCTGAGACCAACTACGACAAAATCCTTAACAACCTCGCTCACAACAGGAGGCTTCCTCCTAAAGACACGCCCCCTCAGGCTTGCTGTCGGCCAATAGCATTTGATGATGACCTCTCGTTTCTGGACGACAACCTCGTCTACCACACTGTGAGGAAGCACTCTGCTAGGAAATGTGGTTGTGTGTAGAGAGTGTGAGCTGGTGTCAGGCTTTGTGTTGAAGTGAGTGTTTTGTCTTCTGATTTACCTCTTTATGAGCAAACTTTCAGGCATTATGTGTGGCCATATGACTTGAGTCCATCGGTAAAGGAGTTAATAAGTAGAGGACGTGGCGTCTACAGTTTTTTCCCCAAAGCAAAgatcctcttcttctcttcctccatcaaaattatatttatattataattcCTTTACAGTTCACACCTTTCATACGTCACTAATATGTTCAGTGGGATTTTAAATGTTTCAATGGATACTCAACCTAAAGGACTGAAATCAGACACAATGGATGATTCAGCAGACTCATTCTGTCTACTGTATAGCACATATGTTACATGGAAAAGGTTATACATATGAAATGTATTTATGAAATCTTGAATATATTAACTtattgatatttattttgtttttataaaaggaATACGTTATTTATTGTAATATGATATCTCATGATATCTTTGCCAAAAGGTTTAACTAAAAGGGGTTGGTGGTATATTTCCAAATAAAAGCAGTAAAAGACTGGGTGGTTTACATTGCAAAATCTTTTAGGTGCCCCGTGGAGTTGTCTTGTAAACAAAGTTATGTGTGCATTCAGTGTTTCTCACCAATATGCATTTTGTGTATCCTTGAGGTCTAACAAAAGAGTTTAATATACAATATTTtcttcctcataaaacatttgcaaagccgattttgaaaaacaattttTAAGTCATGCATTGTTTACATCATCTTCACTAGTTTGCATTCTTCTTTGCTGTTGCATTGCTACGTGGCTTGTTACCATCACCAATTGTCGATCAGCGGAATATCTGAAACTGGTGGCAGGGCGGTGTATTGCATTGCCCACATGATTATActgtacaacaaaaacataacagGGACCTTCTCTTAACAACATTGCTCTATAGCACTACTAGTGGTCTAAAACTCCACAGGACACCTCAAAAGTTTTTCTTCCCGGGAAAACCATTCTCAGTATCTTAGCGTTTACAATGTTCTACAATTTTAGTGTCATTTGACTGCATTGTTTCctgtttatgtttttaattaacAATGTAAGAAAGTAATGTGAGAAAAGCTATATCAAAGCATTTTGTTGTCATGATTAGAAGAATAGTTGTTTATTCACTGCTAATTTCATGTCCTTCTCAGATGAATTGCTGTTAGTGAAACAAGATTTTATCACTTTATAAACGTAACTACAGCTTTATTTTTATA

Function

symbol description
gdnf Enables protein homodimerization activity. Involved in several processes, including negative regulation of apoptotic process; positive regulation of morphogenesis of an epithelium; and regulation of RNA metabolic process. Acts upstream of or within several processes, including neural crest cell migration; neuron projection development; and positive regulation of cell population proliferation. Located in Golgi apparatus and extracellular region. Implicated in Hirschsprung's disease; Parkinsonism; congenital central hypoventilation syndrome; epilepsy; and pheochromocytoma. Biomarker of acoustic neuroma; autoimmune disease (multiple); neurodegenerative disease (multiple); pancreatic cancer; and vasculitis (multiple).

NR:

description
PREDICTED: glial cell line-derived neurotrophic factor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039803803.1 True 3037 mRNA 0.43 2 21278402 21282508

Neighbor

gene id symbol gene type direction distance location
si:ch73-72b7.1 unc5c,LOC102797243,LOC102309063,LOC102212007 coding upstream 228553 20849986 ~ 21049849 (+)
stpg2 NA coding upstream 726583 20499130 ~ 20551819 (+)
LOC120560324 NA coding upstream 877410 20397583 ~ 20400992 (+)
LOC120560540 NA coding upstream 882285 20394843 ~ 20396117 (+)
foxb2 foxb2 coding upstream 896911 20353242 ~ 20381491 (+)
LOC120561163 lmbrd2 coding downstream 111265 21393773 ~ 21403390 (+)
golm1 golm1 coding downstream 121455 21403963 ~ 21410730 (+)
agtpbp1 agtpbp1 coding downstream 145835 21428343 ~ 21458347 (+)
hnrnpk hnrnpk coding downstream 344504 21627012 ~ 21641536 (+)
c6h9orf64 LOC103366756,LOC102204152,LOC102298164 coding downstream 360389 21642897 ~ 21649576 (+)
G63511 NA non-coding upstream 55751 21164816 ~ 21222651 (+)
G63471 NA non-coding upstream 617245 20660840 ~ 20661157 (+)
G63468 NA non-coding upstream 630905 20646192 ~ 20647497 (+)
G63465 NA non-coding upstream 635130 20642917 ~ 20643272 (+)
G63460 NA non-coding upstream 637300 20640758 ~ 20641102 (+)
G63545 nipbl,LOC104950412 non-coding downstream 30245 21312753 ~ 21314091 (+)
G63576 NA non-coding downstream 63859 21346367 ~ 21347517 (+)
G63627 NA non-coding downstream 197272 21479780 ~ 21484666 (+)
G63628 NA non-coding downstream 204261 21486769 ~ 21487038 (+)
LOC120560273 NA non-coding downstream 326315 21608823 ~ 21620711 (+)
G63480 rbm19 other upstream 600486 20676417 ~ 20677916 (+)
wdr31 wdr31,LOC102796061 other upstream 787816 20473651 ~ 20490586 (+)
vps13a vps13a other upstream 836309 20400947 ~ 20442093 (+)
c6h2orf68 c21h2orf68,c9h2orf68,LOC104941594,LOC103363183,LOC104920309 other upstream 1514878 19759596 ~ 19763524 (+)
rasl10a rasl10a other upstream 1829452 19430401 ~ 19448950 (+)
LOC120560787 NA other downstream 306368 21588876 ~ 21599289 (+)
G63905 NA other downstream 1647391 22929899 ~ 22930205 (+)
LOC120560905 clg12h9orf3,LOC103358904,LOC102294417,LOC101470200,LOC102214270 other downstream 2205459 23487967 ~ 23562285 (+)
G64108 NA other downstream 2410154 23692662 ~ 23693291 (+)
prxl2c aaed1 other downstream 3538806 24821314 ~ 24823066 (+)

Expression


Co-expression Network