sart3 (sart3,LOC102781133)


Basic Information

Item Value
gene id sart3
gene name sart3,LOC102781133
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 19087797 ~ 19099604 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039803828.1
GCACGCAACATCACTAGTTACCAGGCAGACAGCTTTTCCAACATGGCAGCGTCAAGCAACGCAGAGCAAACGCAGTTGCAAGATATGGAGGAGGAAGATGCAGGGATGGAGGAGAGGGATATGGAATCGGGCGACGAGCCGGAGGAGGGCATGGGAGAAGAACATTCAGACGAAGAAGAGGATGATTCTTCGGAAGACGAGAAAGAAAATGAAGCTGAGATCCAACGGTTGGAGGAGCAGctgtcaatcaatgcTTTTGACTACAACTGCCACGTGGATCTCATCAAACTACTCAAGCAGGAGGGCGAACTTTCCCGTCTGCGAAAGGCAAGGCAGAAGATGAGTGAGCTTTTCCCACTAACTGAAGagatctggcTAGATTGGCTCAAGGATGAGATCCGTCTGACTGAGGAGGAGTCAAACCGGGAGAAAGTATATGAACTTTTTGAGAAAGCTACAAAAGACTATATTTGTCCAGATATCTGGCTTGAATATGCTCAGTATTCAATTGGTGGCATGGGCTCACCAGGTGGGATAGACAAGGTGAGATCCATCTTCGAGAGAGCGGTGACAGCGGTGGGGCTTCACATGACCAAGGGACAGATGGTGTGGGAGGCGTACAGAGAGTTTGAGAATGTCATTCTGTCCACAGTACAGCCTCCCCCTGGCAGGATTCCCAGCCGCGAGGAGCAGGATCTGTTGAAAACTCAGCTTGATCGTATCCATACACTGTTTCGCCGCCAGCTGGCTATCCCCTTAATGGACATGGAAGCCACCTATGCAGAGTATGAGGAGTGGTCTGAAGATGGGGTGGCTGAGACGGTCATACATCAGTACAAAAAGGCTTTGCAGCAGTTGGCCAAGTGCAAATCTTTAGAAGAATCACTGATAGTAGCAGAGCCTCCTAAACTGGCAGAGTATCAGTCCTACATCGACTTTGAACTAAAGGAGGGCGACCCAGCACGGATCCAGATTATCTTTGAGCGGACCCTGGCAGAGAACTGTCTGGTACCAGACATGTGGGCAAAATACACCACCTATCTTGATCGTCAGCTGAAGATCAAAGATTTGGTTCTCTCCTCTCATGAACGTGCGGTCAGGAACTGTCCCTGGACCATGGGTCTGTGGAAGAGCTACCTGCTAGCTCTGGAGAGGCATGGAGCTGACCATCACACTGTCTCAGATGTTTTTGAGAAGGCGCTGAATGCAGGTTTCATTCAGGCGACAGATTATGTGGAAATTTGGCAGGCACACCTTGACTACCTGAGGAGACGTGTGGATTTCagcaaagaaTCAAGTAAAGAGTTGGAGGAGCTACGAGGAGCTTTCTCTCGGTCTTTGGACTACATGAAACAAGATGTGGAAGAAAGATTTGGTGAAAGTGGAGATCCTTCTTGTATCATAATGCAGATCTGGGCAAGGATAGAGGCCCTACACTGCAAGAACATCCAAAAAGCCAGAGAACTGTGGGACAGTATCATGACGAAAGGGAACGCTAAATATGCCAACATGTGGCTGGAGTACTATAACCTCGAAAGGTCTTACGGAGACCCTGTTCACTGTCGGAAAGCTCTCCACAGAGCAGTTCAGTGCACCTCCGACTACCCTGAGCATGTGAGTGAAGTCCTGCTCACATTCGAGAGGGTGGAAGGTTCTCTGGAGGACTGGGACGTGGCAGTGCAGAAGACGGAGACCCGGCTGAACAGGATTAATGAGCAACGAGCAAAGGTGGCTGAGAAAGAAGCCAACCTCGCTCGCCAAGAGGAAGAGAAAGCCGATCAGCGGCGGAGGACCAAGGTAGACAAGAAGGCTCAGAGGAAGGTCCAGAAGGGATCTCGAGTTGGGGAGAAGAGGAAAGCAGAGCAGGATGATTATCAAGATGAGTGGAATGATAACTCTGAACAAGTGCCTAAAAAGCACAGAGGAAATGGGGACCAAACCACAGAAGAGTACATGGAGACCGAGACAGGACTCTTTGGGAGGAACGCTCGCCCTGGCTATAAGCCGCCTCCACCCGGCAATAAAAGAGCCCAGCAGGGAGCTGCAGCCGGCGAACAGCAGAGCGATGACAAGCAAGAGCTTCGCAACGATAACAGCAGCGTATTCATCAGCAACCTGGCATACACCCTGAAGGAGCCAGAGGCAAAGCTCAGGACCCAGTTTGAGACCTGTGGTCCCATCAAACAGGTTCGCCCCGTCTTCGGCAACAAAGGGACCTTCAAAGGCTACGGCTATGTACAGTTTGAATCCCCAGTGTCTGTCCCTGAAGCTCTAAAGCTGGACCGCCGGGAGGTGGAGGGCAGGCCCATGTTTGTGTCACCTTGTGtcgacaaaaacaaaaatcctgACTTTAAGGTGTTTAAATACAACACAACCATAGAGAAACAAAAAATCTTCATCTCTGGGCTGCCGTTCACGTGCGCTAAAGAGCAACTGGAGGAAATCTGCAAAAGTCATGGCACCATCAAAGATATTCGTCTGGTCACGTATCGCTCAGGAAAACCCAAGGGTCTGGCATATGTTGAGTTTGCAGATGAAGCCCAGGCATCTCAGGCAGTTCTGAAAATGGACGGCATGAATGTAGGGGACaacaaaatctgtgttgctatAAGTAACCCTCCTCGCAGAAATATGATGGATAAACCTGGTTCCAACAGGCCCACAGACATGATGCCTCGCCAGGTCTTTGGATCgagAGGCAGAGGACGCACCCAGCTCTCATTACTCCCTCGTTCCCTGCACCGACAAAGTGGGCCTGGAAGCAAAGTCGAGAACGGGACCGCGGCTGAGCAGGTGCCAGCAACTGCTAGCGCAGTAGTGAATGCAGCCGGGGAGACGAAACCTTTGTCAAATTCAGACTTTGCCAGGATGCTTCTCAGCAAGTGAGAAGACGGAGAGAGAATTACGGCCGTCTTCACACTGAAAGCCGTCTTGTGTCCTTAAAAATCAGTGTTAGTGATTTTTCTGTAATTAGTTACCCGCCTTCCCTTTAATCTCAGTCCTGTTCTCATCATCCGTTGTGCGAAATTTGCCTTAATCGCTGAGCTCCTGCTCTCCGTGGGAAAGCCTTTTTGCTCAAGACTTTTCACCAGTGtgacagtttttgttttgtttgttgaagGTGGTTGGCCGGCTATTTTATAAAGAAAAGTGTATCAtatttgtgtgtaaatatactgtatctaaaatTGTACACCTCATGTTGCGAAGTGTCTTCTTTTGTTGTATAATGTGAAAGGAATCTGAGAGAATCATATAGGAGTGTATTTTTTCTCTCAAAACAGCCAAACTTGTGAATGTTGTTTAAAAAGGTTATATGCAAAAGTTCAGATGTGGTGTAATAtagattgtttgtgtgtgtgcgtgtgtgtgtttgtacagaaGTTGGATGTGCTACAGTGATTAAAAGACATTCTCCAGATATTTTTAGGATAGCTAGGATTTTTGTTGTGTAAATAATTTTAACCTCTGAGGACAAAGTTAACAAGGCTAGCAATGTCCTTTTTTCTGACTGTATAGtaaattaattcattatttTGACATAAAACCATCTGCTACTAATCATAAATATCATGATGCTATAGAGTGTCCATTAAGTTAGTATTAGTTAATTGGCTTTATCCTGGCATGAGGGCATGTTCTTACAGTATGAAATCATGTCCCACTGCTTACGTTTGATATCACTTCTAGTATTTACTGAACTGCTCCAAGTATACTTTCTCATGATTTCTCTGTTTTCAAACATCACTGTTAATGTGACCGGTCTGTTCATGGTAAAACCATCCATCATCAAATCACTTATATTGTTTTAGATATCGGTCTGATTTATGTGCTATGGGCTGAAAGGGAGAACCATATTCCCTTGACCTGGTGTAACTCAAGGAGTGCACATGTAAGCAGGGTGTTAATGATGCTGAAGAAATCTTTGGCTGCTTCGGTGGCTGCATGCCCAACAGTCGAGCTCGCAATGATTTGTTAATCGACAAAAttaattggcaactattttgataattatttAAGTCAAATTTATATTTCTGGTCTCAGATGTGAGGATTATTTGTGGATGTATATGTATTTGGGGTTTAGACTATTGACAGGACAAAATACATTTGATGACATCACCTTAGACTCCTGGAATTTGCGATGAgcatttttcagtttactcaAGTTTTGTTGACCGAGCAATTAAGAAAATAATCACCAGATTTATCCATAATAGAAGTAACCGTTACTTGCAGCCCTGCAGAAGTCCATTGATGTAATGTGTTGAATGAAAGAGTTAAAATATAACTATTAATGCTAGAAAGTACAGGTGGAACTCTGTTGTGTGTACACTGTAAAAGTGAATCCTTAGAATGTTATAAACTGAAACCTAAgtacagttttataaatgtggTTTGGACCTGGTTTTCTTTGTAATCGGTAGAGTTGATCTTATCCTCTGAATGATCTTGGTATGAGATGAGCCACACATGGCTGACAGCTCTTAAGCATTCTGGGTAAAGAGTCTATTGATGTCATATACACATACTGTGTATAAATTAAGAGAATCTATGCGGTTTTTCCATATCTATTTATTACGGCCATCGACTCTTCTTGTTTGGATATTAACAATTCTGTTTGTGTACATAATGTTAAGTATGCTAATTCAAAAAGGTCACCATAGTTTGTAATTAATATAAATCTAAGTTTTTGAAACTGATGGAATACAAGCTATATGTATTGCTCTCACCACTGTGGcctaatctaaaaaaaaaaaaatctaaatatgttGGTCTCTAGAGTCACCTTCCTTTTTATGTCCAGTACTAAAGGTGGTATGTGTGCATTGCTGTTGTTTTGCATAATTTCTATAGTCAATGTTTTGAATTTGATATAGAGGTAAATAATAAATGGAGTTTTCTTGTGTTCTATCACAGTATTTATCTACCTGATTGTTTCATTATCTACCACTTTACCCTGTGTTTTTGGgtcctgtaaaaaaaagaaaaaagtcatgtatttttttctggCCTAAAACTTGTTTTAATAAAGTCATGTAAATCATC

Function

symbol description
sart3 Predicted to enable U6 snRNA binding activity and histone binding activity. Involved in spliceosomal snRNP assembly. Acts upstream of or within exocrine pancreas development; hematopoietic or lymphoid organ development; and spliceosomal complex assembly. Predicted to be located in Cajal body. Predicted to be part of ASAP complex. Predicted to be active in cytoplasm and nucleoplasm. Orthologous to human SART3 (spliceosome associated factor 3, U4/U6 recycling protein).

NR:

description
PREDICTED: squamous cell carcinoma antigen recognized by T-cells 3

GO:

id name namespace
GO:0030098 lymphocyte differentiation biological_process
GO:0031017 exocrine pancreas development biological_process
GO:0048538 thymus development biological_process
GO:0000245 spliceosomal complex assembly biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K22611 SART3, TIP110; squamous cell carcinoma antigen recognized by T-cells 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039803828.1 True 5048 mRNA 0.44 19 19087797 19099604

Neighbor

gene id symbol gene type direction distance location
LOC120560931 coro1c,LOC102291280,LOC106937262,LOC107393983,LOC107091240,LOC102218412 coding upstream 13455 19029407 ~ 19074342 (+)
ssh1a ssh1 coding upstream 64916 19002296 ~ 19022881 (+)
svopa svop coding upstream 94818 18985376 ~ 18992979 (+)
alkbh2 alkbh2 coding upstream 114483 18970284 ~ 18973314 (+)
LOC120560963 NA coding upstream 124989 18961837 ~ 18962808 (+)
cmklr1 NA coding downstream 20541 19120145 ~ 19122475 (+)
limk2 limk2 coding downstream 108175 19207779 ~ 19226925 (+)
tctn2 tctn2 coding downstream 151572 19251176 ~ 19255928 (+)
atp6v0a2b atp6v0a2 coding downstream 157182 19256786 ~ 19269028 (+)
dnah10 dnah10 coding downstream 169932 19269536 ~ 19296674 (+)
G62836 NA non-coding upstream 935 19084934 ~ 19086862 (+)
G62796 NA non-coding upstream 105174 18966083 ~ 18982623 (+)
G62755 NA non-coding upstream 222990 18864575 ~ 18864807 (+)
G62741 NA non-coding upstream 314689 18772755 ~ 18773108 (+)
G62732 NA non-coding upstream 339301 18747490 ~ 18748496 (+)
LOC120560789 NA non-coding downstream 51929 19151533 ~ 19153584 (+)
G63005 LOC104920315,LOC103374896,LOC100704901 non-coding downstream 449806 19549410 ~ 19554906 (+)
G63007 NA non-coding downstream 455779 19555383 ~ 19562350 (+)
G63015 LOC107394186,LOC104941583 non-coding downstream 475957 19575561 ~ 19633642 (+)
G63016 NA non-coding downstream 482368 19581972 ~ 19584473 (+)
tmem119a LOC103353570,LOC104946818 other upstream 6143 19076561 ~ 19081654 (+)
mvk mvk,LOC102798305 other upstream 345398 18737518 ~ 18742399 (+)
acacb acacb other upstream 402334 18661157 ~ 18685463 (+)
tpcn1 tpcn1 other upstream 613066 18441347 ~ 18474731 (+)
tbx5b tbx5,LOC103470367 other upstream 668207 18407348 ~ 18419590 (+)
rasl10a rasl10a other downstream 330797 19430401 ~ 19448950 (+)
c6h2orf68 c21h2orf68,c9h2orf68,LOC104941594,LOC103363183,LOC104920309 other downstream 659992 19759596 ~ 19763524 (+)
vps13a vps13a other downstream 1301343 20400947 ~ 20442093 (+)
wdr31 wdr31,LOC102796061 other downstream 1374047 20473651 ~ 20490586 (+)
G63480 rbm19 other downstream 1576813 20676417 ~ 20677916 (+)

Expression


Co-expression Network