gatc (gatc)


Basic Information

Item Value
gene id gatc
gene name gatc
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18953824 ~ 18961484 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039803882.1
GCTTCACGTTCCCTTCGTCCTACTTCCCCCCTGGGCTAACTACGGAAAGTCGTTCGGTTCGCTATATGCATGCTAGTTAGCACTGACCATGCTGgtgaattattattaaatactaAGTAAATGTGACACCATTTTTATACAATACGGGGATAGCTGAATACCTAATTGTcttaaaatgtcagtgtttaGTCTCGCTGCTAAACGCACATGCCGTGGCGTGTCGTGCCTGAAAATCACTCGATACTGCCTAACAAACGTGGAGAACTtccacagaagaagaaacagcTGCCTGGAGAGCCACATCACAAATGTAACGCGTCTGTTTAGCTCTCATCCACATAACTCCAAGGTACCAGAGGTTGCAACATGGGAACCAGTaccagaggaccaacttccccCGCCTGCCCATATTCCTACTGACCTGGTGGACAAACTGGAGCGACTGGCCTTGGTTGATTTCCGCACCAAACAGGGACTGTTCTGTTTGGAGAAAGCTATACGATTTGCAGATCAGCTTCATGTTGTTGACACGTCAGGTGTTGAACCAATGGATTCAGTTCTGGAGGACAGggcattAAACCTGAGAGACGATGCAGTGATGGAAGGGGACTGTGCTGAAGAATTGCTTCAGCTCTCCAAAAACACAGCTGAAGAATATTTTGTGGCACCACCAGGAAACATTCCGCTAccaaagagggaggagagggcaGCCTTGCTGAAACATTCAGAGTTGTGATATTTATTGCTATTTTTTCATTTGTGTAAAATTAAAAACCTGCTGGTCATGCATTtaga
>XM_039803883.1
CGCTTCACGTTCCCTTCGTCCTACTTCCCCCCTGGGCTAACTACGGAAAGTCGTTCGGTTCGCTATATGCATGCTAGTTAGCACTGACCATGCTGgtgaattattattaaatactaAGTAAATGTGACACCATTTTTATACAATACGGGGATAGCTGAATACCTAATTGTcttaaaatgtcagtgtttaGTCTCGCTGCTAAACGCACATGCCGTGGCGTGTCGTGCCTGAAAATCACTCGATACTGCCTAACAAACGTGGAGAACTtccacagaagaagaaacagcTGCCTGGAGAGCCACATCACAAATGTAACGCGTCTGTTTAGCTCTCATCCACATAACTCCAAGGTACCAGAGGTTGCAACATGGGAACCAGTaccagaggaccaacttccccCGCCTGCCCATATTCCTACTGACCTGGTGGACAAACTGGAGCGACTGGCCTTGGTTGATTTCCGCACCAAACAGGGACTGTTCTGTTTGGAGAAAGCTATACGATTTGCAGATCAGCTTCATGTTGTTGACACGTCAGGTGTTGAACCAATGGATTCAGTTCTGGAGGACAGggcattAAACCTGAGAGACGATGCAGTGATGGAAGGGGACTGTGCTGAAGAATTGCTTCAGCTCTCCAAAAACACAGCTGAAGAATATTTTGTGGCACCACCAGGAAACATTCCGCTAccaaagagggaggagagggccGCCTTGCTGAAACATTCAGAGTTGTGATATTTATTGCTATTTTTTCATTTGTGTAAAATTAAAAACCTGCTGGTCATGCATTtagattttgttgtttttcagtttCCTTTGACACCTGCAGTATGGTTGAATCTTGTTAGTTTCAgtatcattttattaaaattgtgAGAGAGCAGTGTGTTGACGTTGGCAACCTGTGTTAGAAGGGCAGTGCAATGGCtgtccattgttttgatttgtGATTTACATTATGACCATGGGGTCAGCTGAGAAAAAATGTGTAAATCTATAAACTGTGCACATGGCTTGTGAATCTGAGGGGGGGTGGGCATGAAATGTATGTATCCTGTTTTCATTCTAGTGTTGTTAAACTTTAATAATAcaaattttaatattt

Function

symbol description
gatc Predicted to enable ATP binding activity and carbon-nitrogen ligase activity, with glutamine as amido-N-donor. Predicted to act upstream of or within regulation of translational fidelity and translation. Predicted to be located in mitochondrion. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 42. Orthologous to human GATC (glutamyl-tRNA amidotransferase subunit C).

NR:

description
glutamyl-tRNA(Gln) amidotransferase subunit C, mitochondrial

GO: NA

KEGG:

id description
K02435 gatC, GATC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039803882.1 False 795 mRNA 0.46 5 18953825 18957341
XM_039803883.1 True 1107 mRNA 0.43 5 18953824 18961484

Neighbor

gene id symbol gene type direction distance location
sgsm1a sgsm1 coding upstream 1682 18924315 ~ 18952142 (+)
ankrd13a ankrd13a coding upstream 49051 18896623 ~ 18904773 (+)
LOC120560157 tchp,LOC102799482 coding upstream 75734 18872282 ~ 18878090 (+)
fam222a fam222a coding upstream 112622 18794250 ~ 18841202 (+)
aldh3b2 LOC103470338,LOC103357480,LOC106944551,LOC103142889,LOC106918406,LOC107097252,LOC101157544,LOC100709454,LOC102306236,LOC104945033,LOC105926931,LOC108234466 coding upstream 217349 18730216 ~ 18736475 (+)
LOC120560963 NA coding downstream 353 18961837 ~ 18962808 (+)
alkbh2 alkbh2 coding downstream 8800 18970284 ~ 18973314 (+)
svopa svop coding downstream 23892 18985376 ~ 18992979 (+)
ssh1a ssh1 coding downstream 40812 19002296 ~ 19022881 (+)
LOC120560931 coro1c,LOC102291280,LOC106937262,LOC107393983,LOC107091240,LOC102218412 coding downstream 67923 19029407 ~ 19074342 (+)
G62755 NA non-coding upstream 89017 18864575 ~ 18864807 (+)
G62741 NA non-coding upstream 180716 18772755 ~ 18773108 (+)
G62732 NA non-coding upstream 205328 18747490 ~ 18748496 (+)
G62667 NA non-coding upstream 316603 18636726 ~ 18637221 (+)
G62656 lztr1 non-coding upstream 336255 18617074 ~ 18617569 (+)
G62796 NA non-coding downstream 4599 18966083 ~ 18982623 (+)
G62836 NA non-coding downstream 123450 19084934 ~ 19086862 (+)
LOC120560789 NA non-coding downstream 190049 19151533 ~ 19153584 (+)
G63005 LOC104920315,LOC103374896,LOC100704901 non-coding downstream 587926 19549410 ~ 19554906 (+)
G63007 NA non-coding downstream 593899 19555383 ~ 19562350 (+)
mvk mvk,LOC102798305 other upstream 211425 18737518 ~ 18742399 (+)
acacb acacb other upstream 268361 18661157 ~ 18685463 (+)
tpcn1 tpcn1 other upstream 479093 18441347 ~ 18474731 (+)
tbx5b tbx5,LOC103470367 other upstream 534234 18407348 ~ 18419590 (+)
G62513 NA other upstream 622594 18330705 ~ 18331230 (+)
tmem119a LOC103353570,LOC104946818 other downstream 115077 19076561 ~ 19081654 (+)
rasl10a rasl10a other downstream 468917 19430401 ~ 19448950 (+)
c6h2orf68 c21h2orf68,c9h2orf68,LOC104941594,LOC103363183,LOC104920309 other downstream 798112 19759596 ~ 19763524 (+)
vps13a vps13a other downstream 1439463 20400947 ~ 20442093 (+)
wdr31 wdr31,LOC102796061 other downstream 1512167 20473651 ~ 20490586 (+)

Expression


Co-expression Network