LOC120560963


Basic Information

Item Value
gene id LOC120560963
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18961837 ~ 18962808 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039803885.1
GTCGTAAAGGGAGGTGTGGATCAGCTGAGGCAGACTGTATATAAACAGTGGTAGCTGAAGCCTCTGACAGCTGATCCTGAGCATAGTTGTTGTTCTGTCACCGTCTGAAGACCTCAAGTTCTCCGGAGGAATTTGCTAAAGTAAAGATCACAAGGCCACTTTGATCATGGACATAACCATCTGCATGCTGAACGGGACTTCCCGCACCCTGAGGGTGCACCCTGAGGACACAGTGGGGTCTCTGAAAATTCTCATCCAGGACAAACTAGGATTTCCCTCTGCAACGCAGAGGCTGGTGTTTGTGAACGGCATGAACACCGATCTCAGCGACGACTCGAGGCCCCTGAGCTCCTACGGCTTACGATCTGGCGCCAGGGTGTCCCTGCTGGTGACCCAGCCGGCGACCGTCCAGGTGTTCCTCAGAAACGAGAAGGGGAAGTTGAGCACATATGACATCCAACGCGACGAGACTGTGAGCCACTTCAGGAGCAGGGTCGAGAGCAGAGAGGGGATTCCGGTGAGCCAGCAGAGGCTCATTCACCAAGGCAGAGAGATGAACGAGGGCAGACTTTCCGAATACAATGTTGAAGCGCTGAGCACCATCGACCTGGGTCTCCGTCTAAGAGGAGGCTGAGGACACTTTCATATAGTTCATATTCTGTACATTCCTTTATTTAATCTAAATCAAGATCTGACAGCCTCAAATGCCATATTTcgtatttatttgtattttcatttggAAAAAAGCAATGCATTCCAAGAGTAATTCTGCCATATCTAAAAAATGATCATaacgttcacacacacacacaacacagtatgTTAGAATTGtattttgacatgttttaatatattaactggacactgtttaaaaaaaaa

Function

GO: NA

KEGG:

id description
ko04141 Protein processing in endoplasmic reticulum

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039803885.1 True 879 mRNA 0.47 2 18961837 18962808

Neighbor

gene id symbol gene type direction distance location
gatc gatc coding upstream 353 18953824 ~ 18961484 (+)
LOC120560962 NA coding upstream 2859 18958006 ~ 18958978 (+)
sgsm1a sgsm1 coding upstream 9695 18924315 ~ 18952142 (+)
ankrd13a ankrd13a coding upstream 57064 18896623 ~ 18904773 (+)
LOC120560157 tchp,LOC102799482 coding upstream 83747 18872282 ~ 18878090 (+)
alkbh2 alkbh2 coding downstream 7476 18970284 ~ 18973314 (+)
svopa svop coding downstream 22568 18985376 ~ 18992979 (+)
ssh1a ssh1 coding downstream 39488 19002296 ~ 19022881 (+)
LOC120560931 coro1c,LOC102291280,LOC106937262,LOC107393983,LOC107091240,LOC102218412 coding downstream 66599 19029407 ~ 19074342 (+)
sart3 sart3,LOC102781133 coding downstream 124989 19087797 ~ 19099604 (+)
G62755 NA non-coding upstream 97030 18864575 ~ 18864807 (+)
G62741 NA non-coding upstream 188729 18772755 ~ 18773108 (+)
G62732 NA non-coding upstream 213341 18747490 ~ 18748496 (+)
G62667 NA non-coding upstream 324616 18636726 ~ 18637221 (+)
G62656 lztr1 non-coding upstream 344268 18617074 ~ 18617569 (+)
G62796 NA non-coding downstream 3275 18966083 ~ 18982623 (+)
G62836 NA non-coding downstream 122126 19084934 ~ 19086862 (+)
LOC120560789 NA non-coding downstream 188725 19151533 ~ 19153584 (+)
G63005 LOC104920315,LOC103374896,LOC100704901 non-coding downstream 586602 19549410 ~ 19554906 (+)
G63007 NA non-coding downstream 592575 19555383 ~ 19562350 (+)
mvk mvk,LOC102798305 other upstream 219438 18737518 ~ 18742399 (+)
acacb acacb other upstream 276374 18661157 ~ 18685463 (+)
tpcn1 tpcn1 other upstream 487106 18441347 ~ 18474731 (+)
tbx5b tbx5,LOC103470367 other upstream 542247 18407348 ~ 18419590 (+)
G62513 NA other upstream 630607 18330705 ~ 18331230 (+)
tmem119a LOC103353570,LOC104946818 other downstream 113753 19076561 ~ 19081654 (+)
rasl10a rasl10a other downstream 467593 19430401 ~ 19448950 (+)
c6h2orf68 c21h2orf68,c9h2orf68,LOC104941594,LOC103363183,LOC104920309 other downstream 796788 19759596 ~ 19763524 (+)
vps13a vps13a other downstream 1438139 20400947 ~ 20442093 (+)
wdr31 wdr31,LOC102796061 other downstream 1510843 20473651 ~ 20490586 (+)

Expression


Co-expression Network