LOC120560984


Basic Information

Item Value
gene id LOC120560984
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 20001950 ~ 20003895 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039803917.1
TCACTTTGTTGATGGTGGCTATTTCCTGAATCGCTGCATGAATATCTATTAATCATCACCAAACACCACACAACAGGAAACAAACACTGCTATCATGTTAAGCTTCCTTCCTCATTATTTCTAAAGCATTCTCAAAATAAGGCATTAGATTCAAATCTTGTGTTAAAACTGTTACTCTtgttatttgtgtttattgCAACGGATGCATTACCATACTTTAAATTGTACAACAATTCACTTGATacatattgaaaaaaaactgtatacaTCACTCACCACCCCCAGAGCATTCTGCTAATCTCCGAATGTACAAAACCATCACACTTCACACCACCCCCACCCGAAATATAAATTTTAAACTCCATATACACTACATGAATGTATATCTTTGCCAACATCCACACCTGCACACAAACATATCCAAATACAAacagacatgcatgcatgtgtgcaccAAAAGGGATCTTAtacaaatatttcaaaataattatatagCAAAATGTGGCAGTGAAAGGGCTAAAAGTCAGAACAGATAATGCTTTTCAGTTCCTAAATTTAAAGAGCCAAGAGTTTTTCAGGGACATTTAATAATGGTTATAATTGAAACGAGAACAGTTAAACATGCAGTAAATGGATTTCAATTGAAGTTAATGCAATAAGATAAAGGACTCATTAATGATTTTTATACAAGCCTCAAGGGCAAAATGTTTAAAGGGTTTCTACATGCAAGGCATTGTAAACTGATAATGTTCAATAATACTGGCCCCTCTGATGCAAATAGTCAACCCTTCTTTAAAATAACTTTGCGTGTTAACATTTAATGAAAAGCAGAACCACCGGGCTTCCTAGAAATGCAAAAACCcacatcacattttttttcGTAAAGAGGTTTCCCTTTAAAGAATGCAGACAGTCCTCAATGTGTTATTCCTCTGATCTGTAGTCAGCGAGGCAACACTAAACTCAACATGAAATGCAATTTCACTGGAACTCTGCTGATCAGTGTGCTCCCTCCACTGTTGGTGACAGAATTTGTTTTGGGAGTCCTTGGAAATGGTTTGGCTCTCTGGATCTTCTGCTTCCACCTGAAGCCCTGGAAGAGCAGCACGGTGTTACTCTTTAACCTGGCAATGGCTGACTTCTTTCTCATCATGGTTTTGCCTTTCCGTGCCAGCTACTACATCTCTGAGATCAAGTGGAGGTTTGGAGACGCTCTCTGCAACACCTGCCTCTTCATGTTGGCAATGAACCGCAGTGGAAGTACCCTCTTCTTGATGGCTATCGCTGTGGATAGGTACATGCGTGTGGTGCATCCCCATCATCCCATCAACTCTCTGAGTATCTCCAAAGCCATGTGTGGAGCACTTGCACTATGGTTGCTCACCATCTCAATTTCAGCTCATGTCTTCACtctgcaacacaacaacacaacctACTGTGAGAGCTTCATGATTGAGACTGAAGCCCACAGTAATCTGAGCTGGCATAAATTTACGTTCCTCTTTTCCTTCTATATGCCTCTGCTTGTGATTCTCTACTGCACATTCCAAATTATTGGCCACCTGAGAAGGAGACAGTTGGCCCAGCATGCAAAGATTAAGAAGGCTCTGTGCTTCATCACAGTAGTGGCGGTGCTCTTCATCATTTGCTTCCTCCCGAGCAACATCACACAACTGCTGATTTGGATCAAGTTCCAACAAGTACCCAGCAGCACCCTCTCTGATCCTGAAGTCTGCCTTGCTCTGGAAGACCTGACCACCGTGTTTTACATCACCATTAGCCTGACCTATCTCAACAGCGTGCTGGACCCTGTGGTTTACTACTTCTCCAGCCCTGTCTTCAAGAACATCTGCAGGAAAGCTCTTCATCTGTCCCAAGCAGACACTGCTGAAAGTGCAGAGAAGAAAACTCGAGAAACAGGCTCCCAGTCGCTCAGCCAGCTGTGA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K08402 HCAR2_3, GPR109; hydroxycarboxylic acid receptor 2/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039803917.1 True 1946 mRNA 0.42 1 20001950 20003895

Neighbor

gene id symbol gene type direction distance location
LOC120560983 NA coding upstream 16982 19983835 ~ 19984968 (+)
kmt5ab LOC102787754 coding upstream 53481 19943828 ~ 19948469 (+)
mtrfr clg12h12orf65,LOC102787453,LOC102198566,LOC102302482,LOC104962307 coding upstream 59101 19941473 ~ 19942849 (+)
arl6ip4 arl6ip4,LOC102787162 coding upstream 110291 19889250 ~ 19891659 (+)
mthfd2 mthfd2,LOC103363193 coding upstream 114480 19883210 ~ 19887470 (+)
LOC120560988 kntc1 coding downstream 27980 20031875 ~ 20034097 (+)
rsrc2 rsrc2 coding downstream 63562 20067457 ~ 20074264 (+)
zcchc8 zcchc8 coding downstream 72987 20076882 ~ 20082990 (+)
clip1a clip1,LOC102789884 coding downstream 80018 20083913 ~ 20109984 (+)
LOC120561472 LOC104952314,LOC103366651 coding downstream 158102 20161997 ~ 20168159 (+)
G63128 NA non-coding upstream 126806 19873101 ~ 19875144 (+)
G63087 NA non-coding upstream 169623 19780965 ~ 19832327 (+)
G63076 LOC103376870 non-coding upstream 254481 19746949 ~ 19747469 (+)
G63068 LOC103148513,LOC106959092,LOC106925485,LOC102232144 non-coding upstream 284475 19716498 ~ 19717475 (+)
G63029 NA non-coding upstream 345454 19656232 ~ 19656496 (+)
G63189 NA non-coding downstream 11109 20015004 ~ 20015249 (+)
G63190 NA non-coding downstream 12337 20016232 ~ 20016661 (+)
G63192 NA non-coding downstream 14222 20018117 ~ 20018412 (+)
G63202 NA non-coding downstream 21018 20024913 ~ 20025748 (+)
G63203 NA non-coding downstream 21860 20025755 ~ 20026755 (+)
c6h2orf68 c21h2orf68,c9h2orf68,LOC104941594,LOC103363183,LOC104920309 other upstream 238426 19759596 ~ 19763524 (+)
rasl10a rasl10a other upstream 553000 19430401 ~ 19448950 (+)
tmem119a LOC103353570,LOC104946818 other upstream 920296 19076561 ~ 19081654 (+)
mvk mvk,LOC102798305 other upstream 1259551 18737518 ~ 18742399 (+)
acacb acacb other upstream 1316487 18661157 ~ 18685463 (+)
vps13a vps13a other downstream 397052 20400947 ~ 20442093 (+)
wdr31 wdr31,LOC102796061 other downstream 469756 20473651 ~ 20490586 (+)
G63480 rbm19 other downstream 672522 20676417 ~ 20677916 (+)
LOC120560787 NA other downstream 1584981 21588876 ~ 21599289 (+)
G63905 NA other downstream 2926004 22929899 ~ 22930205 (+)

Expression


Co-expression Network