LOC120560988 (kntc1)


Basic Information

Item Value
gene id LOC120560988
gene name kntc1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 20031875 ~ 20034097 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039803918.1
AGGATCTGTAACATGATGTTGGAAAAATGGATCTGTAAAACATGCCCTGCTGTCACCAAGGATATTGGTAATCATGAGTGTATCAGCAACATTGAGGAGGACCCAGACTTAATGAGGGTGGTGTACATGCTGCAGTCTTGCCCCATGGATGATGCTGCCCGTCTCCTAAACCCTATCCTATCTGCTGAAACCTGGCCGCTCAGCACTTCTGGGCCTCGTCTGACCTTCTGCCATCGGACTCGAGCGCTGCTTTGTCTCGTCCGCCTCGCTGATTCGGCCACTCTGGCTGAGTTGCAGATCCCCAGGAACAAAATTCAATATTATCTGAAATGCTACATCTTTGTCTCTCAACTGGAGGCATTAAACATCCCTTACACGGTGCAGTCTTTCCTCAGTAGTCCCAAAGAGGGCTTGGTTAAAGGGTTGTGGAAGAATCACAGTCATGAGCCGCAGGCGGTGCGGTTGGTGGCTGACCTGTGCTTGGAGTATCAGGTGTACGACCCTCAGCTGTGGAACAGTCTGCTTCAGAAGCTGCTGGGCTTCAACTTGATCAGCCACCTCCAGAAGGTGCTAGAGGCAGTAGTGGCTGTGCCTGCTCTGTGGGAGATTTCCAGTTTCTCCAGGACCTGGAGGAGTATGATACTGGCACCTTTTGTCTCAGCTTCTGTTCCTCTGAGTCCTGATCAACAGGCAACACTCTACAGGACCTTTGTTCTCCTCCTCAAGTACGCTTTACTCATGTTCCAACCATTTACAGCCAACTGTCCTGCTTGCTAGGACTATGTAACTTTCATGGACTGCTAGTACTAGAATatgaacatttaaaacatgcatgaTAGATGAaa

Function

symbol description
kntc1 Orthologous to human KNTC1 (kinetochore associated 1).

NR:

description
PREDICTED: kinetochore-associated protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039803918.1 True 845 mRNA 0.49 9 20031875 20034097

Neighbor

gene id symbol gene type direction distance location
LOC120560984 NA coding upstream 27980 20001950 ~ 20003895 (+)
LOC120560983 NA coding upstream 46907 19983835 ~ 19984968 (+)
kmt5ab LOC102787754 coding upstream 83406 19943828 ~ 19948469 (+)
mtrfr clg12h12orf65,LOC102787453,LOC102198566,LOC102302482,LOC104962307 coding upstream 89026 19941473 ~ 19942849 (+)
arl6ip4 arl6ip4,LOC102787162 coding upstream 140216 19889250 ~ 19891659 (+)
rsrc2 rsrc2 coding downstream 33360 20067457 ~ 20074264 (+)
zcchc8 zcchc8 coding downstream 42785 20076882 ~ 20082990 (+)
clip1a clip1,LOC102789884 coding downstream 49816 20083913 ~ 20109984 (+)
LOC120561472 LOC104952314,LOC103366651 coding downstream 127900 20161997 ~ 20168159 (+)
psmd9 psmd9 coding downstream 134623 20168720 ~ 20172092 (+)
G63204 NA non-coding upstream 4709 20026910 ~ 20027166 (+)
G63203 NA non-coding upstream 5120 20025755 ~ 20026755 (+)
G63202 NA non-coding upstream 6127 20024913 ~ 20025748 (+)
G63192 NA non-coding upstream 13463 20018117 ~ 20018412 (+)
G63190 NA non-coding upstream 15214 20016232 ~ 20016661 (+)
G63385 NA non-coding downstream 358310 20392407 ~ 20392631 (+)
G63377 NA non-coding downstream 408057 20442154 ~ 20442952 (+)
LOC120560275 NA non-coding downstream 524243 20558340 ~ 20564445 (+)
G63451 NA non-coding downstream 531571 20565668 ~ 20566142 (+)
G63457 NA non-coding downstream 601492 20635589 ~ 20637358 (+)
c6h2orf68 c21h2orf68,c9h2orf68,LOC104941594,LOC103363183,LOC104920309 other upstream 268351 19759596 ~ 19763524 (+)
rasl10a rasl10a other upstream 582925 19430401 ~ 19448950 (+)
tmem119a LOC103353570,LOC104946818 other upstream 950221 19076561 ~ 19081654 (+)
mvk mvk,LOC102798305 other upstream 1289476 18737518 ~ 18742399 (+)
acacb acacb other upstream 1346412 18661157 ~ 18685463 (+)
vps13a vps13a other downstream 366850 20400947 ~ 20442093 (+)
wdr31 wdr31,LOC102796061 other downstream 439554 20473651 ~ 20490586 (+)
G63480 rbm19 other downstream 642320 20676417 ~ 20677916 (+)
LOC120560787 NA other downstream 1554779 21588876 ~ 21599289 (+)
G63905 NA other downstream 2895802 22929899 ~ 22930205 (+)

Expression


Co-expression Network