mthfd2l (mthfd2l,LOC102288655,LOC100709995)


Basic Information

Item Value
gene id mthfd2l
gene name mthfd2l,LOC102288655,LOC100709995
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 27394417 ~ 27417204 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039803935.1
CGTACACACGCTCtacgacacacacaaacatggcgGCCTCTATTGCACCGCTACGCTCCTCCTTCAGGATTTGTAGCCCGTTTAGGTTACACCATCACTGCTGCCGGGCTAAACTGCGGATGCACAGAAAATGCGAGAATCAAAGGAGACAGCTTCACCAGTCGGTGACGAGGCACACCGCTGTGGTGATTTCGGGAACAGAGTTGGCTCGTCAGCTCCACAGAGAAATCCAGCGTGATGTGGAAGAGCTGGTAGCTCAGGGCAACATGAGACCCCACCTAGGAGTTGTCTTGGTGGGGGACGACCCAGCCAGTCGTACTTATGTTAGGAACAAGACCCGGGCAGCTAGCATCCTGGGTATTTCCAGTGACACAGTGGTGCGGCGTAGCTCGGTCTCCCAGGAGGAGTTGCTGGAGTTGATTGACAAGATGAACCGTGACTGGAGGGTCAGCGGATTGTTGGTGCAGCTGCCACTTCCCGAGCACATCAATGAGCGAGCAGTATGTAATGCCATCGCTCCAGAGAAGGATGTGGACGGCTTCCATATTGTGAATATCGGTAAGCTGTGTCTAGACCAGAGATCCATGGTGCCTGCCACACCTGCAGCTGTCTGGGAGATCATCAAAAGAGCAGGTATTGAGACGGTGGGGAAGAATGTGCTGGTCGCTGGTCGCTCCAAAAATGTTGGAATGCCCATCGCAATGTTGCTGCACACTGATCGCAAGCATGAACGCCCCGGAGGTGATGCCACAGTGACCATTGCCCACAGATGTACACCCAAAGAACAGCTGAAGGAGCTAACCAGCCTGGCTGACATAATCATTGCAGCTGCAGGTGTTCCTGGGCTGATCACAGCAGATATGGTGAAAGAGGGGGCAGCCGTCATCGACGTGGGCATAAACCGCATCCAGGACCCAAACACAGGGAAACTCCGGCTCATCGGGGACGTGGACTTTGAGGGAGTGAAGGAGAAGGCAGGTTTCATCACACCTGTTCCCGGAGGCGTGGGTCCGATGACCGTTGCAATGCTGATGAAGAACACTGTGACCGCTGCCAGAAATGCACTCATGCATTAAACACACTCCTTGaatgatatacagtacaaacagtgtatgcatacacacatatatacatcagTTCATTTAGGTTTACACACACTTTACCAAACATCGAAGatactttcatttaaaaatccATGAGCTCAAGACTCCATACCTGCTGGGAAACTTACTTGATATGATACTTTGTCTATATTTTTtgatttgttcatttatttatttaagttatttatttcagagttcactttttaaaaatttaGATTAATATTTTTTCTACTGAAGTTGTTTTGGTTCTTTTTTTGAACATTCCAGATTCACTGGAAAATGATGATTAAATACAAATCAATGCTGTGCCAGTA
>XM_039803936.1
gtcaCGTGTCAGAGGATGGTGATTGACAGCAGGTTTCACCGTTCACGGCACACCGCTGTGGTGATTTCGGGAACAGAGTTGGCTCGTCAGCTCCACAGAGAAATCCAGCGTGATGTGGAAGAGCTGGTAGCTCAGGGCAACATGAGACCCCACCTAGGAGTTGTCTTGGTGGGGGACGACCCAGCCAGTCGTACTTATGTTAGGAACAAGACCCGGGCAGCTAGCATCCTGGGTATTTCCAGTGACACAGTGGTGCGGCGTAGCTCGGTCTCCCAGGAGGAGTTGCTGGAGTTGATTGACAAGATGAACCGTGACTGGAGGGTCAGCGGATTGTTGGTGCAGCTGCCACTTCCCGAGCACATCAATGAGCGAGCAGTATGTAATGCCATCGCTCCAGAGAAGGATGTGGACGGCTTCCATATTGTGAATATCGGTAAGCTGTGTCTAGACCAGAGATCCATGGTGCCTGCCACACCTGCAGCTGTCTGGGAGATCATCAAAAGAGCAGGTATTGAGACGGTGGGGAAGAATGTGCTGGTCGCTGGTCGCTCCAAAAATGTTGGAATGCCCATCGCAATGTTGCTGCACACTGATCGCAAGCATGAACGCCCCGGAGGTGATGCCACAGTGACCATTGCCCACAGATGTACACCCAAAGAACAGCTGAAGGAGCTAACCAGCCTGGCTGACATAATCATTGCAGCTGCAGGTGTTCCTGGGCTGATCACAGCAGATATGGTGAAAGAGGGGGCAGCCGTCATCGACGTGGGCATAAACCGCATCCAGGACCCAAACACAGGGAAACTCCGGCTCATCGGGGACGTGGACTTTGAGGGAGTGAAGGAGAAGGCAGGTTTCATCACACCTGTTCCCGGAGGCGTGGGTCCGATGACCGTTGCAATGCTGATGAAGAACACTGTGACCGCTGCCAGAAATGCACTCATGCATTAAACACACTCCTTGaatgatatacagtacaaacagtgtatgcatacacacatatatacatcagTTCATTTAGGTTTACACACACTTTACCAAACATCGAAGatactttcatttaaaaatccATGAGCTCAAGACTCCATACCTGCTGGGAAACTTACTTGATATGATACTTTGTCTATATTTTTtgatttgttcatttatttatttaagttatttatttcagagttcactttttaaaaatttaGATTAATATTTTTTCTACTGAAGTTGTTTTGGTTCTTTTTTTGAACATTCCAGATTCACTGGAAAATGATGATTAAATACAAATCAATGCTGTGCCAGTA

Function

symbol description
mthfd2l Predicted to enable methenyltetrahydrofolate cyclohydrolase activity; methylenetetrahydrofolate dehydrogenase (NAD+) activity; and methylenetetrahydrofolate dehydrogenase (NADP+) activity. Predicted to be involved in tetrahydrofolate interconversion. Predicted to act upstream of or within one-carbon metabolic process. Predicted to be active in mitochondrion. Is expressed in anterior neural tube and optic cup. Orthologous to human MTHFD2L (methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2 like).

NR:

description
PREDICTED: probable bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase 2

GO:

id name namespace
GO:0009396 folic acid-containing compound biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity molecular_function

KEGG:

id description
K13403 MTHFD2; methylenetetrahydrofolate dehydrogenase(NAD+) / 5,10-methenyltetrahydrofolate cyclohydrolase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039803935.1 True 1417 mRNA 0.48 8 27394417 27417204
XM_039803936.1 False 1292 mRNA 0.48 8 27394697 27417204

Neighbor

gene id symbol gene type direction distance location
LOC120560992 LOC106926053,LOC103469987,LOC103145901,LOC108233650,LOC105928392,LOC106519893 coding upstream 69587 27309200 ~ 27324830 (+)
snx18a snx18 coding upstream 200898 27179360 ~ 27193519 (+)
fsta fst coding upstream 383096 27005139 ~ 27011321 (+)
itga2.2 itga2 coding upstream 391773 26981345 ~ 27002644 (+)
paip1 paip1,LOC104941454 coding upstream 419478 26965484 ~ 26974939 (+)
LOC120560091 NA coding downstream 1505 27418709 ~ 27420717 (+)
LOC120559995 NA coding downstream 5333 27422537 ~ 27428690 (+)
areg NA coding downstream 16791 27433995 ~ 27442196 (+)
gpx8 gpx8,LOC102796953 coding downstream 53052 27470256 ~ 27472819 (+)
tut7 LOC104960608 coding downstream 68498 27485702 ~ 27509635 (+)
G65108 NA non-coding upstream 4555 27389457 ~ 27389862 (+)
G65106 NA non-coding upstream 15202 27378998 ~ 27379215 (+)
G65083 NA non-coding upstream 194227 27199949 ~ 27200190 (+)
LOC120560738 NA non-coding upstream 494859 26897902 ~ 26899558 (+)
G64967 ykt6 non-coding upstream 498274 26893701 ~ 26896143 (+)
G65171 NA non-coding downstream 59544 27476748 ~ 27476966 (+)
G65272 NA non-coding downstream 485871 27903075 ~ 27904933 (+)
G65314 NA non-coding downstream 585335 28002539 ~ 28005121 (+)
G65362 NA non-coding downstream 954252 28371456 ~ 28371841 (+)
G65378 NA non-coding downstream 1045421 28462625 ~ 28463104 (+)
G65084 lipg other upstream 23458 27205234 ~ 27370959 (+)
ndufs4 ndufs4 other upstream 354818 27012210 ~ 27039599 (+)
si:dkey-178e17.1 slc25a1,LOC100697273,LOC101470788,LOC103359526,LOC102784907,LOC107394264,LOC103145904 other upstream 732522 26644661 ~ 26661895 (+)
cltcl1 LOC100691387,LOC103359525 other upstream 750250 26614237 ~ 26644167 (+)
c6h22orf39 clg12h22orf39 other upstream 897430 26494284 ~ 26496987 (+)
mboat4 NA other downstream 1428422 28845626 ~ 28849471 (+)
ubac1 ubac1 other downstream 1927376 29344580 ~ 29351756 (+)
fbxo21 fbxo21 other downstream 2769644 30186848 ~ 30212108 (+)
LOC120560820 NA other downstream 2829683 30246887 ~ 30251519 (+)
G65899 taok3 other downstream 3156882 30574086 ~ 30578159 (+)

Expression


Co-expression Network