ap3m2 (ap3m2,LOC102227009,LOC100708439)


Basic Information

Item Value
gene id ap3m2
gene name ap3m2,LOC102227009,LOC100708439
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 6727779 ~ 6738309 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039803943.1
TCACACCAAGAGCTGCTCCACCTAACGGGAAGCAACGACGGCTGCTTAATCTTTCATTGGGAAAAGGGGTGAAAGGCGAGACGAAACCGTCAAAAACAAATTGTCTTCGCCTCCagccaaaatgatccacagccTGTTCCTAATCAACGCCTCAGGGGACATTTTCCTGGAGAAGCACTGGAAGAGCGTGGTCAGCCGCTCTGTGTGTGACTACTTCTTTGAGGCACAGGAACGCGCCACCGAGCCGGAGAACGTCCCACCAGTTATACCCACACCGCATCACTACCTTATCAGTGTGCTCAGGCATCGCATCTACTTTGTTGCAGTCATCCAGAGCGAGGTGCCACCGCTGTTTGTCATCGAGTTCCTTCACAGAGTCGTTGACACGTTCCAGGACTATTTTGGAGTGTGTACAGAGGCTGCTATTAAGGACAATGTGGTAGTGGTCTATGAACTACTGGAGGAGATGCTGGACAACGGCTTCCCGCTGGCCACAGAGTCCAACATCCTCAAAGAGCTCATTAAGCCTCCCACCATCCTCCGCACGATGGTCAACACCATCACAGGCAGCACCAATGTTGGTGAACAGCTCCCTACAGGCCAGCTGTCAGTGGTGCCATGGCGACGCACCGGAGTCAAATACACCAACAACGAGGCCTATTTTGACGTGGTGGAGGAGATCGATGCTATCATCGATAAATCAGGCTCCACTATTACAGCAGAAATCCAGGGAGTCATTGATGCCTGTGTCAAACTGACAGGCATGCCCGacctcactctctctttcatgAATCCTCGTCTGCTGGATGATGTCAGCTTCCACCCGTGTGTTCGGTTCAAGCGCTGGGAAGCTGAGCGGATCCTCTCCTTCATCCCCCCCGATGGAAACTTCCGGTTGCTCTCCTACCACGTCAGCTCTCAGAACCTGGTGGCCATCCCAGTGTACATCAAGCACAACATCACCTTCCGAGAGGGAAGCTCGCAGGGACGTTTTGACTTGACTCTGGGACCCAAACAGACCATGGGCAAGGCCGTGGAGGCGGTCCTAGTCAGCAGCCAGCTGCCCCGTGGCGTCCTGAATGCCAACCTCAACCCCTCCCAGGGAACATACACCTTTGACCCAGTCACAAAGATGTTGAGCTGGGATGTTGGAAAGATCAACCCACAGAAGCTTCCCAGCCTGAAAGGCACCATGAGCCTGCAGGCCGGGGCCTCCAAACCTGACGAGAACCCCACCATCAACATCCAGTTAAAGATCCAACAGATGGCCAtctcagGGCTGAAGGTGAATCGACTGGACATGTACGGTGAGAAGTATAAACCTTTCAAAGGCATCAAATACATGACGAAGGCTGGCAAGTTCCAGGTGCGGACATAAAGACTACTGCTCTGTGACGACTGGACCAAACCACCACGACACTGATGGGTGCTGtgatgggggaaaaaaggggAGTTGGTA

Function

symbol description
ap3m2 Predicted to be involved in endocytosis. Predicted to act upstream of or within intracellular protein transport. Predicted to be located in Golgi apparatus and cytoplasmic vesicle membrane. Predicted to be part of clathrin adaptor complex. Predicted to be active in cytoplasmic vesicle. Orthologous to human AP3M2 (adaptor related protein complex 3 subunit mu 2).

NR:

description
PREDICTED: AP-3 complex subunit mu-2

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030131 clathrin adaptor complex cellular_component

KEGG:

id description
K12398 AP3M; AP-3 complex subunit mu

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039803943.1 True 1459 mRNA 0.53 9 6727779 6738309

Neighbor

gene id symbol gene type direction distance location
cdca2 NA coding upstream 78801 6631591 ~ 6648978 (+)
sema4c sema4c coding upstream 100687 6498113 ~ 6627092 (+)
gnb1l NA coding upstream 686115 6010518 ~ 6041664 (+)
txnrd2.2 txnrd2 coding upstream 732375 5966810 ~ 5995404 (+)
arvcfb arvcf coding upstream 765707 5668275 ~ 5962072 (+)
tet3 LOC104925995,LOC103369109 coding downstream 13979 6752288 ~ 6796697 (+)
npffr1l2 LOC104924995 coding downstream 91388 6829697 ~ 6854404 (+)
figla figla coding downstream 213627 6951936 ~ 6968096 (+)
snrnp27 snrnp27,LOC102787093 coding downstream 258844 6997153 ~ 7007259 (+)
mxd1 mxd1,LOC106535940,LOC102787379 coding downstream 269855 7008164 ~ 7026887 (+)
G59516 NA non-coding upstream 392988 6334494 ~ 6334791 (+)
G59515 NA non-coding upstream 393565 6333979 ~ 6334214 (+)
G59506 NA non-coding upstream 479421 6248069 ~ 6248358 (+)
G59504 NA non-coding upstream 506923 6220582 ~ 6220856 (+)
G59502 NA non-coding upstream 535501 6192078 ~ 6192278 (+)
G59544 NA non-coding downstream 2355 6740664 ~ 6740928 (+)
G59543 NA non-coding downstream 2732 6741041 ~ 6741289 (+)
G59627 NA non-coding downstream 76939 6815248 ~ 6815506 (+)
G59687 NA non-coding downstream 288989 7027298 ~ 7029309 (+)
G59694 NA non-coding downstream 343705 7082014 ~ 7106854 (+)
kat6a kat6a,LOC102311194,LOC106937639,LOC106932925 other upstream 8895 6674864 ~ 6718884 (+)
G59347 NA other upstream 1230025 5495155 ~ 5497754 (+)
golga3 golga3,LOC102797501 other upstream 1258569 5448061 ~ 5469210 (+)
fbrsl1 LOC103357558 other upstream 1356911 5053233 ~ 5370868 (+)
LOC120560573 LOC104934257 other upstream 2109746 4571383 ~ 4618033 (+)
add2 LOC102210956,LOC102786375 other downstream 230810 6969119 ~ 6996856 (+)
zgc:65851 LOC103361079,LOC101467048,LOC102210174 other downstream 271337 7009646 ~ 7050772 (+)
LOC120560567 ier3ip1,yee9,LOC103361062,LOC100710589,LOC107393509,LOC105014506,LOC103152384 other downstream 836416 7574725 ~ 7576136 (+)
susd1 susd1 other downstream 861783 7600092 ~ 7623715 (+)
zbtb26 LOC104940087,LOC100710858,LOC102306976,LOC102206222,LOC101473380,LOC102792103 other downstream 887427 7625736 ~ 7630180 (+)

Expression


Co-expression Network