fbxo4 (fbxo4,LOC102798721)


Basic Information

Item Value
gene id fbxo4
gene name fbxo4,LOC102798721
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 24110320 ~ 24117183 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039803944.1
ACATGTCAAATATGGTGTTGTCGTCATCTCTCTAGGTCCGTATTATAGTGtaatgtaggctatattatCACTCATACTTGGAGTCATGGCAGGAAAGATCGAGCAGCTCAACCAGTCCGTTGTGATCGGCAGGCTCAGGCGGTTCAGAGAGAGATACTTTTCAAACAGTGGCAAAGTTGTCAAAGACGACTTGACACGGGATGTAGACACGGGAGAAGAGCCACTACCGGGATTTATGGATAGTTTACCGGTGGACTTACAGTTTCGGATCATGACCCTTCTGTCTCCTGCGGATATCTGCTGCCTTGGAGCCACCAGTCGGTACTGGAGGGCCATGGTTAGAGATCCATTACTGTGGAGATACTTCCTGCTCAGGGACATGCCATACTGGCCCTCCATTGATCATGTGAGCATGCCCCAGCTGGAGTTGTTGGATGCCCCACTAATCAATGAAGATGAGAGCCTGGATGATAGAGAAGAGGGGGATGACAAAGTGATGGAATTGAAATTTGACTACATGTCAGAaTACCTGAAAGGCTGTCCATCTTGCAGACAACAATGGCTTCCTTCGCGGCCGGCATATGAGGTTGTAACCTCATTTCTTCAGTCTCTGGTGCCCTCATCTGAACCACGTTATGCCATGTTTGGCCCTGGCATGGAGCAGCTGGATGTCTCTTTAGTCACAAGGCTCATGCATGCCCCAGATGTGCTTCCTGTGTCAGGAACTCCTCACAGACAGATAAATGGTATTGGCTCAGGGATCAGTTACATGTTCAACAACCAACACAAATTGAATATCCTGACGCTGTACTCAACCAATAGGGCCGAGAGGGAAATAGCCAGAGTGCAGCAGCAGAGCATCAGTAATAAACTTTTTAGCTTTGAAGGATCAGATGACTCAGGCTATCCAGTCTACAGCCCTGCTCCTCAGGTCCAGCAAGTGTGCCAGGTGGTGGATGGTTTCATCTATGTAGCCAATGCAGAGCCTGGGAGAGGTGACAGGGATTCTGAGGGGGCTCAGATTCGGGCTGTGCTGAGCTCTGCCGAGGGTTCAGCATCCAGGCCTCTGCTGGTGCTCTCCTGTGTCTCCAGAGAAGAAACGGAAGAGGTCAGGATAACCAGTCTGCAAACTTTTACCAGCAGAAACAGGGCAAGGTGTCGCACTCCCTGTGTCGACGTAGCAAAGAGACTCGGCCTACCCCAGCTGGCTAACCCCTGGATGGTGCAGGATACCGTAGCCGAATCCCTGTCAGGTCTTCTGGATGGCATTTCCTGGTTGCTGAGATGTTCTGGAGTCAAGCTCTATGGTAGCTAGTATCCAGCTTCTGCTGCTGCCGCCAGATGAATGAAAGCCACAAATTGCATTACTGCGTCATCCTAACACCAAGACTACAGAATTTCCTGAGTAATGTATACCACATGTGCGCTGAACGTCTCATGATTGGAGCACTGCCTTTGGGATTTCATGAACTGGATCTGCAACAGAACTAATGGGTTTCTAACTATAACTATGACTTGCATTTCCGTGACCATCGGACACTGCGTGCACTTGTTAGACGTTATTTCCTGCGTGGAGTGTGCTGCGCTGATAAAAAAGACGTATATAAAATGTTGTGCCACTTCCTGTGTCCACTATTTGGCActagacaacacacactatcACTACGTCAAATTTAAAGGTGGGGGCACTATCAAGCCAATTTGCTACACCAAAGCCTGAGACCCATATCACATATAATTTTTTTCACCACTTCTGATAGGTATGCATAGTTCCATGCGTTTTCGAGCACCTTTAGCCCCtcaaaaatgtgatttagttctaaaattaataatataggGATTTCAGGGCCTGAGGACTGCCCTAGAAAGTGGTGAAATCCATCCATGTAAAACCTCACTTTGACTATTACTACCCTACTTATCTTATATGCTACTTATATATGTAATAAGTATGTGGTACTTTAATTTATGTGCCATATCATGATGAGGTTTACAATCGGTGAAAGAATCTGGTGGCCCACTGTTTGGTTTAAAATGGGTAAGAGATTGTAAATTTTTTGACATGgcattttcagtgtttttttaaggCTCATAATGACCTGATTTACCACATTTTTACAGTTAGGCATATGTGCCAACAATCCTCCTACAAAAAGTCAGCTTGGATAACTCACACAAAATTCACTGCTTTCGGATCAATGATTTACAATCATATACTGCAAATATATGACTTTTAGAGCTAAACTGTAATACAAGCAAttgaataaaatattttatgtttatgCAATTAAGAACTGTTGCCTTTTGATACATGCTgcatatttata

Function

symbol description
fbxo4 Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process and protein polyubiquitination. Predicted to be part of SCF ubiquitin ligase complex. Is expressed in female organism. Orthologous to human FBXO4 (F-box protein 4).

NR:

description
F-box only protein 4

GO: NA

KEGG:

id description
K10291 FBXO4; F-box protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039803944.1 True 2327 mRNA 0.45 7 24110320 24117183

Neighbor

gene id symbol gene type direction distance location
c6h5orf51 clg12h5orf51,LOC104920657,LOC104943311,LOC103366194,LOC101465834 coding upstream 131 24105990 ~ 24110189 (+)
rgs7bpa rgs7bp coding upstream 96836 24004082 ~ 24013484 (+)
si:dkey-250l23.4 rnf180,LOC104964874 coding upstream 109515 23992653 ~ 24000805 (+)
ipo11 ipo11,LOC102795548 coding upstream 203864 23754325 ~ 23906456 (+)
ercc6l2 ercc6l2,LOC105014104 coding upstream 387791 23704402 ~ 23722529 (+)
ghra LOC103366197 coding downstream 9680 24126863 ~ 24162470 (+)
znf131 znf131,LOC102798529 coding downstream 57258 24174441 ~ 24181811 (+)
nim1ka nim1k coding downstream 64734 24181917 ~ 24202984 (+)
creb3l3l LOC103366202,LOC104958765 coding downstream 86339 24203522 ~ 24210442 (+)
gadd45ga gadd45g coding downstream 96058 24213241 ~ 24215089 (+)
G64188 NA non-coding upstream 5968 24101506 ~ 24104352 (+)
G64183 NA non-coding upstream 51559 24049968 ~ 24058761 (+)
G64172 NA non-coding upstream 93252 24015078 ~ 24017068 (+)
G64130 NA non-coding upstream 360485 23744939 ~ 23749835 (+)
G64127 NA non-coding upstream 375027 23734824 ~ 23735293 (+)
G64200 NA non-coding downstream 47494 24164677 ~ 24169528 (+)
G64235 NA non-coding downstream 117091 24234274 ~ 24234488 (+)
G64251 NA non-coding downstream 245292 24362475 ~ 24362909 (+)
LOC120560123 NA non-coding downstream 397636 24514819 ~ 24518873 (+)
G64279 NA non-coding downstream 743066 24860249 ~ 24862730 (+)
G64108 NA other upstream 417029 23692662 ~ 23693291 (+)
LOC120560905 clg12h9orf3,LOC103358904,LOC102294417,LOC101470200,LOC102214270 other upstream 548035 23487967 ~ 23562285 (+)
G63905 NA other upstream 1180115 22929899 ~ 22930205 (+)
LOC120560787 NA other upstream 2511031 21588876 ~ 21599289 (+)
G63480 rbm19 other upstream 3432404 20676417 ~ 20677916 (+)
prxl2c aaed1 other downstream 704131 24821314 ~ 24823066 (+)
cdc14b cdc14b,LOC102776968,LOC103141798,LOC106948523 other downstream 706535 24823718 ~ 24837448 (+)
LOC120561182 LOC104948667,LOC104930137,LOC103397628,LOC103366370,LOC107092578,LOC102226292,LOC106956829,LOC106919698,LOC103470079,LOC103141747 other downstream 1567781 25684964 ~ 25696576 (+)
LOC120560031 LOC104941040,LOC103357154,LOC102795853 other downstream 1797096 25914279 ~ 25915577 (+)
LOC120560359 NA other downstream 1808904 25926087 ~ 25928596 (+)

Expression


Co-expression Network