tmed7 (LOC104949726,LOC102200599,LOC100701005,LOC101484666)


Basic Information

Item Value
gene id tmed7
gene name LOC104949726,LOC102200599,LOC100701005,LOC101484666
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 21903212 ~ 21906827 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804009.1
TTCTAGACCCAttagagagagaagggggcGGGCTTTTACAGATGACAGCCAATCCTGTGTCACGTTTGTAAAACGCTACTTAGTTAGCATTAGTCGCATCCGGGTGAGCGCTTTAAGGTCCGCTCAGGTTTTTACTTTGAAGCTTGGTTCTCGGACATCAGGATGTACGGATCCTTTCGGGTGCTGTTGCAGGTGCTGTCGGCCCAGCTGCTCTGTGTATGGGTGCTGGGCTCCGAGCTAACCTTTGAGCTGCCAGACAACGCCAAACAGTGTTTCTACGAGGACATCATCATCGGCACCAAGTGTACACTGGAGTTTCAGGTGGTGACCGGTGGCCATTATGATGTGGACTGTCGTTTGGAGGACCCAGAAGGCACTACGCTCTACAAGGAGATGAAGAAGCAATATGACAGCTTTACCTTCACAGCAGCCAAGAATGGCACCTACAAGTTCTGCTTCAGTAACGAGTTCTCCACCTTCACACACAAGACGGTTTACTTTGACTTCCAGGTTGGCGATGACCCTCCACTCTTCCCCAATGAGAACAGAGTCACTGCCCTCACTCagATGGAATCAGCTTGCGTGTCCATCCACGAGGCCCTGAAGTCGGTCATCGACTACCAGACTCACTTCCGCCTCCGTGAGGCCCAGGGACGCAGTCGGGCGGAGGACCTCAACACCCGTGTTGCATTCTGGTCCATCGGAGAGGCCATTATTCTTCTGGTGGTCAGCATCAGCCAGGTGGTCCTGCTGAGAAGCTTCTTTTCTGACAGAAAGACCACTACAACACGCGTTGGATCGTAACAGTCTCTGAGCCCCGGAATCTAATTCATCACTTTCTTTATCCGTACCTGGACTGGTGTGCATAGAGTGGGTTAGAATATCAGTGCTGATCTAAAATTGGATCATATCAAACTGCCAGGTTGCACAATCTGACATGTCGTCTTCATTCTGCACTGGTATTCTTACAAACATTATGCAAATGAGTCTTGAAGTCTAAAAGGTTAAATACGTTTAAAATGGTTGTGAGGGGTAAAATGAAAAACCTGAAGGAAGGTTTTCTTGTTTGTGTCGCTTGTACCATCTGTATTGGAGGCAGTTCAAGGTCCTATAGTTGAAGCAAACCCTAAATAATTTGAAGTAGAGCTCGGCAATGTGGAgaatatcaaatatcacaatattttggaccaaataccTTTATCGATATaacaacgatattgtagggttgcctattggtgcttttacaaactatttacagaatgagatttttttgacaaataatCAGACGTACCATAGATATGACttaagtggttaaaggcaaataatagaatagCTAGAAGTaaggtaagttcagaaaatatcGCATTAATGTAATGCAGCCTGtagaaccaggaaaagacaacacttaccatattacgatatccaaaatttaagaagATATCTTTTATCACAATATTGAtaaattgcccagccctactttaaatATTCGAAATAATTTCTAAATGTGTTCTgattttatttgttctttttttccccccgtcATCTCAAAACCTCTCTTCTTGATCTGTTTCATTTTTCAGCCCAAAATGTGCACTGAAATAACAGAGAGTGGAATTTGTGACTAAATGTATATAATGTAAGGTTTATGGTTTTGTTTATTTCCTTGCATGCAAAGCATTGGGTCTCCAAAACCACACTGGCAAGGCAAAGAGTGGTTCCCCCACAAACGTTGCATTTGGTCATGaaaaaaatttctttttttttttctttattaaatCTCGCTGTATTAAGTGAGAGTa

Function

NR:

description
PREDICTED: transmembrane emp24 domain-containing protein 7-like

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K20349 TMED7; p24 family protein gamma-3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804009.1 True 1799 mRNA 0.43 4 21903212 21906827

Neighbor

gene id symbol gene type direction distance location
LOC120560549 smad4,LOC104933118,LOC101068039,LOC101168872 coding upstream 11073 21880130 ~ 21892139 (+)
rasef rasef coding upstream 119295 21765626 ~ 21783917 (+)
LOC120560723 NA coding upstream 141037 21751888 ~ 21762175 (+)
frmd3 frmd3 coding upstream 151628 21692150 ~ 21751584 (+)
LOC120560432 NA coding upstream 224148 21672207 ~ 21679064 (+)
fem1c fem1c,LOC102782917 coding downstream 1809 21908636 ~ 21917879 (+)
LOC120560655 ccdc112 coding downstream 23346 21930173 ~ 21936780 (+)
pggt1b pggt1b coding downstream 30173 21937000 ~ 21951913 (+)
trim36 trim36 coding downstream 48751 21955578 ~ 21989582 (+)
ccser1 ccser1,LOC102783788 coding downstream 84526 21991353 ~ 22121315 (+)
G63715 NA non-coding upstream 27525 21875445 ~ 21875687 (+)
G63714 NA non-coding upstream 58074 21844832 ~ 21845138 (+)
LOC120560273 NA non-coding upstream 282501 21608823 ~ 21620711 (+)
G63641 rmi1,LOC102777824,LOC104967280 non-coding upstream 284610 21616223 ~ 21618602 (+)
G63628 NA non-coding upstream 416174 21486769 ~ 21487038 (+)
G63792 NA non-coding downstream 225057 22131884 ~ 22150124 (+)
G63872 NA non-coding downstream 997208 22904035 ~ 22905966 (+)
G63914 NA non-coding downstream 1080354 22987181 ~ 22988040 (+)
LOC120560300 NA non-coding downstream 1313023 23219850 ~ 23245368 (+)
G63976 smim15,LOC106580593,LOC103398561 non-coding downstream 1368093 23274920 ~ 23281109 (+)
LOC120560787 NA other upstream 303923 21588876 ~ 21599289 (+)
G63480 rbm19 other upstream 1225296 20676417 ~ 20677916 (+)
wdr31 wdr31,LOC102796061 other upstream 1412626 20473651 ~ 20490586 (+)
vps13a vps13a other upstream 1461119 20400947 ~ 20442093 (+)
c6h2orf68 c21h2orf68,c9h2orf68,LOC104941594,LOC103363183,LOC104920309 other upstream 2139688 19759596 ~ 19763524 (+)
G63905 NA other downstream 1023072 22929899 ~ 22930205 (+)
LOC120560905 clg12h9orf3,LOC103358904,LOC102294417,LOC101470200,LOC102214270 other downstream 1581140 23487967 ~ 23562285 (+)
G64108 NA other downstream 1785835 23692662 ~ 23693291 (+)
prxl2c aaed1 other downstream 2914487 24821314 ~ 24823066 (+)
cdc14b cdc14b,LOC102776968,LOC103141798,LOC106948523 other downstream 2916891 24823718 ~ 24837448 (+)

Expression


Co-expression Network