LOC120561052 (LOC104921679,LOC106580276,LOC105940836,LOC102302829,LOC106700476)


Basic Information

Item Value
gene id LOC120561052
gene name LOC104921679,LOC106580276,LOC105940836,LOC102302829,LOC106700476
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 26790198 ~ 26791064 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804018.1
ATGCCCTTTAACACCACCGTCCCGTTGTCGGTGGATTTCAAAACACCGGAGGACTTCCTCATCTTCATTTTCCATATTCTGTTCGCCACAAGCGCCGTGCTCGTCGCCGGCTCGGTGGTCATCGCGATTTCCTCCAACCGGTACCTGCGAGGCCAGAACCGTTTTATATTCATGCTGAACACGAGCATCAGTGACACTCTGACCGGCTTCTCGGTCTACTACCTCGGCCTCTTCGACGTCCAAGAGGGCTATCCCTCGAGGAATGGGACGTACTACATTTTACCCTCATTTCTAGGTGTCAACGTCTTAACCTTCCTCTTCGCTCAGTTTGACCGGTACTTCGCCGTGTGCCATCCATTCTTTTACAACCGCTATATAACGAGGTCTTTTGTTATTGGCATTTGCGCGTTTTGTTGGATTTACACATACTCTATCCTCACGGTGCAGAACATGGTGCCTATTTCAAAAGCGGCTCAAATAAACGCGTTTGGTGTAATGACTCTACAGATTATTGTACTCACTAAAGTGTTGATGACAATTAAGTTATACAACATAGCCAGGAACCACCTGGCGAGAGAGGCGCCCAGTGCCGAGAGAGATAACAAAAAGGAGTCGCTGCGCATCATTGTGTTTGTGGTTATTTGCTTCTTGGCTCTGTGGTGTCCATCCTTTGTCAATATAATTGTTAGACAGTTGACGAGTAATGGTCTCAGGTTTAGGAATGAAGCCACTAACCTGTTCGCCATCATGGCACGCCTGAACGCACTGGTGACCCCGGCTGTGTACATCTGGGGCAGCCCGGCGCTACGGAAGGCCCTGTGGAGAACAGTGTGGCGGAGGGTCTGTCCCTGCCGGACGGCAAGGTGA

Function

NR:

description
PREDICTED: C5a anaphylatoxin chemotactic receptor 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804018.1 True 867 mRNA 0.50 1 26790198 26791064

Neighbor

gene id symbol gene type direction distance location
pi4kab pi4ka coding upstream 71082 26687332 ~ 26719116 (+)
si:dkey-178e17.3 sbspon,LOC103359527 coding upstream 110200 26666733 ~ 26679998 (+)
si:dkeyp-117b11.1 NA coding upstream 182564 26597995 ~ 26607634 (+)
plat plat coding upstream 192885 26585780 ~ 26597313 (+)
vdac3 vdac3 coding upstream 236467 26543026 ~ 26553731 (+)
LOC120561053 NA coding downstream 2627 26793691 ~ 26794572 (+)
LOC120561461 LOC106926604,LOC102220481,LOC108166557,LOC108233617 coding downstream 6759 26797823 ~ 26799241 (+)
utp15 utp15 coding downstream 38987 26830051 ~ 26837172 (+)
LOC120560731 arhgef28,LOC104956788,LOC103359538 coding downstream 46208 26837272 ~ 26876951 (+)
osmr NA coding downstream 85969 26877033 ~ 26887826 (+)
G64944 NA non-coding upstream 105943 26682518 ~ 26684255 (+)
G64930 NA non-coding upstream 126672 26662767 ~ 26663526 (+)
G64893 NA non-coding upstream 209385 26572244 ~ 26580813 (+)
G64841 enkd1,LOC102781555 non-coding upstream 249562 26540415 ~ 26540636 (+)
G64840 NA non-coding upstream 249975 26538658 ~ 26540223 (+)
G64967 ykt6 non-coding downstream 102637 26893701 ~ 26896143 (+)
LOC120560738 NA non-coding downstream 106838 26897902 ~ 26899558 (+)
G65083 NA non-coding downstream 408885 27199949 ~ 27200190 (+)
G65106 NA non-coding downstream 587934 27378998 ~ 27379215 (+)
G65108 NA non-coding downstream 598393 27389457 ~ 27389862 (+)
si:dkey-178e17.1 slc25a1,LOC100697273,LOC101470788,LOC103359526,LOC102784907,LOC107394264,LOC103145904 other upstream 128303 26644661 ~ 26661895 (+)
cltcl1 LOC100691387,LOC103359525 other upstream 146031 26614237 ~ 26644167 (+)
c6h22orf39 clg12h22orf39 other upstream 293211 26494284 ~ 26496987 (+)
G64814 cldn5,LOC103357131 other upstream 375601 26412869 ~ 26414597 (+)
nsd3 whsc1l1 other upstream 406355 26359120 ~ 26383843 (+)
ndufs4 ndufs4 other downstream 221146 27012210 ~ 27039599 (+)
G65084 lipg other downstream 414170 27205234 ~ 27370959 (+)
mboat4 NA other downstream 2054562 28845626 ~ 28849471 (+)
ubac1 ubac1 other downstream 2553516 29344580 ~ 29351756 (+)
fbxo21 fbxo21 other downstream 3395784 30186848 ~ 30212108 (+)

Expression


Co-expression Network