mamdc2a (mamdc2)


Basic Information

Item Value
gene id mamdc2a
gene name mamdc2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 3630736 ~ 3675225 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804121.1
CTCATAAGGTCGACTCGTTGCTGACCGACACATCCTACCGCCCCCGGGagatccattcatccatccacccaCACACCGGATAATAAAGAAAAGCCTGCATCTCTGCTGCTGACATTACAACATGTGAAAGACTCTTCGCTGTTGGCCTGTAGTTCTTTGGGGGATTTACCGGGAGCAGATCAGAAACTACAGTCTCTCTGCACCGCGGACACGATGAGCAGCGGCCGCCTCTCTCTGCACGTACTGCTCCTGTGCGGACTCCTTCgggcgcagcagcagctgctgcccGGGTCCTGCAACTTCGAGCTGGGCACCTGTGGCTACACATCCGACCCGGAGTACGGCAGCTGGAGCATGAATGAAGAAGGGCATTTGATAACAGTGGACTCAGCCTTCTTGAAGGAGCAGGAACATGCAGTTCTGGTCAGTCCAGTCCTGGAGCAGCAGGACTGGAGCTGTGTGAGGCTGGTGTACCAGATCACTGGACAGGGTTCCCTGCAGCTCCACCTCAGACCCGACGGAGACAACTTTGACTACCGACTGTGGAGCGCCAACAAAGCCTCTGACAGCTGGCTCATTGCTAGTGTGGACCTGCCAAACACCACCATCCCCTACCAGGTTTTGTTGGAAGGTCGACCTGAACGGGACCCAGGGAACAACGTGGCCATCTTTGAAATTCACATTGTTCCTGGTTTCTGTATAGAGTGTAACTTTGAGGAGCATCACCTGTGTGGCTACAGTAACAGCTGGAACCCAAACGTCAACTGGTACGTTGGGGGGAGTGTGGCCAGAGAGTCCAACCTGCTGCTAAACCACACCACCAACAACCAGagagGCCACTACATGTATGTGGACTCGGTGTACGCCAAGCACTTCCAGGAAGTAGCCAAGCTGACCTCGCCCATGACCACGGCGCCCATGGCCGGCTGCCTGTCCTTCTACTACCACAGAGACCAGGAGAGGGGAAACATCTTCTCAGTTTTCACCAGAGACCAGCTGGGCCACTATGAGGAGATCTGGAGGCCAGAGGTGTACGCTACTCCCGGCTGGACTCAGGTCAGCGTGGACATCAAGGCCCCGCACCCCCTGGAGgTGGTGTTTGAGGTGGCTTTTAACAGTGCCAGAGGTGGATACGTGGCCATAGATGACATCTCCTTTTCTCCTGAATTCTGCCACACTGACACAGAGCcgacctttgacccctctaTAGCCAACTGTGACTTTGAGAATGGGCTGTGCCTGTACTACCAGGAGAGGACGGAGAGTAAGGTGTGGAGCAGAGTCACAGTCAAGCCCAACGCCTACAGGATAGGAGACCATACCACCGGAGCAGGCTGTTTCCTCCTGGCCAACACGCGTTTCACTGCTAGGCCCGGCTATGTGGGTCGGCTTCACGGTCCCTTCTTACCAGGGAACCACAAATACTGCGTGAGGTTCTACTACATGCTTCATGGATTTCGGAAAGTAGACAATGCTCTGGTTCTTTACATTTATGACGAGAACAATGTGGCCCAGGAGAAGGTGTGGAGCCTGGCTGACACTTCCGCGGCTGTGTGGACTGAGGTGGAGATCACCTACATGAAGCCCATGCTTTCCAAGCTAGTGTTTGTCAGCATATGTAAGAACTTCTGGGAATGTGGCCTGGCAGCCATCGATGACATCACTGTCAGCCTGGGGGACTGTCAAATCACAGCAGGCTCCCTCCCAGGCCGGTGTAACTTTGAGAGTGGAGTCTGTGGCTACATCCAGGATAAGAAAGAAGACAAAGCCGACTGGCTGCGAGTCCGAGGACACACCCCCACCTCCTATACAGGGCCCAGAGGAGACCACACTACTGGGGTGGGTTACTTCATGTACATCGAGGCGTCTCTCATGCGTCCGGGTCACAAGGCTCGGCTGCTGACCTCTGATCTGCGGGGCGCCTCGTCCCCCCAGTGTTTGATCTTCTACTATCACATGTATGGATCTGGCACCGGCATACTGACCGTGCTCCTGCGccgcagcagcagagagcaggacGCGTTGCTGTGGAGACGCCGCGGGGAGCAGAGTGTCAGCTGGATGAGGGCGATGGTGGACTACCACTGTGATGTCCGACACCAgATTATATTCGAAGCCATCCGAGGCCCATCACTACGAAGTGATATCGCAATTGATGACATCCAATTTAAAAGGGGACCATGTGAAGATCCTGGTGACATCACTCCATACTCAGGCTTCTCAGAGTATTTCAATGAGATTGAGAATTGAGACTGGAGGGAAAGTCTTTCTGCATAAATGCTTGGTAGTTTTTCCGAGTTTGGCTGGGTGGCTTTCAGAAGTGTGAATGTGAACCATCCACCAAGACAATTTACAGAGTTGTAGAGCAATGTATATGATGCAGCCAATAATTGGAATTGTATTAAACACTGGGGAATGGTTGGGATTTCTCCTTGGGACAACGTTATCCAGCTACATCTCACAACAGTCACACCAAAGGTCCATATAGGCTGGCTCACTAtccatctctctcacacataatGCAAAACTCATACACTGGCAAGTAAAGCCTAAATGCAGCCTTCTGTCCACTCAAGCATAAGAGTATTGCAGGTATTAAAGTCTGTTTCTACCTTTTTGAAACTTTA

Function

symbol description
mamdc2 Predicted to enable glycosaminoglycan binding activity. Predicted to act upstream of or within peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan. Located in endoplasmic reticulum.

NR:

description
MAM domain-containing protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804121.1 True 2627 mRNA 0.53 14 3630736 3675225

Neighbor

gene id symbol gene type direction distance location
fam189a2 LOC104953220 coding upstream 83403 3525307 ~ 3547333 (+)
fxn fxn coding upstream 247156 3375881 ~ 3383580 (+)
hmgcra hmgcr coding upstream 259236 3358143 ~ 3371500 (+)
zfr zfr,LOC103397483,LOC102308294 coding upstream 360629 3247454 ~ 3270107 (+)
imp4 imp4 coding upstream 384754 3240129 ~ 3245982 (+)
arid3c LOC103046366,LOC105901092,LOC107676636,LOC107552548,LOC108438346 coding downstream 12820 3688045 ~ 3775673 (+)
LOC120561175 ube2l3,LOC106562742,LOC104961333,LOC107396654,LOC102226353,LOC107088009,LOC108248341 coding downstream 143097 3818322 ~ 3827427 (+)
rad17 rad17,LOC102794325 coding downstream 173254 3848479 ~ 3868576 (+)
ccdc125 NA coding downstream 193808 3869033 ~ 3889655 (+)
si:dkey-3h3.3 NA coding downstream 524298 4199523 ~ 4208499 (+)
G58948 NA non-coding upstream 24427 3606062 ~ 3606309 (+)
G58944 NA non-coding upstream 74557 3547808 ~ 3556179 (+)
G58941 NA non-coding upstream 107115 3522846 ~ 3523621 (+)
G58900 NA non-coding upstream 125987 3504451 ~ 3504749 (+)
G58899 NA non-coding upstream 134837 3495104 ~ 3495899 (+)
G58986 NA non-coding downstream 123813 3799038 ~ 3803097 (+)
LOC120561177 NA non-coding downstream 162082 3837307 ~ 3837679 (+)
G59033 NA non-coding downstream 215820 3891045 ~ 3891853 (+)
G59032 NA non-coding downstream 220445 3895670 ~ 3896241 (+)
G59042 NA non-coding downstream 285835 3961060 ~ 3961319 (+)
LOC120560521 tjp2 other upstream 107980 3435165 ~ 3522756 (+)
lman2lb NA other upstream 746875 2878374 ~ 2883861 (+)
dock5 dock5 other upstream 1318071 2273678 ~ 2312665 (+)
lmx1bb lmx1b,LOC102213269,LOC100696266 other upstream 2792875 789405 ~ 837861 (+)
LOC120560799 NA other upstream 3418353 210742 ~ 212383 (+)
G59086 NA other downstream 442054 4117279 ~ 4117631 (+)
G59172 sub1 other downstream 748916 4424141 ~ 4429981 (+)
trnal-aag_1 NA other downstream 756946 4432171 ~ 4432253 (+)
trnaq-uug_2 NA other downstream 757443 4432668 ~ 4432739 (+)
mrpl41 mrpl41 other downstream 854829 4530054 ~ 4531165 (+)

Expression


Co-expression Network