arrdc1a (LOC103353853,LOC104923796)


Basic Information

Item Value
gene id arrdc1a
gene name LOC103353853,LOC104923796
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 12610416 ~ 12635123 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804145.1
AAATGCTCATGTTGTTTGCGCGACCAGGTGAGCTTCACTCTCGCTGTGGATCGGGCCAAACATGGGCAAACTTCAGGAGTTTGAGATCAcgtttgacaaaaacaaagtggtgtaCACTCCGGGTGAGTCTATCTCTGGAACCGTGAGATTCAAACTGGGACAGCCGCTGCAGTGTAAAGCAATCAAAGTGAACTGCAATGGTTTCTGTGGCATCACCAGTAAGATAAATGAGACGGCATGGTCTGAGGAGGAGCAGTACTTCAACAGTACCATCTCTGTTGCAGACAAAGGAACCCTGATACAGGGAGTGCAAACCTATCCCTTCAAGTTTCTCATACCAGCCTCTGCTCCGACATCTTTTGAAGGCAACTATGGTAAGATCATTTACAGAGTGAGAGCTTTCATCGACACACCACGATTCGCCAAGGACTACAGCACAGAGAAACCTTTCTACCTGCTAAGCCTTCTAAACCTGAATGAAGTGCCAGACATATGGGGAAAATGTTCATCTGCAGTGACGCAGCAGTTCACCTACATGCTGATGAAAACCGGCACAGTGGACATGAAGGCCCAGACAGACATGAAGGGTTACACACCAGGCCAGGTCATCCAGGTGTTGACCAACATCCACAACCAGTCTGGAAAGGCCACAGGCAACATGGCGGCCAGCCTGATGCAGAGAGTGACCTATGAGACGAAGAGGCCCACCTATGACGTGAGGACGATAGCAGAGGTGGAGGGTGGTGTGGTGAAGGCTGGCAAGGAGGTGGAGTGGAAGGAGCAGATCATcgttcctcctcttcctcagtcCTCCCTCGCTGGCTGTGAACTTATAAAGATCGAATATTATGTCAAAGTCGGTTTAAAGTCTCCAGATGTCATGCTGACGTTACCCATCCACATCGGGAACGTCTCCCTAGACAAAAAACTGCAGCCTTGCAATAAAGCAGCCACTCCCTCCTCTGCCAAAGCTGAAGACACGCCAGCATTGGCCTCTACGCCTGACACCGTCATCGCCACCACCCCCAACGTGGCCCCTCGCCCTGCCCCAAAACCCGCTCCCCGCCCCAGCGCTCGCTCCAGGATGTCCTCGCTTAATTCCCCCAGCGCTCCTCCCGCTGACTACCACCAGGGAGCAGAGGGTGGGACACCGATAAACGATGGCTTCCCCAACAAGCGCCAGTCTCAGCTGGTGTCACCCCACGCTTTCAGCTATGCTCCCGGCCTCTTTTTTCCCCACAATCAGCAGCCCAATGGGCCCAGCACTGCACCCAGTGGGCCTATGTTCAGTGGGTCCACAGGGGCCACAGCACCTTACCCCCCTGAGAATGGCGCTGGCTCAATGCCGACACCACTCATCCTGCCTCCGGACTACGGCACTTCAGCATATCCACAAGAGGCACCTCCTTCTTATGATGCGAGCTGCAACACATGAAGTGGATAAGGAACCAGCAACCTTGCACCAGAATGGCGATCAGTTcactctgatttttttttttttaaatgttgtcctgccatttaaaaaataaataaataaaaggttgtaACTTACTTGGACAAAATGATTGCAAGAAACAGGAAACCTAATGTTACCTGGTATCATGAAGGTGTTTTATCTTTTCATAATGTAACTGCTGCCCAGTGAAGTACCCTCACTAATCTAATGGGGGTTATTCTCTCCTTTTAAACAAGTCCATAGCTgtcctttatttttatttttatttttggtacTAAGTGAAAGGAAAGACGAGGGGAATTGCATAATTTAATTTGCTGTTCTTTGTACGGTAAGAGGAGTCATGTtcttagttgtgggttatttaGAAATCCCTCAGATGGCATCTGTGATGTCAAGGTGGAACGTTTTATGTATGAAAGCCTGAGCAAAACAAACCCATCTCATCTGGTATTTTGTCTAATATCCTCATTTCTTCAGaagccaaataaaaaaattatggattttttttttttattattattggaaACTGGTGAAATCAACTTTATTCTTctggcaaatttttcatttaGTTTGAAATTTAAGACTGGATCAAACACTTTGTTTAGAAAGATTTAGAAAGATGTTGATTTATGATAATGAACAATCCCGATATTGCTGTTGCAAGTTGTCTACATACAGCTTTTTATATAATGCTAATAAGATTAGCCTCTTATGATTTCTTCCCTGTTATCATTTGCGACATTCATGTTCTTGAACTGTGTTAAAATTACTATTATGTTGATTTCCTTCGAGACATGGTGTTTAGTGTGTTCCCTGCCCTGCTGAATGTCTGTTGGTTCTGTATATGCCAGACATCCCTTCTCCGTCtcatttattatattacaaCAGTTGTACAATAATGCAAGAGCATTGTGATTTTAAGTTGTCTTTGGTCCTTCCTGATGTCGTTTTGCATCCTCTATCTTAATCGGAGAATTTTGTGAATAAGTTTtaaatttttatgttttttaagaAATATTGTTTGGGACATTTTCATCTTTATTTCACctagtagagagagagagagaagggtatgacatgcaacaaaggtcccaaGGCCAGAATCGAGCCCCGGGCGTGGTTATTTGGCATGTGCTGTAACCAATCAAATGCCATGGCTACCAtttaatatgtatatacatatttattgtTTTGAGTGTTTCCACCTGTTGTCAAGATTTTAATAAATGTGTTAAAACCA

Function

NR:

description
PREDICTED: arrestin domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804145.1 True 2699 mRNA 0.44 8 12610416 12635123

Neighbor

gene id symbol gene type direction distance location
ehmt1a NA coding downstream 9424 12557567 ~ 12600992 (-)
LOC120560512 NA coding downstream 316628 12253167 ~ 12293788 (-)
man1b1b LOC103359688 coding downstream 390059 12158633 ~ 12220357 (-)
noxa1 LOC103359690 coding downstream 494175 12081499 ~ 12116241 (-)
niban2b LOC106585213,LOC107560233,LOC107715759 coding downstream 894468 11641802 ~ 11715948 (-)
LOC120561146 LOC104923795 coding upstream 6732 12641855 ~ 12643156 (-)
nelfb nelfb,LOC102791926 coding upstream 17495 12652618 ~ 12669126 (-)
LOC120561416 entpd2 coding upstream 38574 12673697 ~ 12692346 (-)
tubb2b tubb2b,tubb4b,LOC103024866,LOC101061694,LOC105901187 coding upstream 286046 12921169 ~ 12923705 (-)
LOC120561256 NA coding upstream 309721 12944844 ~ 12948355 (-)
G61051 NA non-coding downstream 5990 12603805 ~ 12604426 (-)
G60955 NA non-coding downstream 453064 12144056 ~ 12157352 (-)
G60914 NA non-coding downstream 612138 11998058 ~ 11998278 (-)
G60913 NA non-coding downstream 623547 11986620 ~ 11986869 (-)
G60911 NA non-coding downstream 627305 11982891 ~ 11983111 (-)
G61083 NA non-coding upstream 8923 12644046 ~ 12644532 (-)
G61084 NA non-coding upstream 9605 12644728 ~ 12644952 (-)
G61085 NA non-coding upstream 11243 12646366 ~ 12646567 (-)
G61124 NA non-coding upstream 151840 12786963 ~ 12788320 (-)
G61119 NA non-coding upstream 201526 12836649 ~ 12874616 (-)
LOC120561038 LOC102778062,LOC101486272,LOC102199534,LOC108245630 other downstream 55131 12293707 ~ 12555285 (-)
LOC120561001 whrn,LOC102797690 other downstream 548770 11901650 ~ 12061646 (-)
abca2 abca2 other downstream 1016756 11285385 ~ 11593660 (-)
G60715 NA other downstream 1420675 11189142 ~ 11189741 (-)
unc5db unc5d other downstream 2091449 10122152 ~ 10518967 (-)
G61264 NA other upstream 953916 13589039 ~ 13589332 (-)
si:ch73-138n13.1 LOC102794857,LOC107084631 other upstream 1693028 14328151 ~ 14364326 (-)
trnaa-agc_14 NA other upstream 2303852 14938975 ~ 14939047 (-)
trnaa-agc_15 NA other upstream 2309373 14944496 ~ 14944568 (-)
trnae-cuc_15 NA other upstream 2313636 14948759 ~ 14948830 (-)

Expression


Co-expression Network