Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC120561175 |
| gene name | ube2l3,LOC106562742,LOC104961333,LOC107396654,LOC102226353,LOC107088009,LOC108248341 |
| gene type | coding |
| species | eurasian perch (Perca fluviatilis) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_053117.1 |
| NCBI id | CM020914.1 |
| chromosome length | 43979800 |
| location | 3818322 ~ 3827427 (+) |
| genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
| symbol | description |
|---|---|
| ube2l3 | Enables several functions, including ubiquitin conjugating enzyme activity; ubiquitin protein ligase binding activity; and ubiquitin-protein transferase activator activity. Involved in several processes, including cellular response to glucocorticoid stimulus; positive regulation of ubiquitin-protein transferase activity; and protein K11-linked ubiquitination. Located in cytoplasm and nucleus. |
| description |
|---|
| PREDICTED: ubiquitin-conjugating enzyme E2 L3-like |
| id | name | namespace |
|---|---|---|
| GO:0008152 | metabolic process | biological_process |
| GO:0016881 | acid-amino acid ligase activity | molecular_function |
| id | description |
|---|---|
| K04552 | UBE2L3, UBCH7; ubiquitin-conjugating enzyme E2 L3 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_039804162.1 | True | 1994 | mRNA | 0.46 | 4 | 3818322 | 3827427 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| arid3c | LOC103046366,LOC105901092,LOC107676636,LOC107552548,LOC108438346 | coding | upstream | 42649 | 3688045 ~ 3775673 (+) |
| mamdc2a | mamdc2 | coding | upstream | 143097 | 3630736 ~ 3675225 (+) |
| fam189a2 | LOC104953220 | coding | upstream | 270989 | 3525307 ~ 3547333 (+) |
| fxn | fxn | coding | upstream | 434742 | 3375881 ~ 3383580 (+) |
| hmgcra | hmgcr | coding | upstream | 446822 | 3358143 ~ 3371500 (+) |
| rad17 | rad17,LOC102794325 | coding | downstream | 21052 | 3848479 ~ 3868576 (+) |
| ccdc125 | NA | coding | downstream | 41606 | 3869033 ~ 3889655 (+) |
| si:dkey-3h3.3 | NA | coding | downstream | 372096 | 4199523 ~ 4208499 (+) |
| LOC120560812 | thg1l,LOC106912903,LOC103154062 | coding | downstream | 398609 | 4226036 ~ 4227032 (+) |
| pdzd2 | LOC102293871 | coding | downstream | 444077 | 4271504 ~ 4343670 (+) |
| G58986 | NA | non-coding | upstream | 15225 | 3799038 ~ 3803097 (+) |
| G58948 | NA | non-coding | upstream | 212013 | 3606062 ~ 3606309 (+) |
| G58944 | NA | non-coding | upstream | 262143 | 3547808 ~ 3556179 (+) |
| G58941 | NA | non-coding | upstream | 294701 | 3522846 ~ 3523621 (+) |
| G58900 | NA | non-coding | upstream | 313573 | 3504451 ~ 3504749 (+) |
| LOC120561177 | NA | non-coding | downstream | 9880 | 3837307 ~ 3837679 (+) |
| G59033 | NA | non-coding | downstream | 63618 | 3891045 ~ 3891853 (+) |
| G59032 | NA | non-coding | downstream | 68243 | 3895670 ~ 3896241 (+) |
| G59042 | NA | non-coding | downstream | 133633 | 3961060 ~ 3961319 (+) |
| G59093 | NA | non-coding | downstream | 305421 | 4132848 ~ 4133064 (+) |
| LOC120560521 | tjp2 | other | upstream | 295566 | 3435165 ~ 3522756 (+) |
| lman2lb | NA | other | upstream | 934461 | 2878374 ~ 2883861 (+) |
| dock5 | dock5 | other | upstream | 1505657 | 2273678 ~ 2312665 (+) |
| lmx1bb | lmx1b,LOC102213269,LOC100696266 | other | upstream | 2980461 | 789405 ~ 837861 (+) |
| LOC120560799 | NA | other | upstream | 3605939 | 210742 ~ 212383 (+) |
| G59086 | NA | other | downstream | 289852 | 4117279 ~ 4117631 (+) |
| G59172 | sub1 | other | downstream | 596714 | 4424141 ~ 4429981 (+) |
| trnal-aag_1 | NA | other | downstream | 604744 | 4432171 ~ 4432253 (+) |
| trnaq-uug_2 | NA | other | downstream | 605241 | 4432668 ~ 4432739 (+) |
| mrpl41 | mrpl41 | other | downstream | 702627 | 4530054 ~ 4531165 (+) |
