cdo1 (cdo1,LOC102791980)


Basic Information

Item Value
gene id cdo1
gene name cdo1,LOC102791980
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 25567704 ~ 25573107 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804190.1
TAAGCCACTGCAGAAAGTTGGTAAGAGAAACCTTTTGTTTTAGCTGAACAGAAATATCTGCGAAATAACCTTCTGCAGAGAGATGGAGCACACCGAGGTGGTGAAGCCAGAAACTCTGGATGACCTGATCAAAATCTTGCATAAAATCTTCGAGAGTGACAGCATCAATGTTGAGGAGGTCCAAGGCATAATGGAAGCATATGAGAGCAATCCTCAGGACTGGGTGAAATATGCAAAGTTTGACAAATACAGcACCTTTGATGGCTGCTCTAAAAAGTCAAACTGCACTTGGAAAAACAGGTACACAAGGAACTTGGTTGATGAGGGTAACGGAAAGTTCAACCTCATGATTCTGTGCTGGGGAGAAGGCCACGGCAGTAGCATCCACGACCACACAGACTCCCATTGTTTCATGAAGCTGCTGCAGGGTCAACTAAAGGAGACGCTGTTTGAGTGGCCGGACAGTAAATCACAAGGAGAAATGGTCCAGAAGTCACAGAGAATTCTCCAAGAAAACAAGGTTGCTTACATAAACGACTCCATTGGCCTACATCGTGTGGAAAATGGCAGCCACACAGAGTGTGCAGCCAGTTTGCACCTGTACAGTCCCCCTTTCCAGTCCTGCCAGACATTTGACCAGCGGACGGGGCACAGGAACACCGTCAAGATGACCTTCTGGAGCAAAAAGGGCGAGAGGACTCCATTTGAAACCACATTCTCACAAGAGAACAACTAATAGTCACCAAAGGAGGCTCCAGATGAGGAAGACAGTTgtgttgaaatgacaatgttGTAAAATTGATTCAAGGGAAACTGCTTGGGAAGCAAAATGTGGACCTACTATGACTAAGCAACCCATTTAAAAAATCAGGAGCGGGCCGGTTCAAAAGGACAACTCAGTAATTAGAATGGCTTTATCGCTGCCCAGTGTGAGCTTGGCAAATACTGATGAGCACAGGACGAATGCATGAATAGGCTTGGACATGGATTGAATCTGCCTTTTGTTTGCTAGGCCTGAGGAGACCCTTTTCCAATAACAACATTCCTGTCCAGCCACGACCTGTGTAACAACACTTTTGAAAAATTATGGCCCATAGTCAAAGAGCTGAGCTTTGGCATTTTCAAAAAGGGGGGGATATATTGTAATAGTGTTTAAATTTCATATCTCAAGAAAAGGAAAATAGTAAATGATGGAGCATTTTTATAGCTGTATTTACTGTCAATTTAGACCACTCAAAATTGTCTTAACACCTGTTGAAAATTGTGATGATGTAACATTGTTTGTATAATCTAATTAACAAAAAGTTTGTTCCATTTGCATTtggaaaaagaaatgtaaagctttagagttgtgttgtttttaaaagtgctaTGGTTGTAATTTATTTGCAGGGAAGAGAGTGTTTGAATCGGCAAGCTTCCGTGTTACTCCTTAATGTATTCGTACTTAAGTTTTGACCAAGAAAGTCTTTTGTATTATTAGCAGACAATATGTTCAGTTAAAACACATACCTTTTCTCAGGATTTTGGCATATTTTTAATTGTAGCTGTATttatagtgtgtagtttttaCAGCATAGCATAGCACTGTCAAATGCATAAGTGATTTCTGTGATGCAGTAAATGATAAATCTGGCCATAACTGTAGACCATTAAACACCATTACCCTTTcacagaa
>XM_039804191.1
AAGCCACTGCAGAAAGTTGGTAAGAGAAACCTTTTGTTTTAGCTGAACAGAAATATCTGCGAAATAACCTTCTGCAGAGAGATGGAGCACACCGAGGTGGTGAAGCCAGAAACTCTGGATGACCTGATCAAAATCTTGCATAAAATCTTCGAGAGTGACAGCATCAATGTTGAGGAGGTCCAAGGCATAATGGAAGCATATGAGAGCAATCCTCAGGACTGGGTGAAATATGCAAAGTTTGACAAATACAGGTACACAAGGAACTTGGTTGATGAGGGTAACGGAAAGTTCAACCTCATGATTCTGTGCTGGGGAGAAGGCCACGGCAGTAGCATCCACGACCACACAGACTCCCATTGTTTCATGAAGCTGCTGCAGGGTCAACTAAAGGAGACGCTGTTTGAGTGGCCGGACAGTAAATCACAAGGAGAAATGGTCCAGAAGTCACAGAGAATTCTCCAAGAAAACAAGGTTGCTTACATAAACGACTCCATTGGCCTACATCGTGTGGAAAATGGCAGCCACACAGAGTGTGCAGCCAGTTTGCACCTGTACAGTCCCCCTTTCCAGTCCTGCCAGACATTTGACCAGCGGACGGGGCACAGGAACACCGTCAAGATGACCTTCTGGAGCAAAAAGGGCGAGAGGACTCCATTTGAAACCACATTCTCACAAGAGAACAACTAATAGTCACCAAAGGAGGCTCCAGATGAGGAAGACAGTTgtgttgaaatgacaatgttGTAAAATTGATTCAAGGGAAACTGCTTGGGAAGCAAAATGTGGACCTACTATGACTAAGCAACCCATTTAAAAAATCAGGAGCGGGCCGGTTCAAAAGGACAACTCAGTAATTAGAATGGCTTTATCGCTGCCCAGTGTGAGCTTGGCAAATACTGATGAGCACAGGACGAATGCATGAATAGGCTTGGACATGGATTGAATCTGCCTTTTGTTTGCTAGGCCTGAGGAGACCCTTTTCCAATAACAACATTCCTGTCCAGCCACGACCTGTGTAACAACACTTTTGAAAAATTATGGCCCATAGTCAAAGAGCTGAGCTTTGGCATTTTCAAAAAGGGGGGGATATATTGTAATAGTGTTTAAATTTCATATCTCAAGAAAAGGAAAATAGTAAATGATGGAGCATTTTTATAGCTGTATTTACTGTCAATTTAGACCACTCAAAATTGTCTTAACACCTGTTGAAAATTGTGATGATGTAACATTGTTTGTATAATCTAATTAACAAAAAGTTTGTTCCATTTGCATTtggaaaaagaaatgtaaagctttagagttgtgttgtttttaaaagtgctaTGGTTGTAATTTATTTGCAGGGAAGAGAGTGTTTGAATCGGCAAGCTTCCGTGTTACTCCTTAATGTATTCGTACTTAAGTTTTGACCAAGAAAGTCTTTTGTATTATTAGCAGACAATATGTTCAGTTAAAACACATACCTTTTCTCAGGATTTTGGCATATTTTTAATTGTAGCTGTATttatagtgtgtagtttttaCAGCATAGCATAGCACTGTCAAATGCATAAGTGATTTCTGTGATGCAGTAAATGATAAATCTGGCCATAACTGTAGACCATTAAACACCATTACCCTTTcacagaa
>XM_039804192.1
TCTGCTGTCTACCGGCGGGCGGGCTGCAGCTGCCTCCAACATATTTGGAGACTGAGTATCGACAATATTTAAAGACCAAGCAATGACGCAGACTGGCCTATATGATATGAGTACACAAGGAACTTGGTTGATGAGGGTAACGGAAAGTTCAACCTCATGATTCTGTGCTGGGGAGAAGGCCACGGCAGTAGCATCCACGACCACACAGACTCCCATTGTTTCATGAAGCTGCTGCAGGGTCAACTAAAGGAGACGCTGTTTGAGTGGCCGGACAGTAAATCACAAGGAGAAATGGTCCAGAAGTCACAGAGAATTCTCCAAGAAAACAAGGTTGCTTACATAAACGACTCCATTGGCCTACATCGTGTGGAAAATGGCAGCCACACAGAGTGTGCAGCCAGTTTGCACCTGTACAGTCCCCCTTTCCAGTCCTGCCAGACATTTGACCAGCGGACGGGGCACAGGAACACCGTCAAGATGACCTTCTGGAGCAAAAAGGGCGAGAGGACTCCATTTGAAACCACATTCTCACAAGAGAACAACTAATAGTCACCAAAGGAGGCTCCAGATGAGGAAGACAGTTgtgttgaaatgacaatgttGTAAAATTGATTCAAGGGAAACTGCTTGGGAAGCAAAATGTGGACCTACTATGACTAAGCAACCCATTTAAAAAATCAGGAGCGGGCCGGTTCAAAAGGACAACTCAGTAATTAGAATGGCTTTATCGCTGCCCAGTGTGAGCTTGGCAAATACTGATGAGCACAGGACGAATGCATGAATAGGCTTGGACATGGATTGAATCTGCCTTTTGTTTGCTAGGCCTGAGGAGACCCTTTTCCAATAACAACATTCCTGTCCAGCCACGACCTGTGTAACAACACTTTTGAAAAATTATGGCCCATAGTCAAAGAGCTGAGCTTTGGCATTTTCAAAAAGGGGGGGATATATTGTAATAGTGTTTAAATTTCATATCTCAAGAAAAGGAAAATAGTAAATGATGGAGCATTTTTATAGCTGTATTTACTGTCAATTTAGACCACTCAAAATTGTCTTAACACCTGTTGAAAATTGTGATGATGTAACATTGTTTGTATAATCTAATTAACAAAAAGTTTGTTCCATTTGCATTtggaaaaagaaatgtaaagctttagagttgtgttgtttttaaaagtgctaTGGTTGTAATTTATTTGCAGGGAAGAGAGTGTTTGAATCGGCAAGCTTCCGTGTTACTCCTTAATGTATTCGTACTTAAGTTTTGACCAAGAAAGTCTTTTGTATTATTAGCAGACAATATGTTCAGTTAAAACACATACCTTTTCTCAGGATTTTGGCATATTTTTAATTGTAGCTGTATttatagtgtgtagtttttaCAGCATAGCATAGCACTGTCAAATGCATAAGTGATTTCTGTGATGCAGTAAATGATAAATCTGGCCATAACTGTAGACCATTAAACACCATTACCCTTTcacagaa

Function

symbol description
cdo1 Predicted to enable cysteine dioxygenase activity and ferrous iron binding activity. Predicted to be involved in L-cysteine catabolic process. Is expressed in gut; intestinal bulb; lens; liver; and yolk syncytial layer. Orthologous to human CDO1 (cysteine dioxygenase type 1).

NR:

description
PREDICTED: cysteine dioxygenase type 1

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0046439 L-cysteine metabolic process biological_process
GO:0005506 iron ion binding molecular_function
GO:0017172 cysteine dioxygenase activity molecular_function

KEGG:

id description
K00456 CDO1; cysteine dioxygenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804190.1 True 1678 mRNA 0.41 6 25567704 25573107
XM_039804191.1 False 1629 mRNA 0.41 5 25567705 25573107
XM_039804192.1 False 1488 mRNA 0.41 5 25568565 25573107

Neighbor

gene id symbol gene type direction distance location
sema6a sema6a,LOC102790561 coding upstream 122564 25336024 ~ 25445140 (+)
hsd17b4 hsd17b4 coding upstream 308535 25233215 ~ 25259169 (+)
atxn2 atxn2 coding upstream 427916 25107957 ~ 25139788 (+)
ostf1 ostf1 coding upstream 479058 25080307 ~ 25088646 (+)
LOC120560335 LOC104920830,LOC101074081,LOC103362722,LOC101475228,LOC102784348,LOC101160076 coding upstream 544016 25019069 ~ 25023688 (+)
LOC120560598 NA coding downstream 28049 25601156 ~ 25622051 (+)
spef2 LOC104950669 coding downstream 52897 25626004 ~ 25646477 (+)
LOC120560771 ugt3a2,LOC108233592 coding downstream 74008 25647115 ~ 25653156 (+)
LOC120560772 pdxp,LOC102792570 coding downstream 82578 25655685 ~ 25659461 (+)
LOC120560092 LOC101464110,LOC102227132,LOC106956827,LOC106513657,LOC105931341,LOC103374419,LOC101075487 coding downstream 183981 25757088 ~ 25762906 (+)
G64495 NA non-coding upstream 11923 25552939 ~ 25555781 (+)
LOC120560635 NA non-coding upstream 15440 25548023 ~ 25552264 (+)
G64489 NA non-coding upstream 61136 25506164 ~ 25506568 (+)
G64450 NA non-coding upstream 264784 25259716 ~ 25302920 (+)
G64392 NA non-coding upstream 357534 25209924 ~ 25210170 (+)
G64578 NA non-coding downstream 89920 25663027 ~ 25663385 (+)
G64592 NA non-coding downstream 123956 25697063 ~ 25699784 (+)
LOC120560927 NA non-coding downstream 140803 25713910 ~ 25747889 (+)
G64607 NA non-coding downstream 215350 25788457 ~ 25795441 (+)
LOC120560032 NA non-coding downstream 266029 25839136 ~ 25843093 (+)
cdc14b cdc14b,LOC102776968,LOC103141798,LOC106948523 other upstream 730256 24823718 ~ 24837448 (+)
prxl2c aaed1 other upstream 744638 24821314 ~ 24823066 (+)
G64108 NA other upstream 1874413 23692662 ~ 23693291 (+)
LOC120560905 clg12h9orf3,LOC103358904,LOC102294417,LOC101470200,LOC102214270 other upstream 2005419 23487967 ~ 23562285 (+)
G63905 NA other upstream 2637499 22929899 ~ 22930205 (+)
LOC120561182 LOC104948667,LOC104930137,LOC103397628,LOC103366370,LOC107092578,LOC102226292,LOC106956829,LOC106919698,LOC103470079,LOC103141747 other downstream 111857 25684964 ~ 25696576 (+)
LOC120560031 LOC104941040,LOC103357154,LOC102795853 other downstream 341172 25914279 ~ 25915577 (+)
LOC120560359 NA other downstream 352980 25926087 ~ 25928596 (+)
nsd3 whsc1l1 other downstream 786013 26359120 ~ 26383843 (+)
G64814 cldn5,LOC103357131 other downstream 839762 26412869 ~ 26414597 (+)

Expression


Co-expression Network