prkab1b (LOC103353610,LOC101165238)


Basic Information

Item Value
gene id prkab1b
gene name LOC103353610,LOC101165238
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 14437825 ~ 14445152 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804210.1
TCTAttcactaaacacacacaaagacacgcgCACGTACACACAAAAGTCTCCACTAAATGGCGAAAACACACAAAGTACAACAGACCTCCGGAGACTCGAAGAAGAACTAGCTAGTGGtaggagaaaggaaaaagaaagagcgCCGATACCGTGCTCCTTTGTTGTTATTAGTGCGGGACGGTGAGCGCTGCTCCGCCtcatgctaacgttaacgttaacgtcaGTTTTTTCAGTTCGAGAGGGAAACTTCTGCAGTTTCCAAGACACGGAAAACAACAACTAGAAGACACCCAGAAACACCAACCAGATGTACTTGAGAGCAGAGACCTCCGTTTGAAAGGACCGTATCTAAACAAGCCTACACCTGGGAACAGTTCGtGTTTGATGCCAGCGGGATGGGGAACAGCAGCAGTGACCGGTCCAGCGATGGGCAGCGGGACAGGTCCTACAGAGATGGACAACAAGGAGGGAAAGAGGCACGTCCCAACATCCTGCTAGACAGCACCGAGGACGCAGACCTTTTCCAGAGAGAAGATACAAAGGCTCCGCAGGAAATACAGGAATTTCTGGCCTGGCAGCAGGACCTGGAGAGTGATAGCAAAAGTCCAACGCAGGCCAGACCGACTATGTTCAGGTGGCCGGGGGCCGCCAAAGAAGTCTTTGTGTCCGGCTCTTTTAACAACTGGGCCACCAAGATCCCTCTCAACAAAAGTCAAAAAAACTTTGTGGCTATCGTGGACCTGCCAGAGGGAGAGCACCAGTACAAGTTCTGTGTAGACGGTCAGTGGACCTTGGATCCTACTGGGGCTGTGATGACGTCTAAAACTGGCACAGTTAATAATGTCATCCAGGTAAAGTCAAGCGACTTTGAAGTCTTTGATGCCCTCAGGATCGACTCTGAGGATTCTGCAGATATGTCAGACCTGTCCAGTTCCCCTCCCGGCCCCTACCTACAGGAAGCATATGTGATCAAGCCAGAAGACAAGATCAAGCACCCTCCCATCTTACCTCCCCACCTGCTGCAAGTGCTGCTCAACAAGGACACAGGGATCTCTTGTGACCCGACGCTGCTTCCAGAGCCCAACCATGTGATGCTCAATCACCTGTACGCCCTCTCCATCAAGGATGGGGTGATGGTTCTCAGTGCAACGCACCGATACAAAAAGAAGTACGTGACCACTCTTCTCTACAAGCCAATATAATCCACAGAGCCTTTGTCCTGcctcttattttgaaatgccAATAATTCATCTGTTGTTGTACACAGCGGCTGATTGGATTGTTTTGTTAAAATCGGACCTACATATCTTCCTGGtatcaatttaaaagatttgttaaatctttttttttttctaattttaaaaaatattttaaagttaaacTTGCTGCACAATGTTTGTCAATTTATGATCCAACCATAACTCCAACCTAAAGcttccctttaaaaaaaaaaaagaaatgataagTCAGTATCAACCAAAAACTCCCAAGAGACACGA
>XM_039804211.1
GGGCCTATTTGTTGATAAATCACCCAATTTACTGACAGCTGTGTTCTTATTTTAGAACTGAAACTCCGATATCTGTTTTTGAAATCATGTAAGTAGGCCCTAATAGCTTCTAAATCGTCCGACCACAAAAGAGTTGGCGACAATCGGGTTAAAATGTAACTCTCCCTGAGCTCGAGGGCACGAGGCGGAAGAGTTTTTTCAGTTCGAGAGGGAAACTTCTGCAGTTTCCAAGACACGGAAAACAACAACTAGAAGACACCCAGAAACACCAACCAGATGTACTTGAGAGCAGAGACCTCCGTTTGAAAGGACCGTATCTAAACAAGCCTACACCTGGGAACAGTTCGtGTTTGATGCCAGCGGGATGGGGAACAGCAGCAGTGACCGGTCCAGCGATGGGCAGCGGGACAGGTCCTACAGAGATGGACAACAAGGAGGGAAAGAGGCACGTCCCAACATCCTGCTAGACAGCACCGAGGACGCAGACCTTTTCCAGAGAGAAGATACAAAGGCTCCGCAGGAAATACAGGAATTTCTGGCCTGGCAGCAGGACCTGGAGAGTGATAGCAAAAGTCCAACGCAGGCCAGACCGACTATGTTCAGGTGGCCGGGGGCCGCCAAAGAAGTCTTTGTGTCCGGCTCTTTTAACAACTGGGCCACCAAGATCCCTCTCAACAAAAGTCAAAAAAACTTTGTGGCTATCGTGGACCTGCCAGAGGGAGAGCACCAGTACAAGTTCTGTGTAGACGGTCAGTGGACCTTGGATCCTACTGGGGCTGTGATGACGTCTAAAACTGGCACAGTTAATAATGTCATCCAGGTAAAGTCAAGCGACTTTGAAGTCTTTGATGCCCTCAGGATCGACTCTGAGGATTCTGCAGATATGTCAGACCTGTCCAGTTCCCCTCCCGGCCCCTACCTACAGGAAGCATATGTGATCAAGCCAGAAGACAAGATCAAGCACCCTCCCATCTTACCTCCCCACCTGCTGCAAGTGCTGCTCAACAAGGACACAGGGATCTCTTGTGACCCGACGCTGCTTCCAGAGCCCAACCATGTGATGCTCAATCACCTGTACGCCCTCTCCATCAAGGATGGGGTGATGGTTCTCAGTGCAACGCACCGATACAAAAAGAAGTACGTGACCACTCTTCTCTACAAGCCAATATAATCCACAGAGCCTTTGTCCTGcctcttattttgaaatgccAATAATTCATCTGTTGTTGTACACAGCGGCTGATTGGATTGTTTTGTTAAAATCGGACCTACATATCTTCCTGGtatcaatttaaaagatttgttaaatctttttttttttctaattttaaaaaatattttaaagttaaacTTGCTGCACAATGTTTGTCAATTTATGATCCAACCATAACTCCAACCTAAAGcttccctttaaaaaaaaaaaagaaatgataagTCAGTATCAACCAAAAACTCCCAAGAGACACGA

Function

NR:

description
PREDICTED: 5'-AMP-activated protein kinase subunit beta-1-like

GO: NA

KEGG:

id description
K07199 PRKAB; 5'-AMP-activated protein kinase, regulatory beta subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804210.1 True 1500 mRNA 0.47 8 14438024 14445152
XM_039804211.1 False 1468 mRNA 0.46 9 14437825 14445152

Neighbor

gene id symbol gene type direction distance location
msi1b msi1,LOC100704609 coding upstream 8393 14405140 ~ 14429432 (+)
unc119.1 unc119b coding upstream 54598 14377254 ~ 14383227 (+)
idua idua coding upstream 191520 14234278 ~ 14246305 (+)
LOC120560659 LOC103369208,LOC102291259,LOC102215744,LOC101478239 coding upstream 204437 14212239 ~ 14233388 (+)
LOC120560074 NA coding upstream 226121 14198755 ~ 14211704 (+)
pla2g1b NA coding downstream 5699 14450851 ~ 14454246 (+)
cfap77 NA coding downstream 103527 14548679 ~ 14555480 (+)
barhl1a NA coding downstream 111237 14556389 ~ 14563699 (+)
LOC120560602 LOC108248102,LOC106527805,LOC101064502,LOC101174676 coding downstream 181469 14626621 ~ 14642212 (+)
LOC120561189 LOC102300215,LOC108165969 coding downstream 201575 14646727 ~ 14666265 (+)
G61450 NA non-coding upstream 33653 14403633 ~ 14404172 (+)
G61449 NA non-coding upstream 35063 14402055 ~ 14402762 (+)
G61448 NA non-coding upstream 35944 14401231 ~ 14401881 (+)
G61431 rnf10,LOC102784202 non-coding upstream 69337 14365232 ~ 14368488 (+)
G61391 NA non-coding upstream 108078 14328180 ~ 14329747 (+)
LOC120561034 NA non-coding downstream 19851 14465003 ~ 14465725 (+)
LOC120561032 NA non-coding downstream 24045 14469197 ~ 14472189 (+)
LOC120560938 NA non-coding downstream 52629 14497781 ~ 14499057 (+)
G61468 NA non-coding downstream 54028 14499180 ~ 14499434 (+)
G61513 NA non-coding downstream 230985 14676137 ~ 14677372 (+)
LOC120560925 NA other upstream 3228 14431330 ~ 14434597 (+)
c6h12orf43 NA other upstream 45242 14389471 ~ 14392583 (+)
G61390 crybb2,LOC108234953,LOC100703162 other upstream 118319 14317539 ~ 14319506 (+)
G61383 NA other upstream 153954 14283417 ~ 14283871 (+)
LOC120560400 tmem150a,LOC106585116 other upstream 156054 14252256 ~ 14281771 (+)
G61514 surf4,LOC103397973,LOC102307728,LOC100699423,LOC101479701,LOC101465012 other downstream 254373 14699525 ~ 14794602 (+)
LOC120561401 NA other downstream 310298 14755450 ~ 14762549 (+)
surf4l surf4,LOC103397973,LOC102307728,LOC100699423,LOC101479701,LOC101465012 other downstream 329361 14774513 ~ 14795943 (+)
cntrl NA other downstream 483221 14928373 ~ 14979797 (+)
G61535 LOC103368073 other downstream 633722 15078874 ~ 15083448 (+)

Expression


Co-expression Network