tspan36 (LOC104956296)


Basic Information

Item Value
gene id tspan36
gene name LOC104956296
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 22826626 ~ 22835070 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804277.1
GTCACTGCAGCCAGACAGACCGAGAAAACTTGTGACCAAAACAGCAGGAGAACCAGCTCTGCGATACCACAAAACTGTACCGCAGCGACTCCACAGTCCTTCTTCAATCCTTTCATCACCGCCAGACAAGATGGACTGCGGGATATTCACCTCCAAgaccgtcctcctcctcctcagcttgATATTTTGGGCTGCAGGAGCAGCGTTGGCCTACGTCGGAGCCTACGTGATCAAGAGCTATGACAACTTTGACAGTTTCATTCAAGACAAGTACACTTTGGTTCCAGCAGCTATCATCATCGCCATCAGCGTGGTGATGTTCATTTTTGGTCTGGTGGGATGCTGCGCCACAATCCGGGAGTCCAAAGTCGGCCTTAGCTTTTTCTTTCTGATCATCGTGGGGATGTTTGCAGCTGAAGTGGCTGCTCTGGTATTTAGCTTCATCTACCAAGGCAAGATAAACGCAGACCTGGAGCGCTCTATGAATGAAGTCTTCATAAAGTATGATGGACAGGACCCAGAGACCAAAGCTGTTGACTATCTGCAGGCTCAGTTGCAGTGCTGTGGTGTCATGAATTACACCAGCTGGTCCAACACTACCTGGTTTAGAAGCCACAACAACACAGTGCCTCTGTCCTGCTGTAAAAACAGTACCACACAGTGCACTGGCAGACTGGACCAACCAGACCTGCTTAACATACAGGGTTGTGAGGCGAAGCTGGATCGCCTCCTACAGGATGTGTTGGGTTACGCCATGCTGGTCATTCTGGCCTTCGCCATCATCAAGTTCTTTGGGATGCTGAGTGTATGTGTGATCACCTGTAAAAGTGGCAGCCAGAGGAGCGGCTACCAGCCTCTGTATGCCTGAATCACTTCCTGCAACCACCTACCACCTCCTCATTTTGCTTGTCTAGGTTAGCTGACCACTCACTCAGCAGTGTACAAGTTTTATTTAGATAATGGCATATAAAGTATACACAAGTGGCAGACCTTGTCCCAATCTAAAGTGGATCTTACCAGAGCATTCCTCCACATATGAAATCAGCACAAATGTTCCTCTGACTTGTTAAATACTTTTGCTGAATGTTTATGATAACGTTTTCCATATGTTTGAGTAGCCAAAGGTTTCTGTACTGTCTGACTTCAAACTATATTTTAAGCTTTATTGATTGTAAACGAAAGGACAGCGGTTTAATGCCTATATATataatgcatatatatatatatatatatatatatatatatatatatatatatatataagttttaTGGTCAGTTAACTGTATTAAATTAAGCTACAGTTCTACATAGATAGACTTtggttgtgtttatgtgtttctaaattaaaaaagtgaacATTTCACAATAATTTGGAGTTCAGTCCAGTTATATCACATTATTGTATtttactgtttgtgtttttaacattttgtaatttaccatattaataaatatttatagATAGGACATGCTGACAGTTGCTCACATATTATTATGTGTTATTATGAAACTAGGAGGACACAGCAAACAGTTGCAGAGTGTACATTCAGAGCACAACATTAAACATGCCCCACGTCATGTCTTACCTCCTGACTCTGCTGATAAAGAGGCCCTTAGTGCCGTACATACAGAAGATAGGAGTGTTCATCTTACATAAGTCTTGTCAGTGTTCATAAAGATAACTgagaattcaattcaattttatttatggtGTCAAATCCTAACAatagttatctcaggacactttccaaatagagtaggtctagacaacACTCtacaatttacaaagacccaacaatttcacCACCAAAGAGCAAGcaacttccttttaacaggcagaaacttCGGACCGACCCTGAGTCTTGGTGAGCGGCCATCTGCCACTGACGGTTGGGAATGTAAACTTGTGTCCAGGTTCATTATAGTCATCAATCATCACAGAGCACAGATTAAAGGATAAATCACCTGTTGATTTTAACTAACCTAATCCAttagtttaattaaaatgtaaagtatCTCTTGACCTTTCTTTTTATTAATGATACAGTCAAACCAACCATGTATCAAGCTAATTGTTTCCCCTTCTGCCAGTCCCAACCTCTGTAATGAAAAAATATCCATTAGCATCAACTGCAACACTTTTGTTAGTGTAGTTGCAGTAACAAAGAAAGACCTGCAGGGGGTGTAAAAGAACCTGCTCTGAATTAAAGGTCTAAACCAGCAGTTGTGGCGGTGAAGGGaccccaaaaaaacaacttttaatatTTACTCGCTGCAGAGGTAGTAAATTAGTTATAATATAAAGGACACAATGCATGAATGTAGAAAGTCTGTTTTCAAACAATGGaataaatatgatttttttttatgttttaaa

Function

NR:

description
tetraspanin-3-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804277.1 True 2377 mRNA 0.40 7 22826626 22835070

Neighbor

gene id symbol gene type direction distance location
smarcad1a smarcad1 coding upstream 15234 22791538 ~ 22811392 (+)
atoh1a NA coding upstream 65789 22758111 ~ 22760837 (+)
grid2 grid2,LOC102784241 coding upstream 71876 22123035 ~ 22754750 (+)
ccser1 ccser1,LOC102783788 coding upstream 705311 21991353 ~ 22121315 (+)
trim36 trim36 coding upstream 837044 21955578 ~ 21989582 (+)
mapk4 mapk4 coding downstream 5432 22840502 ~ 22861873 (+)
me2 me2 coding downstream 27514 22862584 ~ 22883874 (+)
elac1 elac1 coding downstream 49518 22884588 ~ 22891019 (+)
ndufaf2 ndufaf2 coding downstream 422191 23257261 ~ 23273702 (+)
LOC120560302 zswim6 coding downstream 448009 23283079 ~ 23330548 (+)
G63792 NA non-coding upstream 676502 22131884 ~ 22150124 (+)
G63715 NA non-coding upstream 950939 21875445 ~ 21875687 (+)
G63714 NA non-coding upstream 981488 21844832 ~ 21845138 (+)
LOC120560273 NA non-coding upstream 1205915 21608823 ~ 21620711 (+)
G63872 NA non-coding downstream 68965 22904035 ~ 22905966 (+)
G63914 NA non-coding downstream 152111 22987181 ~ 22988040 (+)
LOC120560300 NA non-coding downstream 384780 23219850 ~ 23245368 (+)
G63976 smim15,LOC106580593,LOC103398561 non-coding downstream 439850 23274920 ~ 23281109 (+)
G64026 NA non-coding downstream 595620 23430690 ~ 23432473 (+)
LOC120560787 NA other upstream 1227337 21588876 ~ 21599289 (+)
G63480 rbm19 other upstream 2148710 20676417 ~ 20677916 (+)
wdr31 wdr31,LOC102796061 other upstream 2336040 20473651 ~ 20490586 (+)
vps13a vps13a other upstream 2384533 20400947 ~ 20442093 (+)
c6h2orf68 c21h2orf68,c9h2orf68,LOC104941594,LOC103363183,LOC104920309 other upstream 3063102 19759596 ~ 19763524 (+)
G63905 NA other downstream 94829 22929899 ~ 22930205 (+)
LOC120560905 clg12h9orf3,LOC103358904,LOC102294417,LOC101470200,LOC102214270 other downstream 652897 23487967 ~ 23562285 (+)
G64108 NA other downstream 857592 23692662 ~ 23693291 (+)
prxl2c aaed1 other downstream 1986244 24821314 ~ 24823066 (+)
cdc14b cdc14b,LOC102776968,LOC103141798,LOC106948523 other downstream 1988648 24823718 ~ 24837448 (+)

Expression


Co-expression Network