LOC120561251


Basic Information

Item Value
gene id LOC120561251
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 11351854 ~ 11354906 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804289.1
agtagtatatgtgagagagtatagtagtgtatgtgagagagtatagtagtgtgtgtgagagagtttgatTGAAACGGAAGGGAGTTTGATTGAAACGGAAGGGAGTTTGATTACTCAGCTCCTGATTGGTTGACAAAGAAGAAGCGGTATTTGACGGTCAAATTCCGGCACTGTCATTATAATAGTTTGGCTGAAGTGGAGCTGTAATGGATAGAGAGAGGCTAACTGAAGCTGTGGGTcttctaaataataatttaggaAATGGTGAGCTATTGTCAACGATGTCTCGACAATTAAATTAAGTCCAACAGAGCTCTGATTCGGAGATGCAGAGATTATTCAGGGGTGGAACTGCAAATCCAGTCAGACCTGGCTCCAGgctagcactgctacttctaggTAGCTCAATGCAACACGGAGGACCCCGTTACCAGACGAGACAGCGTTTCGGTGGATCGTCGTCGAAATCCAGGAAGAGATTATCTGGCCAATGCTGGGTGTCTAAGGCCTTTGAAACGCATAGAAGACAAAGATCTCTTGGTGGAGGATATCATCATGTTTCAGCTGGTTCATCGAGTTAGTGGAGCACTTCAAAGgTTCAGGGAGGGGATGAAGACCCTTGGTGTTCTTGATGCAATAAGAATGCACCCAGATGCTTTCAGACTGCTGTTTTGTCACGGGCCATCCCCACTCACAGCGGATGTACTAGAACTGTCAGCAGTGGGCAGGAACAAAAGAAGGGCAGAGGAATGTGTGGTTGCATTTTGGAGGGACTACCTGCTGGATGTTGAGGcGCAAGAGGGACCCTTGCAACTTGGGGGTATCCTGGCCTTTGCGACGGGAGCAAACGATATTCCACCCCTGGGCTTCTCTCCACTACCTTCAGTGGTTTTTCTCCATGAGCTGCCCCTCAGACAAGGCCGTCATTTACCCACTGCAAACCCATGCATTAACTGCCTGCGGTTGCCAGTCCTGAAAAAATTCGAGGATTTTAAGGAAACTATggattttgcattaaaaaacacTCAGGGATTTGGTCAGGAATGACTTCCAAGAACTCCttaatatacattattaaaatCTGTTGCCTGTTGAACTTGACTAAATTGAAGAGGCATCGTTGTCAATAACTCACCATTTcctaatacattattaatgtcttgtttaaacaattaaaaatggaaTAATCATC
>XM_039804290.1
atgcatcacctaatttcatcatcacatacaggcctggcctccagtaaagaacagtttgttgaatatatctaatcttgtgttgttcatactatacaatgatttattacagATTATCTGGCCAATGCTGGGTGTCTAAGGCCTTTGAAACGCATAGAAGACAAAGATCTCTTGGTGGAGGATATCATCATGTTTCAGCTGGTTCATCGAGTTAGTGGAGCACTTCAAAGgTTCAGGGAGGGGATGAAGACCCTTGGTGTTCTTGATGCAATAAGAATGCACCCAGATGCTTTCAGACTGCTGTTTTGTCACGGGCCATCCCCACTCACAGCGGATGTACTAGAACTGTCAGCAGTGGGCAGGAACAAAAGAAGGGCAGAGGAATGTGTGGTTGCATTTTGGAGGGACTACCTGCTGGATGTTGAGGcGCAAGAGGGACCCTTGCAACTTGGGGGTATCCTGGCCTTTGCGACGGGAGCAAACGATATTCCACCCCTGGGCTTCTCTCCACTACCTTCAGTGGTTTTTCTCCATGAGCTGCCCCTCAGACAAGGCCGTCATTTACCCACTGCAAACCCATGCATTAACTGCCTGCGGTTGCCAGTCCTGAAAAAATTCGAGGATTTTAAGGAAACTATggattttgcattaaaaaacacTCAGGGATTTGGTCAGGAATGACTTCCAAGAACTCCttaatatacattattaaaatCTGTTGCCTGTTGAACTTGACTAAATTGAAGAGGCATCGTTGTCAATAACTCACCATTTcctaatacattattaatgtcttgtttaaacaattaaaaatggaaTAATCATC

Function

GO:

id name namespace
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804289.1 True 1192 mRNA 0.45 4 11351854 11354906
XM_039804290.1 False 823 mRNA 0.43 3 11351854 11353697

Neighbor

gene id symbol gene type direction distance location
sdf2l1 sdf2l1,LOC106531766,LOC106570867 coding downstream 182527 11160449 ~ 11169327 (-)
top3b top3b coding downstream 259892 10986105 ~ 11091962 (-)
ppm1f ppm1f coding downstream 383650 10807831 ~ 10968204 (-)
tm2d2 tm2d2 coding downstream 647161 10637048 ~ 10704693 (-)
hdr NA coding downstream 1241385 10089296 ~ 10110469 (-)
npdc1b npdc1 coding upstream 253713 11608619 ~ 11639438 (-)
niban2b LOC106585213,LOC107560233,LOC107715759 coding upstream 286896 11641802 ~ 11715948 (-)
noxa1 LOC103359690 coding upstream 726593 12081499 ~ 12116241 (-)
man1b1b LOC103359688 coding upstream 803727 12158633 ~ 12220357 (-)
LOC120560512 NA coding upstream 898261 12253167 ~ 12293788 (-)
G60721 NA non-coding downstream 143941 11207608 ~ 11207913 (-)
LOC120560099 NA non-coding downstream 228946 11122553 ~ 11122908 (-)
G60683 NA non-coding downstream 231052 11119850 ~ 11120802 (-)
G60680 NA non-coding downstream 239195 11107551 ~ 11112659 (-)
G60655 NA non-coding downstream 371098 10980417 ~ 10980756 (-)
G60805 NA non-coding upstream 136415 11491321 ~ 11492157 (-)
G60813 NA non-coding upstream 193154 11548060 ~ 11550747 (-)
G60817 fut7,LOC103353858 non-coding upstream 217046 11571952 ~ 11576716 (-)
G60857 NA non-coding upstream 368943 11723849 ~ 11724069 (-)
G60858 LOC103141940,LOC106938081,LOC103353854 non-coding upstream 373625 11728531 ~ 11766055 (-)
G60715 NA other downstream 162113 11189142 ~ 11189741 (-)
unc5db unc5d other downstream 832887 10122152 ~ 10518967 (-)
tacr1a tacr1,LOC102799894,LOC100703444,LOC102196095 other downstream 2624411 8643403 ~ 8727443 (-)
G60145 NA other downstream 2949288 8401022 ~ 8402566 (-)
anapc7 anapc7 other downstream 3464429 7877399 ~ 7887425 (-)
LOC120561001 whrn,LOC102797690 other upstream 546744 11901650 ~ 12061646 (-)
LOC120561038 LOC102778062,LOC101486272,LOC102199534,LOC108245630 other upstream 938801 12293707 ~ 12555285 (-)
G61264 NA other upstream 2234133 13589039 ~ 13589332 (-)
si:ch73-138n13.1 LOC102794857,LOC107084631 other upstream 2973245 14328151 ~ 14364326 (-)
trnaa-agc_14 NA other upstream 3584069 14938975 ~ 14939047 (-)

Expression


Co-expression Network