LOC120561264 (rhobtb2)


Basic Information

Item Value
gene id LOC120561264
gene name rhobtb2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 37920192 ~ 37934852 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804301.1
cacgtGGGAGACTGCAGGCCAGTCTATCCAGGCTGCTTAGGAGCTGTGGAATGAGATTTGTGCGACTTTAAAGTGGATCAGTGTTTTGTAATGAATGGCTTGTTTTGGTCGGAGCCAGCCTATTATTAGCTCCACGCTCCGGAGGCCTTGCTTGCCTTCACTGAGAGGAGAGGACGGCCCGGGCTGCAGCTCTGCATCGCACCGGCAGGCTTCACATCACCGCCTATCCGTATTTCTGGCAATGCAATCGGACTAATCGCGCTGATCCAGCGGGGGGCGGGGGCCGGTTTGCTGGAACATCTGCGGTCCTCCTCCGCCTCTTCCCCCCCCTCCAACACTTGTTCCCTTTGCCTCGAAGATGAAGTTAAACGCGAGCCGCCGTCAGGTGCAAGCCGCTTCCGATGGAGCCCTGCTCTCTGTCTCGATCATCGACCAACCCGATGCAGCACTTCCCTATGTTGAGGTCCCAGCTGACAGATTCTGATATGGACTATGAGAGGCCAAACGTTGAAACTATCAAGTGTGTGGTGGTGGGAGACAATGCAGTCGGAAAGACCCGCCTTATCTGCGCCCGGGCCTGCAACGCCACGCTGACTCAGTACCAGTTACTCGCCACACATGTGCCCACAGTCTGGGCAATCGACCAGTACAGAGTATGCCAGGAGGTATTAGAGCGCTCCAGAGATGTGGTGGATGATGTCAGCGTGTCCCTTCGTCTCTGGGATACTTTTGGAGACCATCATAAGGACCGGCGTTTTGCATACGGCAGGTCTGATGTGGTGGTGCTGTGCTTCTCAATCGCCAACCCCAACTCTCTATACCATGTGAAGACCATGTGGTACCCTGAGATCAAGCACTTCTGCCCCCGCGCTCCTGTCATCCTGGTGGGCTGTCAGCTGGACCTGCGCTATGCAGACCTGGAGGCAGTGAACAGGGCACGGAGACCTCTAGCTAGACCGATTAAATCTAATGAGATTCTTCCTCCAGAGAGAGGCCGGGAGGTGGCCAAAGAGTTGGGGGTGCCATATTATGAAACCAGTGTTGTTGCTCAATTTGGAGTCAAGGACGTCTTTGACAATGCTATCCGAGCTGCGCTGATCTCACGCCGACACCTGCAGTTTTGGAAATCTCACCTCAGAAATGTCCAGCGGCCTCTCCTTCAGGCGCCCTTCCTGCCACCGAAACCTCCCCCACCAATAATCACTGTGCCTCCTCCGCCAACCACCACGGAGGAGCATCCAGTCGGTCTCCTGGAGGACCCGCACTGTGCCGACGTCATCCTGGTGCTGCAGGAGCGACAGAAAATCTTTGCACACAAGATATACTTGGCGACATCCTCTTCAAAGTTCTACGACCTCTTTATCATGGACACGCGCAACGAGGAGACTGAAAGGCCGTCTCGGGGCCCTCTCTCCGGCAGGGAGCTGCTGATGCGTGCTGCTAGCTTCGATGTTTGCGAAAGCAGTGACGACGGGGACAGGGCCAACCTGAGGGCCTGCACTAGTGACGGGACTCTGAAAGACTCTGAGGGGGCCCGACGGGGCAGAGTGCTCTCTTCGTGGAGCCGAGCCTTCATCAGCATCCAGGAGGAGGTGGTAGATGACCCTGTCACGTACAGCCCCAGGCCCATCACTGTCGTGCACATGGACCAGTCCATGCAGCTCGGACCTTTCAGATCAGTGCTTCGCTACCTGTACACAGGTCAGCTGGACGAGAATGAGAAAGAGCtaatgcacattgcacacattgCTGAGCTGCTGGAGGTCTTTGATCTGCGCATGATGGTGGCAAATGTGCTTAACAATGAAGCCTTCATGAACCAAGAAATCACCAAAGCCTTCCATGTACGGCGCACAAACAGAGTCAAAGAATGCTTGGCCAAAGGCACGTTTTCTGATGTAGTATTCAAGCTTGATGACGGCACCATCATGGCCCACAAGCCTTTACTCATCTCGAGTTGTGATTGGATGGCAGCTATGTTTGGTGGGCCTTTTGTGGAGAGCTGCACCAAAGAGGTGTTGTTTCCAAACACAACTCGCAGCTGTATGAGAGCTGTGCTAGAATATCTCTACACGGGGCGGTTTTGTTCTCGGTCTGATCTGGATGCAATGGAGCTTATTGTCCTTGCCAATCGTCTGTGCCTCCCCCATCTGGTTGCGCTTACAGAGCTCTACACAGTAACAGTGTTGACGGAGGCAGCGATGATGGGGGCCGACATTGATGGAGACGTGCTGGTGTACTTGGATATGGCTCAGTTCCACGGCGCCCAACAGCTCACTGGCTGGTGTCTTCACCACATCTGCACCAACTACAACAGTGTCTGCCgcaagtttaccagagagatgAAGGCCAAATctacagAGAACCAAGATTACTTTGAGAAACATCGCTGGCCACCTGTGTGGTATCTGAAAGAGGATGACCACTACCAAAGAGCACGCAAAGAGCGCGACAAGGAGGACTACCTGTACCAGAGACGGCAATGTAAACGCAAGTGGCTCTTCTGGAACATTCCTTCCTCCCCTAACTCAAACTCTCCTTCTTCTGGTTCATCCGCTGTCATCTGACCCAGCGGTAAGGCCAGGTCCACACTGATGCACTTCAGTGTGGTGGTGGCGAGTTGTTAAAGATACAAAAGAAGGTTAACACTGCTGGCTAGGTACGCCCCAATTATTCAGGCACTCAGTCTCTCGTCCTGTTTGTTTGCCGCTGCAGTCAAACAGCACTCCTCCAGGTCTGCACGGTCAGCTCTATCTGGCAGTTAAAGTAATTGTTCCTTAGATTTTTAGCTTGGTGTACAAGAACCTCAGTGGTATGAACTTCACTGACATACACATATTGATGGTTGTATGTTCCACTGAGTTTTTAAGTTTCAAATTTATAGGACTCTGCTGGCACAGAACTTTCCACCTGTGATCGTAATTATCATCAATTAACCTGAAGTGATTACCAAGTGCTGCTTATCAGCTGCAACAACCAGCAACTCAACACACTCAACTACTCCGTCTCAGAGATATAACACTTTGCCCTTAAGTGTTTGTACAATCTATCTACCAaactgtgtgtacagtatgatCTTATAAACAGGATGCAACGATAGTATGCCCTGCCAGGAATCCATTATTGAAGTCGCGTTGAACTCTAACCTGCTGATTATGATCGTGTAAGCATAAAGGAAAATGTTGTCAAGTTCCAC

Function

symbol description
rhobtb2 Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Predicted to be involved in several processes, including cytoskeleton organization; engulfment of apoptotic cell; and regulation of cell shape. Predicted to be located in endosome membrane. Predicted to be active in several cellular components, including cell cortex; cytoplasmic vesicle; and cytoskeleton. Implicated in developmental and epileptic encephalopathy.

NR:

description
PREDICTED: rho-related BTB domain-containing protein 2 isoform X2

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07868 RHOBTB1_2; Rho-related BTB domain-containing protein 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804301.1 True 3196 mRNA 0.52 10 37920192 37934852

Neighbor

gene id symbol gene type direction distance location
LOC120559987 NA coding downstream 8957 37826890 ~ 37911235 (-)
egr3 egr3 coding downstream 102816 37812922 ~ 37817376 (-)
bin3 bin3 coding downstream 112512 37762546 ~ 37807680 (-)
ubl4a ubl4a,LOC101469798,LOC102296658 coding downstream 212056 37700498 ~ 37708136 (-)
si:dkey-32e23.4 LOC103362318 coding downstream 219904 37685932 ~ 37700288 (-)
slc25a37 slc25a37,LOC103371456,LOC107093885,LOC102799379 coding upstream 182286 38117138 ~ 38159292 (-)
entpd4 entpd4 coding upstream 245427 38180279 ~ 38200948 (-)
abhd17b abhd17b,LOC102776450 coding upstream 273591 38208443 ~ 38247605 (-)
inpp5l LOC104961210,LOC103357656,LOC106585609 coding upstream 449847 38384699 ~ 38452066 (-)
trnaf-gaa_5 NA coding upstream 491849 38426701 ~ 38426773 (-)
G67550 nfu1,LOC101170349,LOC101072203,LOC100703913,LOC103362311,LOC107393744 non-coding downstream 475654 37439315 ~ 37444538 (-)
G67521 NA non-coding downstream 589072 37330638 ~ 37331120 (-)
G67486 NA non-coding downstream 812733 37102992 ~ 37107459 (-)
G67475 NA non-coding downstream 821661 37058238 ~ 37098531 (-)
G67409 NA non-coding downstream 1142057 36777625 ~ 36778135 (-)
G67681 NA non-coding upstream 5029 37939881 ~ 37940295 (-)
G67687 NA non-coding upstream 54380 37989232 ~ 37989542 (-)
G67861 NA non-coding upstream 180394 38115246 ~ 38116233 (-)
G67882 NA non-coding upstream 211144 38145996 ~ 38146799 (-)
G67883 NA non-coding upstream 240873 38175725 ~ 38175961 (-)
G67577 NA other downstream 365425 37535859 ~ 37554767 (-)
G67523 NA other downstream 575109 37344461 ~ 37345083 (-)
adrb3a adgra2,LOC104963277 other downstream 593791 37229742 ~ 37326401 (-)
G67483 pdlim2,LOC104963286,LOC103470528,LOC100702294 other downstream 768546 37098792 ~ 37151646 (-)
arrdc3a arrdc3 other downstream 892399 36971161 ~ 37027793 (-)
LOC120560036 NA other upstream 401236 38336088 ~ 38344796 (-)
LOC120560826 pitpnb,LOC104952320 other upstream 1475387 39410239 ~ 39461568 (-)
G68717 NA other upstream 2000520 39935372 ~ 39935846 (-)
LOC120560061 NA other upstream 2065154 40000006 ~ 40026743 (-)
ppp2r2aa LOC104921711,LOC103356615,LOC108236503,LOC104961741,LOC106520125 other upstream 2378517 40313369 ~ 40330695 (-)

Expression


Co-expression Network