vdac3 (vdac3)


Basic Information

Item Value
gene id vdac3
gene name vdac3
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 26543026 ~ 26553731 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804321.1
CCCTCGGCCGGAGGTCTGACTCGCGCATGCCcagtgtgtttgtctctgcttTCTCCTTCACTGTGCCTCGCTGCAGCGAACAGCGTCGTTAAACTCTGCAAGCTCCGCCCCATAAACAAAGACATGGCAGAGAAAGGAGTGGGGTGTGAGGTGCAGCAGGACAAGACAGGAAAAGGCGAAAAGGCAGACAACAAAGGCCACTGTGTGACATGTCAGCACCACGCACCTAAGGGACATGGCACAATGGCCGTCCCTCCTTCATACTCAGACTTGGGGAAATCTGCCAAAGACATCTTCAACAAGGGCTTTGgatATGGAATTCTAAAGCTGGATGTTAAGACCAAGTCCCAGAGTGGTGTTATgGAGTTTGCCACCTCCGGCTCCAACAACACTGACACAGGAAAGTCAGGAGGCCACCTGGAGACCAAGTACAAATTGAATGAGCTGGGCCTCAACTTCAACCAGAAATGGAACACAGACAACACTCTCACCACAGAAATCACCATGGAGGACCAGCTGGCTAAAGGCCTGAAGCTCGGTTTGGATGCGTCATTTGTGCCCAACACTGGCAAGAAGAGCGCCAAACTGAAGTCCGGCTACAAATGTGAGTTTGTAAATGTTGGCTGTGACCTGGACTTCGACATGTCCGGTCCCACTCTCCACGGAGCTGCTGTGCTGGGCTACGAGGGCTGGCTGGCGGGTTACCAGTTGGCTTTTGACACAGCCAAATCTAAACTGACCCAGAACAACTTCGCCCTTGGATACAAGGCCGGTGACTTCCAGCTTCACACCAACGTAAATGACGGCACAGAGTTCGGTGGCTCCATTTACCAAAAGGTGAACAGCAACTTAGAGACGGCAGTCCACCTGGCCTGGACAGCTGGCAGCAACAACACAAGCTTTGGAATTGGAGCCAAATACCAGCTGGATAAGGATGCCTCCCTGTCTACCAAAGTTAACAATGCCTGCCTCGTTGGAGTTGGATACACGCAAACCCTCAGGCCAGGAGTGAAGCTCACCCTCTCTGGGTTGATTGACGGGAAGAACATGAACGGCGGCGGACACAAAGTCGGCTTGGGTTTCGAGCTGGAAGCGTAAAGATTCAGCAAGAGGACAGAcaagaagagagaagagcaaCACAAGAGAAGAATAAAGAGCCCAAATGTGAGAACACGGTTAAGGTCGACCCAGCGACACAAACACATCTTCCCTCTGAGTcctacacacatatgcacacgcatacacacattcGTTGGCCTTATCCCTGAAACCCAGAGCAGCCTCCAAGACCTCTggcactgtagttttaaaaGAGTCAAGAAATTTCTTGTGTTGGTTACTTTTaaattttacattatttacaacTCCCACAACCAACCTTTGAGCAGATATTATCAGAATACAACAGACTTGTCAACAGGTAATTCATGCAAAAGCCCTGTTCTCCAAAACATTTGCTGCTTACGACCAGTTTGACCAGACAAAGTGCACTTCCAACAGAGCATTTGTGTCTTAAACAATCGGTTTTCTTcctgaaaaaaagatttgaagcaCCTTCTTATTTTGACTGTCTGgtcagcttgtttttttttgttcagatATACTCTGGGTTTAAGACATTATAAGATTAATAGAGGATGCttgttttggtatttttttgtttttcaaggcTAGAAGGAgtttttttgacttttcattGTCCCATTGACAAGTACAGTGACTGTAAACAGATGCAATAAAAGCTGGAGAGAATTAAGCAGAAAAAAGACAGAGTGGCTGATCCTTCTCAGAGTGAGTGGACTTTAATTTCAGCATTAGACCTCAGTAACACAGTTATACTGTGAACCCTCAGTTGCCTAAATGTCTATTTTTCAGGTCCTGTTTGTTAAAAGGGCTGACGGTAATTTGAGACTCTGTGTCACCTCTTTGTCTTGTCTCATTTTGTGTCCTGTACATGTTCAACCTTTACCACTACATTTCACTTTATCTGTGCTGTGCTTTGTATAGGAGATCTAGTCAACAGTTAGGACCTCAAACTGATTTTATTGAATTAATGGAATAAAGAATGTTAAACACTA
>XM_039804322.1
CCCTCGGCCGGAGGTCTGACTCGCGCATGCCcagtgtgtttgtctctgcttTCTCCTTCACTGTGCCTCGCTGCAGCGAACAGCGTCGTTAAACTCTGCAAGCTCCGCCCCATAAACAAAGACATGGCAGAGAAAGGAGTGGGGTGTGAGGTGCAGCAGGACAAGACAGGAAAAGGCGAAAAGGCAGACAACAAAGGCCACTGTGTGACATGTCAGCACCACGCACCTAAGGGACATGGCACAATGGCCGTCCCTCCTTCATACTCAGACTTGGGGAAATCTGCCAAAGACATCTTCAACAAGGGCTTTGgatATGGAATTCTAAAGCTGGATGTTAAGACCAAGTCCCAGAGTGGTGTTGAGTTTGCCACCTCCGGCTCCAACAACACTGACACAGGAAAGTCAGGAGGCCACCTGGAGACCAAGTACAAATTGAATGAGCTGGGCCTCAACTTCAACCAGAAATGGAACACAGACAACACTCTCACCACAGAAATCACCATGGAGGACCAGCTGGCTAAAGGCCTGAAGCTCGGTTTGGATGCGTCATTTGTGCCCAACACTGGCAAGAAGAGCGCCAAACTGAAGTCCGGCTACAAATGTGAGTTTGTAAATGTTGGCTGTGACCTGGACTTCGACATGTCCGGTCCCACTCTCCACGGAGCTGCTGTGCTGGGCTACGAGGGCTGGCTGGCGGGTTACCAGTTGGCTTTTGACACAGCCAAATCTAAACTGACCCAGAACAACTTCGCCCTTGGATACAAGGCCGGTGACTTCCAGCTTCACACCAACGTAAATGACGGCACAGAGTTCGGTGGCTCCATTTACCAAAAGGTGAACAGCAACTTAGAGACGGCAGTCCACCTGGCCTGGACAGCTGGCAGCAACAACACAAGCTTTGGAATTGGAGCCAAATACCAGCTGGATAAGGATGCCTCCCTGTCTACCAAAGTTAACAATGCCTGCCTCGTTGGAGTTGGATACACGCAAACCCTCAGGCCAGGAGTGAAGCTCACCCTCTCTGGGTTGATTGACGGGAAGAACATGAACGGCGGCGGACACAAAGTCGGCTTGGGTTTCGAGCTGGAAGCGTAAAGATTCAGCAAGAGGACAGAcaagaagagagaagagcaaCACAAGAGAAGAATAAAGAGCCCAAATGTGAGAACACGGTTAAGGTCGACCCAGCGACACAAACACATCTTCCCTCTGAGTcctacacacatatgcacacgcatacacacattcGTTGGCCTTATCCCTGAAACCCAGAGCAGCCTCCAAGACCTCTggcactgtagttttaaaaGAGTCAAGAAATTTCTTGTGTTGGTTACTTTTaaattttacattatttacaacTCCCACAACCAACCTTTGAGCAGATATTATCAGAATACAACAGACTTGTCAACAGGTAATTCATGCAAAAGCCCTGTTCTCCAAAACATTTGCTGCTTACGACCAGTTTGACCAGACAAAGTGCACTTCCAACAGAGCATTTGTGTCTTAAACAATCGGTTTTCTTcctgaaaaaaagatttgaagcaCCTTCTTATTTTGACTGTCTGgtcagcttgtttttttttgttcagatATACTCTGGGTTTAAGACATTATAAGATTAATAGAGGATGCttgttttggtatttttttgtttttcaaggcTAGAAGGAgtttttttgacttttcattGTCCCATTGACAAGTACAGTGACTGTAAACAGATGCAATAAAAGCTGGAGAGAATTAAGCAGAAAAAAGACAGAGTGGCTGATCCTTCTCAGAGTGAGTGGACTTTAATTTCAGCATTAGACCTCAGTAACACAGTTATACTGTGAACCCTCAGTTGCCTAAATGTCTATTTTTCAGGTCCTGTTTGTTAAAAGGGCTGACGGTAATTTGAGACTCTGTGTCACCTCTTTGTCTTGTCTCATTTTGTGTCCTGTACATGTTCAACCTTTACCACTACATTTCACTTTATCTGTGCTGTGCTTTGTATAGGAGATCTAGTCAACAGTTAGGACCTCAAACTGATTTTATTGAATTAATGGAATAAAGAATGTTAAACACTA
>XM_039804323.1
CCCTCGGCCGGAGGTCTGACTCGCGCATGCCcagtgtgtttgtctctgcttTCTCCTTCACTGTGCCTCGCTGCAGCGAACAGCGTCGTTAAACTCTGCAAGCTCCGCCCCATAAACAAAGGCACAATGGCCGTCCCTCCTTCATACTCAGACTTGGGGAAATCTGCCAAAGACATCTTCAACAAGGGCTTTGgatATGGAATTCTAAAGCTGGATGTTAAGACCAAGTCCCAGAGTGGTGTTATgGAGTTTGCCACCTCCGGCTCCAACAACACTGACACAGGAAAGTCAGGAGGCCACCTGGAGACCAAGTACAAATTGAATGAGCTGGGCCTCAACTTCAACCAGAAATGGAACACAGACAACACTCTCACCACAGAAATCACCATGGAGGACCAGCTGGCTAAAGGCCTGAAGCTCGGTTTGGATGCGTCATTTGTGCCCAACACTGGCAAGAAGAGCGCCAAACTGAAGTCCGGCTACAAATGTGAGTTTGTAAATGTTGGCTGTGACCTGGACTTCGACATGTCCGGTCCCACTCTCCACGGAGCTGCTGTGCTGGGCTACGAGGGCTGGCTGGCGGGTTACCAGTTGGCTTTTGACACAGCCAAATCTAAACTGACCCAGAACAACTTCGCCCTTGGATACAAGGCCGGTGACTTCCAGCTTCACACCAACGTAAATGACGGCACAGAGTTCGGTGGCTCCATTTACCAAAAGGTGAACAGCAACTTAGAGACGGCAGTCCACCTGGCCTGGACAGCTGGCAGCAACAACACAAGCTTTGGAATTGGAGCCAAATACCAGCTGGATAAGGATGCCTCCCTGTCTACCAAAGTTAACAATGCCTGCCTCGTTGGAGTTGGATACACGCAAACCCTCAGGCCAGGAGTGAAGCTCACCCTCTCTGGGTTGATTGACGGGAAGAACATGAACGGCGGCGGACACAAAGTCGGCTTGGGTTTCGAGCTGGAAGCGTAAAGATTCAGCAAGAGGACAGAcaagaagagagaagagcaaCACAAGAGAAGAATAAAGAGCCCAAATGTGAGAACACGGTTAAGGTCGACCCAGCGACACAAACACATCTTCCCTCTGAGTcctacacacatatgcacacgcatacacacattcGTTGGCCTTATCCCTGAAACCCAGAGCAGCCTCCAAGACCTCTggcactgtagttttaaaaGAGTCAAGAAATTTCTTGTGTTGGTTACTTTTaaattttacattatttacaacTCCCACAACCAACCTTTGAGCAGATATTATCAGAATACAACAGACTTGTCAACAGGTAATTCATGCAAAAGCCCTGTTCTCCAAAACATTTGCTGCTTACGACCAGTTTGACCAGACAAAGTGCACTTCCAACAGAGCATTTGTGTCTTAAACAATCGGTTTTCTTcctgaaaaaaagatttgaagcaCCTTCTTATTTTGACTGTCTGgtcagcttgtttttttttgttcagatATACTCTGGGTTTAAGACATTATAAGATTAATAGAGGATGCttgttttggtatttttttgtttttcaaggcTAGAAGGAgtttttttgacttttcattGTCCCATTGACAAGTACAGTGACTGTAAACAGATGCAATAAAAGCTGGAGAGAATTAAGCAGAAAAAAGACAGAGTGGCTGATCCTTCTCAGAGTGAGTGGACTTTAATTTCAGCATTAGACCTCAGTAACACAGTTATACTGTGAACCCTCAGTTGCCTAAATGTCTATTTTTCAGGTCCTGTTTGTTAAAAGGGCTGACGGTAATTTGAGACTCTGTGTCACCTCTTTGTCTTGTCTCATTTTGTGTCCTGTACATGTTCAACCTTTACCACTACATTTCACTTTATCTGTGCTGTGCTTTGTATAGGAGATCTAGTCAACAGTTAGGACCTCAAACTGATTTTATTGAATTAATGGAATAAAGAATGTTAAACACTA
>XM_039804324.1
CCCTCGGCCGGAGGTCTGACTCGCGCATGCCcagtgtgtttgtctctgcttTCTCCTTCACTGTGCCTCGCTGCAGCGAACAGCGTCGTTAAACTCTGCAAGCTCCGCCCCATAAACAAAGGCACAATGGCCGTCCCTCCTTCATACTCAGACTTGGGGAAATCTGCCAAAGACATCTTCAACAAGGGCTTTGgatATGGAATTCTAAAGCTGGATGTTAAGACCAAGTCCCAGAGTGGTGTTGAGTTTGCCACCTCCGGCTCCAACAACACTGACACAGGAAAGTCAGGAGGCCACCTGGAGACCAAGTACAAATTGAATGAGCTGGGCCTCAACTTCAACCAGAAATGGAACACAGACAACACTCTCACCACAGAAATCACCATGGAGGACCAGCTGGCTAAAGGCCTGAAGCTCGGTTTGGATGCGTCATTTGTGCCCAACACTGGCAAGAAGAGCGCCAAACTGAAGTCCGGCTACAAATGTGAGTTTGTAAATGTTGGCTGTGACCTGGACTTCGACATGTCCGGTCCCACTCTCCACGGAGCTGCTGTGCTGGGCTACGAGGGCTGGCTGGCGGGTTACCAGTTGGCTTTTGACACAGCCAAATCTAAACTGACCCAGAACAACTTCGCCCTTGGATACAAGGCCGGTGACTTCCAGCTTCACACCAACGTAAATGACGGCACAGAGTTCGGTGGCTCCATTTACCAAAAGGTGAACAGCAACTTAGAGACGGCAGTCCACCTGGCCTGGACAGCTGGCAGCAACAACACAAGCTTTGGAATTGGAGCCAAATACCAGCTGGATAAGGATGCCTCCCTGTCTACCAAAGTTAACAATGCCTGCCTCGTTGGAGTTGGATACACGCAAACCCTCAGGCCAGGAGTGAAGCTCACCCTCTCTGGGTTGATTGACGGGAAGAACATGAACGGCGGCGGACACAAAGTCGGCTTGGGTTTCGAGCTGGAAGCGTAAAGATTCAGCAAGAGGACAGAcaagaagagagaagagcaaCACAAGAGAAGAATAAAGAGCCCAAATGTGAGAACACGGTTAAGGTCGACCCAGCGACACAAACACATCTTCCCTCTGAGTcctacacacatatgcacacgcatacacacattcGTTGGCCTTATCCCTGAAACCCAGAGCAGCCTCCAAGACCTCTggcactgtagttttaaaaGAGTCAAGAAATTTCTTGTGTTGGTTACTTTTaaattttacattatttacaacTCCCACAACCAACCTTTGAGCAGATATTATCAGAATACAACAGACTTGTCAACAGGTAATTCATGCAAAAGCCCTGTTCTCCAAAACATTTGCTGCTTACGACCAGTTTGACCAGACAAAGTGCACTTCCAACAGAGCATTTGTGTCTTAAACAATCGGTTTTCTTcctgaaaaaaagatttgaagcaCCTTCTTATTTTGACTGTCTGgtcagcttgtttttttttgttcagatATACTCTGGGTTTAAGACATTATAAGATTAATAGAGGATGCttgttttggtatttttttgtttttcaaggcTAGAAGGAgtttttttgacttttcattGTCCCATTGACAAGTACAGTGACTGTAAACAGATGCAATAAAAGCTGGAGAGAATTAAGCAGAAAAAAGACAGAGTGGCTGATCCTTCTCAGAGTGAGTGGACTTTAATTTCAGCATTAGACCTCAGTAACACAGTTATACTGTGAACCCTCAGTTGCCTAAATGTCTATTTTTCAGGTCCTGTTTGTTAAAAGGGCTGACGGTAATTTGAGACTCTGTGTCACCTCTTTGTCTTGTCTCATTTTGTGTCCTGTACATGTTCAACCTTTACCACTACATTTCACTTTATCTGTGCTGTGCTTTGTATAGGAGATCTAGTCAACAGTTAGGACCTCAAACTGATTTTATTGAATTAATGGAATAAAGAATGTTAAACACTA

Function

symbol description
vdac3 Predicted to enable voltage-gated anion channel activity. Acts upstream of or within fin regeneration. Predicted to be located in membrane and mitochondrion. Predicted to be integral component of membrane. Predicted to be part of pore complex. Predicted to be active in mitochondrial outer membrane. Is expressed in adaxial cell; musculature system; nervous system; somite; and trigeminal placode. Orthologous to human VDAC3 (voltage dependent anion channel 3).

NR:

description
voltage-dependent anion-selective channel protein 2-like isoform X2

GO:

id name namespace
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0031101 fin regeneration biological_process
GO:0044070 regulation of anion transport biological_process
GO:0005741 mitochondrial outer membrane cellular_component
GO:0008308 voltage-gated anion channel activity molecular_function

KEGG:

id description
K15040 VDAC2; voltage-dependent anion channel protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804321.1 True 2078 mRNA 0.46 11 26543026 26553731
XM_039804322.1 False 2075 mRNA 0.46 10 26543026 26553731
XM_039804323.1 False 1961 mRNA 0.45 10 26543026 26553731
XM_039804324.1 False 1958 mRNA 0.46 9 26543026 26553731

Neighbor

gene id symbol gene type direction distance location
rpl6 rpl6 coding upstream 31781 26506645 ~ 26511245 (+)
acaa2 acaa2 coding upstream 38022 26499573 ~ 26505004 (+)
ufd1l ufd1l coding upstream 49462 26489321 ~ 26493564 (+)
dhx37 dhx37 coding upstream 54625 26476188 ~ 26488401 (+)
gp1bb gp1bb,LOC102779926 coding upstream 67708 26472774 ~ 26475318 (+)
plat plat coding downstream 32049 26585780 ~ 26597313 (+)
si:dkeyp-117b11.1 NA coding downstream 44264 26597995 ~ 26607634 (+)
si:dkey-178e17.3 sbspon,LOC103359527 coding downstream 113002 26666733 ~ 26679998 (+)
pi4kab pi4ka coding downstream 133601 26687332 ~ 26719116 (+)
LOC120561052 LOC104921679,LOC106580276,LOC105940836,LOC102302829,LOC106700476 coding downstream 236467 26790198 ~ 26791064 (+)
G64841 enkd1,LOC102781555 non-coding upstream 2390 26540415 ~ 26540636 (+)
G64840 NA non-coding upstream 2803 26538658 ~ 26540223 (+)
G64839 NA non-coding upstream 4485 26538268 ~ 26538541 (+)
G64838 polb non-coding upstream 5331 26535012 ~ 26537695 (+)
G64836 polb non-coding upstream 9606 26531752 ~ 26533420 (+)
G64893 NA non-coding downstream 18513 26572244 ~ 26580813 (+)
G64930 NA non-coding downstream 109036 26662767 ~ 26663526 (+)
G64944 NA non-coding downstream 128787 26682518 ~ 26684255 (+)
G64949 btf3,LOC103470010,LOC107089645,LOC106958054,LOC106926613 non-coding downstream 207660 26761391 ~ 26829185 (+)
G64967 ykt6 non-coding downstream 339970 26893701 ~ 26896143 (+)
c6h22orf39 clg12h22orf39 other upstream 46039 26494284 ~ 26496987 (+)
G64814 cldn5,LOC103357131 other upstream 128429 26412869 ~ 26414597 (+)
nsd3 whsc1l1 other upstream 159183 26359120 ~ 26383843 (+)
LOC120560359 NA other upstream 614430 25926087 ~ 25928596 (+)
LOC120560031 LOC104941040,LOC103357154,LOC102795853 other upstream 627449 25914279 ~ 25915577 (+)
cltcl1 LOC100691387,LOC103359525 other downstream 60506 26614237 ~ 26644167 (+)
si:dkey-178e17.1 slc25a1,LOC100697273,LOC101470788,LOC103359526,LOC102784907,LOC107394264,LOC103145904 other downstream 90930 26644661 ~ 26661895 (+)
ndufs4 ndufs4 other downstream 458479 27012210 ~ 27039599 (+)
G65084 lipg other downstream 651503 27205234 ~ 27370959 (+)
mboat4 NA other downstream 2291895 28845626 ~ 28849471 (+)

Expression


Co-expression Network