pmpca (pmpca)


Basic Information

Item Value
gene id pmpca
gene name pmpca
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 29242722 ~ 29248901 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804370.1
ATGGCGACTCACATGTCGAGGTATAGAAGCTGGAGTCGTGTTCAAAGGTTTGGGATCGCAGCTTACAGAAAGTACAGCAGTGGCAGCCGATACCCAAATATCTCCCTCTCTGCACCGCTGCCTGGGATCCCCAAGCCAGTGTTTGCATCTGTACATGGTCAGGAAAAATATGAGACCAAGATCACTACTCTAGAAAATGGCCTCAAAGTCGCCTCCCAAAACAAGTTTGGTCAATTCTGCACAGTTGGAAttttagtaAATTCTGGATCCAGACATGAGGCAAAGTATCCGAGTGGAATAGCTCACTTCATAGAGAAACTTGCCTTTTCTtCCACAGCTCAGTACGGGAGTAAAGATGAAATTCTCCTCACGTTGGAAAAACACGGAGGGATATGTGACTGCCAAACGTCAAGGGATACCACCATGTATGCAGTGTCTGCTGAAGTTAAGGGTCTGGACACAGTGGTCagtcttctctctgatgctgttCTACAGCCTCGCCTGCTGGATGACGAAATCGAGATGACCAGAATGGCGGTACGCTTTGAGTTAGAAGATCTAAACATGAGGCCAGACCCTGAACCTTTACTCACTGAGATGATCCATGCTGCCGCATATCGAGGAAACACGGTTGGACTGCCTCGCTTTTGTCCTGTAGACAACGTGGACAAGATTGACAAGAAAGTGCTTCACAGCTACCTGCGTAACTACTACTGCCCCGAGCGGATGGTGCTAGCCGGAGTGGGCATCGAGCACGAGCAGCTGGTTGAATGTGCCAGGAAATACCTGCTGGATGCGAAGCCGGTGTGGGGAACAGGTGCCGTGGCCAACGTGGACCTCTCTGTAGCACAGTACACTGGTGGCATCATCAAGATTGAGAAGGATATGTCAGATGTGAGCCTTGGCCCCACCCCGATCCCAGAGCTCACCCACATCATGATCGGCCTGGAGAGCTGCTCCTTCCTGGAGGAAGACTTCATCCCATTCGCAGTGCTCAATATGATGATGGGTGGAGGAGGCTCCTTTTCTGCAGGAGGACCTGGAAAAGGCATGTTCACCCGCCTATATCTGAATGTGCTCAACAGGCATCATTGGATGTACAATGCCACCTCCTACCATCATAGCTATGAGGACAGCGGTCTGCTGTGTATCCATGCCAGTGCAGACCCCAGACAGGTGCGAGAAATGGTGGAGATAATAACGAGAGAGTTCATTCAGATGGCTAGCAGCGCAGGAGAGATGGAGCTGGAGAGGGCCAAGACTCAGCTCAAGTCCATGTTGATGATGAACCTCGAGTCGCGGCCGGTTATTTTTGAAGATGTTGGTCGCCAAGTTCTCTCCACAGGAAAGAGAAAGCTACCACATGAACTCTGTGATCTAATAAGCAATGTGACAGCCAGTGATATTAAGAGAGTAACCACTAAGATGCTGCGCAGTAAGCCCGCAGTAGCAGCTCTGGGAGACCTGACAGAGCTGCCCTCATACGAACACATCCAGGCCGCCCTGTCCAGCAAAGACGGACGTCTGCCCCGCATGTATCGCCTCTTCCGATAGAACCCCGTGGCCATCGAGCCGTGTCGTCACTGTAAATAAACTGGACTGGATTACACTAGTGTTCCCTCCCACCACAGAACTCAACACTCACTGTGGGAGGGGACTAATACCCGGGCTCTCGGCTGAACCTCTGAGAGTGGGGATTTTAAAGAAAAGTTGCATTTTACTCGACAGTAACCCTAGTCTACATACACAGTTGGAGTAtctgtatttgttgtttgtggGCAGGAAAGCCATATTTCATTATTTACCGGGGTGGTTTGCAGGAGTTTGGTTTTAAAGGGACAATTCACCCCAAAGCCAAAATTAGTTAGTTTTTAATTTGAAAACCTAAATACCAACCTGTTACGTTTTaaatatatgaatgaatgatattaCACTGTGAAAGTAAAGCAGCATATAGGCAAGAGAAGGGGTTGCTAACGTCCCCAGCAGTGTCTAAACTATTATTGTTTTAGTGAGCTATTGTTTTTCTCTGCTTGCAAACCCTCAGCTCTCTAAAATGCACAGCGCTCCACATCGATCCTTCTCTTTTCATAGAGTGGATGGATCAGAAACCAGTTTAAAATCTTACAATTTATACAACACAGCACTTCAGTCTCACTTCACAGGCACAGAAGACTCTACACAACCCGAGGGATTAACAGATTAATAAAGGCATCCTTGGAAGTTTTTGGATAAATGTGACAAACCTTACAACTGTAGCAAATTTGTCCTTAAGAAGATTGAAATCATGGTTTCTGTCATCACTGTGTCAGATGTACTGTAAAGAGATTGAAATCCAAAGtgaaatctgttatttttttgtacttttgtgGTTGTGTTGATGCCcttgcaaataaaaaatatatgatTATATTAACAGGA

Function

symbol description
pmpca Predicted to enable metal ion binding activity. Predicted to be involved in protein processing involved in protein targeting to mitochondrion. Predicted to act upstream of or within proteolysis. Predicted to be located in mitochondrial inner membrane and mitochondrial matrix. Predicted to be active in mitochondrion. Is expressed in several structures, including alar plate midbrain region; anterior neural keel; head; immature eye; and optic tectum. Human ortholog(s) of this gene implicated in autosomal recessive spinocerebellar ataxia 2. Orthologous to human PMPCA (peptidase, mitochondrial processing subunit alpha).

NR:

description
mitochondrial-processing peptidase subunit alpha-like

GO: NA

KEGG:

id description
K01412 PMPCA, MAS2; mitochondrial-processing peptidase subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804370.1 True 2421 mRNA 0.47 13 29242722 29248901

Neighbor

gene id symbol gene type direction distance location
LOC120561007 NA coding upstream 19042 29220854 ~ 29223680 (+)
ptgs1 LOC103362336 coding upstream 27927 29203493 ~ 29214795 (+)
zgc:152968 NA coding upstream 170555 29060747 ~ 29072167 (+)
LOC120560378 st8sia3,LOC104919001,LOC100693561,LOC102785111,LOC102199258,LOC101477372 coding upstream 192498 29041940 ~ 29050224 (+)
LOC120560871 ccng2,LOC102294549,LOC100696397,LOC102783398 coding upstream 201893 29036015 ~ 29040829 (+)
LOC120560903 LOC103397900,LOC107386316,LOC108233556,LOC101070320,LOC106510880,LOC100705620,LOC101474073 coding downstream 10017 29258918 ~ 29260327 (+)
LOC120560594 LOC103353434 coding downstream 48221 29297122 ~ 29343400 (+)
camsap1b camsap1 coding downstream 105219 29354120 ~ 29382295 (+)
LOC120560482 NA coding downstream 133475 29382376 ~ 29390784 (+)
LOC120561062 LOC104962503,LOC102314469 coding downstream 244351 29493252 ~ 29495142 (+)
LOC120560778 NA non-coding upstream 111506 29072941 ~ 29131216 (+)
G65570 NA non-coding upstream 137113 29103988 ~ 29105609 (+)
G65565 LOC108233773,LOC103375797 non-coding upstream 144409 29078426 ~ 29098313 (+)
G65473 NA non-coding upstream 240542 28985613 ~ 29002180 (+)
G65418 NA non-coding upstream 426322 28816185 ~ 28816400 (+)
G65710 NA non-coding downstream 298548 29547449 ~ 29614880 (+)
G65713 NA non-coding downstream 340106 29589007 ~ 29591364 (+)
G65734 NA non-coding downstream 522738 29771639 ~ 29771864 (+)
G65738 NA non-coding downstream 563071 29811972 ~ 29812218 (+)
G65745 NA non-coding downstream 686992 29935893 ~ 29936995 (+)
mboat4 NA other upstream 393251 28845626 ~ 28849471 (+)
G65084 lipg other upstream 1871763 27205234 ~ 27370959 (+)
ndufs4 ndufs4 other upstream 2203123 27012210 ~ 27039599 (+)
si:dkey-178e17.1 slc25a1,LOC100697273,LOC101470788,LOC103359526,LOC102784907,LOC107394264,LOC103145904 other upstream 2580827 26644661 ~ 26661895 (+)
cltcl1 LOC100691387,LOC103359525 other upstream 2598555 26614237 ~ 26644167 (+)
ubac1 ubac1 other downstream 95679 29344580 ~ 29351756 (+)
fbxo21 fbxo21 other downstream 937947 30186848 ~ 30212108 (+)
LOC120560820 NA other downstream 997986 30246887 ~ 30251519 (+)
G65899 taok3 other downstream 1325185 30574086 ~ 30578159 (+)
LOC120561064 NA other downstream 1608679 30857580 ~ 30893280 (+)

Expression


Co-expression Network