LOC120561314 (nr5a1,sf-1)


Basic Information

Item Value
gene id LOC120561314
gene name nr5a1,sf-1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 13649892 ~ 13686906 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804376.1
TCTTTAATGGTCTGCATCAACACGCACTTCTACTGGCTCTTAAAGCAGCAGTGTTACATTCACTGACCATACGGATTCCtattgctcttttttttcttctcattttgtTCCCCTCCGCATGCTCATGCAAGGTTGCAGCAACACATCCAGCTTTTAATTCTCAGACAATCATCACTAACTGGCTATAGCTGCTGTTCCAATGTTGGGAGACAAGGCTCACGGTGTCACTTTGAAGGTTATGGAATACACATATGATGACGACCTGGAGGagctgtgtcctgtgtgtggaGACAAAGTGTCCGGATACCACTACGGCCTGCTCACGTGCGAGAGCTGCAAGGGCTTCTTCAAGAGGACGGTGCAGAACAACAAGAGGTACACGTGCGCGGAGAACCAGGAGTGTAAAATAGACAAAACCCAGAGGAAGAGATGTCCTTTCTGTCGCTTCCAGAAGTGCCTCAACGTCGGGATGCGGCTAGAAGCGGTGCGCGCAGACCGCATGCGTGGGGGGAGGAATAAATTTGGCCCCATGTACAAGAGAGACAGGGCCTTGAAGCAGCAGAAGAAGGCTTTGATACGATCCAATGGCTTCAAGCTGGAGAGTGCGGCGCCTCCGCCGGGCTCTCCTCTGCAGGCCGACTACGGCTTCCCCGGCTCCATGCACAGCCTGCCCGCCATCTCCAAAAGTCTGCTCCCCTCCACCCCGAGCTCCATCACGCCTACAGACTACGAGACCAACCTCTACGGACCCCCGTCCCTGGGCATGGCCATGCAGTCCCACGTCCCCCTCGCCGCTCAGTACCAGTACACATCCTTCCCCGGCAGGGCCATTAAAGCCGAGTGCCCCGACTACACCAGCTCCCCCGAGTCTCTGACAGGATACCCGTACCCCGACATGTACCCGTCGGCCTCGCCGCAGCCGCCCAGCCTGCCGCCGCTGGTGCTGGAGCTGCTGCGCTGCGATCCGGATGAGCTGGCGGTGCAGAGTAAGATTGTGGCTCACCTGCAGCAGGAGCAGAGCGGCCGCGGCCGGCTGGACAAGCCCAGCACCTTCAGCCTCATGTGCCGCATGGCAGACCAGACGCTCTTCTCCATCGTGGAGTGGGCTCGGAGCTGCATCTTCTTCAAGGAGCTCAGGGTGGGAGATCAAATGAAGCTGCTCCATAACTGCTGGTCTGAACTTCTGGTCCTGGATCACATTTTCAGACAAGTGCAACATGGACAGGAAGACAGTATCCTGCTGGTGACCGGCCAGGAGGTGGAGCTGCCGTTCATCCTGTCCCAAGCTGAGGCGACTCTGTCCAGCATGGTCCAGAGAGGTCAGGAGCTGGCGGCGAGGCTGCGGGCGCTGCAGCTGGATCGCAGAGAGATCGCCTGTCTGAAATTCCTCTTCCTGTTCAACCCCAatgtgaAGCTGCTGGAGGACCAGGCATTCGTGGAGGGCGTCCAGGAGCAGGTGAACGGGGCTCTGCTGGAGTACACCCTGTCCACCTACCCTCAGTTCCAGGAGAAGTTCAGCCAGCTGGTTGTGCGGCTGCCGGAGCTGCGCTCCCTCAGCACGCAGGCGGAGGACTACCTGTGCTACATGCATCTGAGCGGAGAGGTGCCCTGCAACAACCTGCTCATCGAGATGCTGCACGCCAAGcgagcgtgtgtgtgagaggtgcACGCCGGGTGCGCCGTcgcaatgtgtttttttttctctagcgGAGACTGTGCGTGGGAGGGAAAGTGTGAGCGAGACgaaaaaaattcaaatgaaGATAGACAGGTTCATATTGGGTCATCTTTGCGAGGGCTTTTGTTTGAGTTGGAGAGGAGGAAAATGTTCTTTAGAGTTTGGAATTATAAAGCTCCATCTGTATCTCGAGGTAGTTTTTTTCCGATTTTGAATGCTGATGTTTTCATATCCTGCAGAGCTACATTAACGTGACCTTTATAAACTGGATTTTCTACCCTGTTAGCAAACATCTAAAATTAGATCTTCCTGTAGAGTTAAATTATGTCCTCTTTGACTATCTACTATATCACATGAATCCAAAATCACAGACAAAGATTTTCTACATCCCACAAGAGCTGCCCAGCAAACATTTAAAGTCAGAGGAGGAATCTTTAGCCTGCATCAGTGCTGAACAGTCATGAAAACACGGTGTCAAGAGGACTGTTGAGATATCTGTCGGAAGCCGCGACCTGCATCATTTTTGAAACATCCACACCTAAATGTCGTTCTGATATCGCTGCAAAACTGTTTCCAACGCCAACTTAGGAATTCTATTGTGAAATCTGGCGCTGGGTGGGCCGATGTTGAACTGACACATCACAAAAATGGGACTATGTGCATGAACACGTCTGTCGAATGCTTGCTGGGTGAGCTAATGTGAACCTTTCCCAACAGATTTTGTAGCTTCTTTTCAAAAAATTCTATTCtagtgataaatgagtcatttTTGATCGGAAATGTCAGTTGCAACTTTATGATTCCAAGTTCACCAACACTGTCCCTAGAttattctttttcttattttagaTGAAGACAGACTTCAGGATAACACGACACACTGTGGTCTCGTCAGACTAGACCGCTCTTATCGCTACACTTGTTCGTTTTGCCAccagtgttaaaaaaagaaatgaaatatgAAAGCTCTATGGGATTCAATATAGTTTGTTTTAATCTATTTAGATGttaatatattgatatatagAAGCCAGACATGTTAACAAAAAATCTTATTCTTATTTAGTTAGTTATCAAACCCTTACCAAGAAAGAGTaaatgaaagggagagagggacaggTAAGAAAGAGGGACACGGACAAAGAAAGGgggagataaaaaaaagggaaggagaaagagagaaaactgCACACAGCGATGCCTtatggatgaaaaaaaaaagcagagtgAAGCAGATAGAGGAGGGGAAAAAGACACATCTATGTGCAAATGATAAGGGAGAGATGAATGACAAAGACAGCATTTGTCTTTCTTTAAGTAAAGATGA
>XM_039804377.1
TCTTTAATGGTCTGCATCAACACGCACTTCTACTGGCTCTTAAAGCAGCAGTGTTACATTCACTGACCATACGGATTCCtattgctcttttttttcttctcattttgtTCCCCTCCGCATGCTCATGCAAGGTTGCAGCAACACATCCAGCTTTTAATTCTCAGACAATCATCACTAACTGGCTATAGCTGCTGTTCCAATGTTGGGAGACAAGGCTCACGGTGTCACTTTGAAGGTTATGGAATACACATATGATGACGACCTGGAGGagctgtgtcctgtgtgtggaGACAAAGTGTCCGGATACCACTACGGCCTGCTCACGTGCGAGAGCTGCAAGGGCTTCTTCAAGAGGACGGTGCAGAACAACAAGAGGTACACGTGCGCGGAGAACCAGGAGTGTAAAATAGACAAAACCCAGAGGAAGAGATGTCCTTTCTGTCGCTTCCAGAAGTGCCTCAACGTCGGGATGCGGCTAGAAGACCGCATGCGTGGGGGGAGGAATAAATTTGGCCCCATGTACAAGAGAGACAGGGCCTTGAAGCAGCAGAAGAAGGCTTTGATACGATCCAATGGCTTCAAGCTGGAGAGTGCGGCGCCTCCGCCGGGCTCTCCTCTGCAGGCCGACTACGGCTTCCCCGGCTCCATGCACAGCCTGCCCGCCATCTCCAAAAGTCTGCTCCCCTCCACCCCGAGCTCCATCACGCCTACAGACTACGAGACCAACCTCTACGGACCCCCGTCCCTGGGCATGGCCATGCAGTCCCACGTCCCCCTCGCCGCTCAGTACCAGTACACATCCTTCCCCGGCAGGGCCATTAAAGCCGAGTGCCCCGACTACACCAGCTCCCCCGAGTCTCTGACAGGATACCCGTACCCCGACATGTACCCGTCGGCCTCGCCGCAGCCGCCCAGCCTGCCGCCGCTGGTGCTGGAGCTGCTGCGCTGCGATCCGGATGAGCTGGCGGTGCAGAGTAAGATTGTGGCTCACCTGCAGCAGGAGCAGAGCGGCCGCGGCCGGCTGGACAAGCCCAGCACCTTCAGCCTCATGTGCCGCATGGCAGACCAGACGCTCTTCTCCATCGTGGAGTGGGCTCGGAGCTGCATCTTCTTCAAGGAGCTCAGGGTGGGAGATCAAATGAAGCTGCTCCATAACTGCTGGTCTGAACTTCTGGTCCTGGATCACATTTTCAGACAAGTGCAACATGGACAGGAAGACAGTATCCTGCTGGTGACCGGCCAGGAGGTGGAGCTGCCGTTCATCCTGTCCCAAGCTGAGGCGACTCTGTCCAGCATGGTCCAGAGAGGTCAGGAGCTGGCGGCGAGGCTGCGGGCGCTGCAGCTGGATCGCAGAGAGATCGCCTGTCTGAAATTCCTCTTCCTGTTCAACCCCAatgtgaAGCTGCTGGAGGACCAGGCATTCGTGGAGGGCGTCCAGGAGCAGGTGAACGGGGCTCTGCTGGAGTACACCCTGTCCACCTACCCTCAGTTCCAGGAGAAGTTCAGCCAGCTGGTTGTGCGGCTGCCGGAGCTGCGCTCCCTCAGCACGCAGGCGGAGGACTACCTGTGCTACATGCATCTGAGCGGAGAGGTGCCCTGCAACAACCTGCTCATCGAGATGCTGCACGCCAAGcgagcgtgtgtgtgagaggtgcACGCCGGGTGCGCCGTcgcaatgtgtttttttttctctagcgGAGACTGTGCGTGGGAGGGAAAGTGTGAGCGAGACgaaaaaaattcaaatgaaGATAGACAGGTTCATATTGGGTCATCTTTGCGAGGGCTTTTGTTTGAGTTGGAGAGGAGGAAAATGTTCTTTAGAGTTTGGAATTATAAAGCTCCATCTGTATCTCGAGGTAGTTTTTTTCCGATTTTGAATGCTGATGTTTTCATATCCTGCAGAGCTACATTAACGTGACCTTTATAAACTGGATTTTCTACCCTGTTAGCAAACATCTAAAATTAGATCTTCCTGTAGAGTTAAATTATGTCCTCTTTGACTATCTACTATATCACATGAATCCAAAATCACAGACAAAGATTTTCTACATCCCACAAGAGCTGCCCAGCAAACATTTAAAGTCAGAGGAGGAATCTTTAGCCTGCATCAGTGCTGAACAGTCATGAAAACACGGTGTCAAGAGGACTGTTGAGATATCTGTCGGAAGCCGCGACCTGCATCATTTTTGAAACATCCACACCTAAATGTCGTTCTGATATCGCTGCAAAACTGTTTCCAACGCCAACTTAGGAATTCTATTGTGAAATCTGGCGCTGGGTGGGCCGATGTTGAACTGACACATCACAAAAATGGGACTATGTGCATGAACACGTCTGTCGAATGCTTGCTGGGTGAGCTAATGTGAACCTTTCCCAACAGATTTTGTAGCTTCTTTTCAAAAAATTCTATTCtagtgataaatgagtcatttTTGATCGGAAATGTCAGTTGCAACTTTATGATTCCAAGTTCACCAACACTGTCCCTAGAttattctttttcttattttagaTGAAGACAGACTTCAGGATAACACGACACACTGTGGTCTCGTCAGACTAGACCGCTCTTATCGCTACACTTGTTCGTTTTGCCAccagtgttaaaaaaagaaatgaaatatgAAAGCTCTATGGGATTCAATATAGTTTGTTTTAATCTATTTAGATGttaatatattgatatatagAAGCCAGACATGTTAACAAAAAATCTTATTCTTATTTAGTTAGTTATCAAACCCTTACCAAGAAAGAGTaaatgaaagggagagagggacaggTAAGAAAGAGGGACACGGACAAAGAAAGGgggagataaaaaaaagggaaggagaaagagagaaaactgCACACAGCGATGCCTtatggatgaaaaaaaaaagcagagtgAAGCAGATAGAGGAGGGGAAAAAGACACATCTATGTGCAAATGATAAGGGAGAGATGAATGACAAAGACAGCATTTGTCTTTCTTTAAGTAAAGATGA

Function

symbol description
nr5a1 Enables several functions, including RNA polymerase II transcription regulatory region sequence-specific DNA binding activity; nuclear receptor activity; and phospholipid binding activity. Involved in several processes, including gonad development; positive regulation of macromolecule metabolic process; and positive regulation of male gonad development. Located in cytosol and nucleoplasm. Implicated in 46,XX sex reversal 4; 46,XY sex reversal 3; Zellweger syndrome; primary ovarian insufficiency 7; and spermatogenic failure 8.

NR:

description
PREDICTED: steroidogenic factor 1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08705 NR5A3, ftz-f1; nuclear receptor subfamily 5 group A member 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804376.1 True 3005 mRNA 0.50 7 13649892 13686906
XM_039804377.1 False 2993 mRNA 0.49 7 13649892 13686906

Neighbor

gene id symbol gene type direction distance location
LOC120561257 NA coding downstream 555396 13084483 ~ 13094496 (-)
LOC120560514 LOC107752212,LOC107675959,LOC107679452 coding downstream 589099 13059490 ~ 13060793 (-)
LOC120561259 NA coding downstream 611445 13036828 ~ 13038447 (-)
LOC120561258 NA coding downstream 617975 13025415 ~ 13031917 (-)
LOC120561256 NA coding downstream 701537 12944844 ~ 12948355 (-)
nr6a1a nr6a1 coding upstream 53447 13740353 ~ 13864440 (-)
LOC120559998 NA coding upstream 276237 13963143 ~ 13972136 (-)
htr7c htr7,LOC104934772,LOC100705941,LOC102292089 coding upstream 420497 14107403 ~ 14142258 (-)
LOC120560956 LOC103141353,LOC103469718,LOC100701549,LOC106929229 coding upstream 559577 14246483 ~ 14248811 (-)
LOC120560399 LOC103369226,LOC100702093 coding upstream 568791 14255697 ~ 14260239 (-)
G61271 NA non-coding downstream 2571 13645392 ~ 13647321 (-)
G61243 NA non-coding downstream 85329 13564214 ~ 13564563 (-)
LOC120560059 NA non-coding downstream 218158 13415069 ~ 13431734 (-)
G61229 NA non-coding downstream 243138 13405447 ~ 13406754 (-)
LOC120561378 NA non-coding downstream 259343 13387476 ~ 13390549 (-)
G61301 NA non-coding upstream 129994 13816900 ~ 13817523 (-)
G61302 NA non-coding upstream 132604 13819510 ~ 13819728 (-)
G61304 NA non-coding upstream 169335 13856241 ~ 13856771 (-)
G61328 NA non-coding upstream 326430 14013336 ~ 14013562 (-)
G61334 NA non-coding upstream 394421 14081327 ~ 14081555 (-)
G61264 NA other downstream 60560 13589039 ~ 13589332 (-)
LOC120561038 LOC102778062,LOC101486272,LOC102199534,LOC108245630 other downstream 1094607 12293707 ~ 12555285 (-)
LOC120561001 whrn,LOC102797690 other downstream 1588246 11901650 ~ 12061646 (-)
abca2 abca2 other downstream 2056232 11285385 ~ 11593660 (-)
G60715 NA other downstream 2460151 11189142 ~ 11189741 (-)
si:ch73-138n13.1 LOC102794857,LOC107084631 other upstream 641245 14328151 ~ 14364326 (-)
trnaa-agc_14 NA other upstream 1252069 14938975 ~ 14939047 (-)
trnaa-agc_15 NA other upstream 1257590 14944496 ~ 14944568 (-)
trnae-cuc_15 NA other upstream 1261853 14948759 ~ 14948830 (-)
trnas-gcu NA other upstream 1264596 14951502 ~ 14951583 (-)

Expression


Co-expression Network