nr6a1a (nr6a1)


Basic Information

Item Value
gene id nr6a1a
gene name nr6a1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 13740353 ~ 13864440 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804378.1
GACAAAAGCAGGGACACCTTGGTTCACTTCAGACTGCGCTATCCCTCCCACCATCATCGCACCATCACCCGCAACGGTGTGCAGGGGGTTTTCCGTggcggtgagagagagagagagagagagagagagaggcgacGTCGGGTTGACTGACTCGGGATCAGCCCATGCAGGAGGATGGAGATAGAGAAGAGGACGAATGGGTTCGACTACCCGGAGACAAACAACGCCAAGTCCGTTAACGGCTTTTACAGCGACCATCCATTGGAGTCTGAACAGAACAACAGCATGGATGATCCAGCGGACCAGCGAACTTGCCTTATCTGTGGAGATCGCGCCACAGGCCTGCACTATGGCATCATCTCCTGCGAGGGCTGCAAGGGCTTCTTTAAGCGCAGCATCTGCAACAAGCGCGTGTACCGCTGCAGCCGCGACAAGAACTGCGAGATGTCGCGCAAGCAGCGCAACCGCTGCCAGTACTGCCGCCTGCTCAAGTGTCTGCAAATGGGGATGAACCGCAAAGCAATCAGGGAGGATGGCATGCCAGGAGGGAGGAACAAAAGCATCGGGCCTGTTCAGatcACTGAGGAGGAGATAGAGCGGATCATGTCGGGCCAGGAGTTCAAGGAGGATGCCCCGGAGCACACCTGGGGCACCAACGGCGACAGTGACCACAGCTCTCCGAGCAACGGAGCCTCGGAGGGCAACCAGCCGTCACCTGCCTCCACCCTTTCATCCAACCGCTCCGTGGAAATGAACGGCTACACGGCGGCCCTCAGGGACCAATACATAAACACCTCCATGTCCACACACTATCAGCTCCTGCCTCACCTGTTCAGCTACGCGGCCCAGTCCGGCCTGCTGGCCCCCCAGCCCCGCAGCCTCTACCCACAGTCCCACCCACTGGTGCTGCAGCTGGTGGCTGCTGAAGACCTGGCCCCCCTGGCAACCCCTATGCTCATAGAAGACGGGTACAAAGTGACCCAGGTGGAGCTGTTTGCGCTGCTGTGCCGCCTGGCGGACGAGCTGCTCTTCCGCCAGATCTCCTGGATCAAGAAGCTGCCGTTCTTCTGCGAGCTCTCCATAGAGGACTACACCTGCCTGCTCAGCTCCACCTGGCAGGAGCTCATCCTGCTCTCCTGCCTCACCATCTACAGCGCTCAGATCTTCGGAGACCTGGCCGACGTCACCGCCAAGTACACGCCGTCTGACGACGAGCTGCAGGGCTTCAGCGAGGACGGCATGGAGGTGATGGAGAGGTTGATATATCTGTTCCGCAAGTTTCACCAGTTGAAGATCAGCAACGAGGAGTATGCCTGTATGAAAGCCATCAACTTCCTCAACCAAGATATCAGAGGATTGTCCAACATCTCCCAGCTGGAGCAGCTGAACAAGCGCTACTGGTATGTGTGTCAGGACTACGCTGAATACAAGTACCCGCACCAGCCCAAACGCTTCCCTGAGATCATGATGTGTCTCCCGGAGATCCGCTGCATCGCAGGGAAGCTTGTGAATGTCCCTCTGGAGCAGCTCCCACTCTTGTTCAAAGCAGTCTTGCACTCCTGCAAATCCAGCCTGACCAGCTACAGGACCGGCCCGTCGCCCTGCGTGACCACCTCCTCCGGAAACTAGACCGACCTCCCCAC
>XM_039804379.1
AACACTGGATGCTTCTCACTATGGCCCCCTAACCAGGACGCTGGAGGGGATGAAGGAAGAGAACCCACTGGATGATGATCCAGCGGACCAGCGAACTTGCCTTATCTGTGGAGATCGCGCCACAGGCCTGCACTATGGCATCATCTCCTGCGAGGGCTGCAAGGGCTTCTTTAAGCGCAGCATCTGCAACAAGCGCGTGTACCGCTGCAGCCGCGACAAGAACTGCGAGATGTCGCGCAAGCAGCGCAACCGCTGCCAGTACTGCCGCCTGCTCAAGTGTCTGCAAATGGGGATGAACCGCAAAGCAATCAGGGAGGATGGCATGCCAGGAGGGAGGAACAAAAGCATCGGGCCTGTTCAGatcACTGAGGAGGAGATAGAGCGGATCATGTCGGGCCAGGAGTTCAAGGAGGATGCCCCGGAGCACACCTGGGGCACCAACGGCGACAGTGACCACAGCTCTCCGAGCAACGGAGCCTCGGAGGGCAACCAGCCGTCACCTGCCTCCACCCTTTCATCCAACCGCTCCGTGGAAATGAACGGCTACACGGCGGCCCTCAGGGACCAATACATAAACACCTCCATGTCCACACACTATCAGCTCCTGCCTCACCTGTTCAGCTACGCGGCCCAGTCCGGCCTGCTGGCCCCCCAGCCCCGCAGCCTCTACCCACAGTCCCACCCACTGGTGCTGCAGCTGGTGGCTGCTGAAGACCTGGCCCCCCTGGCAACCCCTATGCTCATAGAAGACGGGTACAAAGTGACCCAGGTGGAGCTGTTTGCGCTGCTGTGCCGCCTGGCGGACGAGCTGCTCTTCCGCCAGATCTCCTGGATCAAGAAGCTGCCGTTCTTCTGCGAGCTCTCCATAGAGGACTACACCTGCCTGCTCAGCTCCACCTGGCAGGAGCTCATCCTGCTCTCCTGCCTCACCATCTACAGCGCTCAGATCTTCGGAGACCTGGCCGACGTCACCGCCAAGTACACGCCGTCTGACGACGAGCTGCAGGGCTTCAGCGAGGACGGCATGGAGGTGATGGAGAGGTTGATATATCTGTTCCGCAAGTTTCACCAGTTGAAGATCAGCAACGAGGAGTATGCCTGTATGAAAGCCATCAACTTCCTCAACCAAGATATCAGAGGATTGTCCAACATCTCCCAGCTGGAGCAGCTGAACAAGCGCTACTGGTATGTGTGTCAGGACTACGCTGAATACAAGTACCCGCACCAGCCCAAACGCTTCCCTGAGATCATGATGTGTCTCCCGGAGATCCGCTGCATCGCAGGGAAGCTTGTGAATGTCCCTCTGGAGCAGCTCCCACTCTTGTTCAAAGCAGTCTTGCACTCCTGCAAATCCAGCCTGACCAGCTACAGGACCGGCCCGTCGCCCTGCGTGACCACCTCCTCCGGAAACTAGACCGACCTCCCCAC
>XM_039804380.1
TTGGACCTCAAGCCAAGCTGTGACCCCGGGGCTTGAACTCTGCGGTCATGTGACTGGGCAGTAAAGTGACCAGTGGTGTTGCTCCGCTCTGGCTGTGGTCAGAGAGGGACAGGCTGTCGAAGAAAGAGGTtgctgggagagagagagagagagagaactgaggcagagaaagaacagagagtcATGAGGCGACCAGGCCCAGTGGCTTTTTCTTAGCCTAAGTCCGAGCTTGAATGGGGTCCAGGCAGACTGGGAGAAGCATGAAATGGATACATGGGAAGATGATCCAGCGGACCAGCGAACTTGCCTTATCTGTGGAGATCGCGCCACAGGCCTGCACTATGGCATCATCTCCTGCGAGGGCTGCAAGGGCTTCTTTAAGCGCAGCATCTGCAACAAGCGCGTGTACCGCTGCAGCCGCGACAAGAACTGCGAGATGTCGCGCAAGCAGCGCAACCGCTGCCAGTACTGCCGCCTGCTCAAGTGTCTGCAAATGGGGATGAACCGCAAAGCAATCAGGGAGGATGGCATGCCAGGAGGGAGGAACAAAAGCATCGGGCCTGTTCAGatcACTGAGGAGGAGATAGAGCGGATCATGTCGGGCCAGGAGTTCAAGGAGGATGCCCCGGAGCACACCTGGGGCACCAACGGCGACAGTGACCACAGCTCTCCGAGCAACGGAGCCTCGGAGGGCAACCAGCCGTCACCTGCCTCCACCCTTTCATCCAACCGCTCCGTGGAAATGAACGGCTACACGGCGGCCCTCAGGGACCAATACATAAACACCTCCATGTCCACACACTATCAGCTCCTGCCTCACCTGTTCAGCTACGCGGCCCAGTCCGGCCTGCTGGCCCCCCAGCCCCGCAGCCTCTACCCACAGTCCCACCCACTGGTGCTGCAGCTGGTGGCTGCTGAAGACCTGGCCCCCCTGGCAACCCCTATGCTCATAGAAGACGGGTACAAAGTGACCCAGGTGGAGCTGTTTGCGCTGCTGTGCCGCCTGGCGGACGAGCTGCTCTTCCGCCAGATCTCCTGGATCAAGAAGCTGCCGTTCTTCTGCGAGCTCTCCATAGAGGACTACACCTGCCTGCTCAGCTCCACCTGGCAGGAGCTCATCCTGCTCTCCTGCCTCACCATCTACAGCGCTCAGATCTTCGGAGACCTGGCCGACGTCACCGCCAAGTACACGCCGTCTGACGACGAGCTGCAGGGCTTCAGCGAGGACGGCATGGAGGTGATGGAGAGGTTGATATATCTGTTCCGCAAGTTTCACCAGTTGAAGATCAGCAACGAGGAGTATGCCTGTATGAAAGCCATCAACTTCCTCAACCAAGATATCAGAGGATTGTCCAACATCTCCCAGCTGGAGCAGCTGAACAAGCGCTACTGGTATGTGTGTCAGGACTACGCTGAATACAAGTACCCGCACCAGCCCAAACGCTTCCCTGAGATCATGATGTGTCTCCCGGAGATCCGCTGCATCGCAGGGAAGCTTGTGAATGTCCCTCTGGAGCAGCTCCCACTCTTGTTCAAAGCAGTCTTGCACTCCTGCAAATCCAGCCTGACCAGCTACAGGACCGGCCCGTCGCCCTGCGTGACCACCTCCTCCGGAAACTAGACCGACCTCCCCAC

Function

symbol description
nr6a1 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in gamete generation and negative regulation of transcription by RNA polymerase II. Predicted to be located in nucleoplasm. Predicted to be part of chromatin and transcription regulator complex.

NR:

description
PREDICTED: nuclear receptor subfamily 6 group A member 1 isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08561 NR6A1, GCNF; germ cell nuclear factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804378.1 True 1643 mRNA 0.58 10 13740353 13864440
XM_039804379.1 False 1428 mRNA 0.59 9 13740353 13776219
XM_039804380.1 False 1635 mRNA 0.58 9 13740353 13773378

Neighbor

gene id symbol gene type direction distance location
LOC120561314 nr5a1,sf-1 coding downstream 53447 13649892 ~ 13686906 (-)
LOC120561257 NA coding downstream 645857 13084483 ~ 13094496 (-)
LOC120560514 LOC107752212,LOC107675959,LOC107679452 coding downstream 679560 13059490 ~ 13060793 (-)
LOC120561259 NA coding downstream 701906 13036828 ~ 13038447 (-)
LOC120561258 NA coding downstream 708436 13025415 ~ 13031917 (-)
LOC120559998 NA coding upstream 98703 13963143 ~ 13972136 (-)
htr7c htr7,LOC104934772,LOC100705941,LOC102292089 coding upstream 242963 14107403 ~ 14142258 (-)
LOC120560956 LOC103141353,LOC103469718,LOC100701549,LOC106929229 coding upstream 382043 14246483 ~ 14248811 (-)
LOC120560399 LOC103369226,LOC100702093 coding upstream 391257 14255697 ~ 14260239 (-)
LOC120560975 pxn,LOC102314602,LOC102784766,LOC102212913,LOC101475765 coding upstream 424562 14289002 ~ 14312345 (-)
G61274 NA non-coding downstream 60900 13679239 ~ 13679453 (-)
G61273 NA non-coding downstream 70284 13669821 ~ 13670069 (-)
G61271 NA non-coding downstream 93032 13645392 ~ 13647321 (-)
G61243 NA non-coding downstream 175790 13564214 ~ 13564563 (-)
LOC120560059 NA non-coding downstream 308619 13415069 ~ 13431734 (-)
G61328 NA non-coding upstream 148896 14013336 ~ 14013562 (-)
G61334 NA non-coding upstream 216887 14081327 ~ 14081555 (-)
G61335 NA non-coding upstream 226035 14090475 ~ 14090750 (-)
G61359 rtili,piwil2 non-coding upstream 312883 14177323 ~ 14178170 (-)
G61404 tnks non-coding upstream 354907 14219347 ~ 14233438 (-)
G61264 NA other downstream 151021 13589039 ~ 13589332 (-)
LOC120561038 LOC102778062,LOC101486272,LOC102199534,LOC108245630 other downstream 1185068 12293707 ~ 12555285 (-)
LOC120561001 whrn,LOC102797690 other downstream 1678707 11901650 ~ 12061646 (-)
abca2 abca2 other downstream 2146693 11285385 ~ 11593660 (-)
G60715 NA other downstream 2550612 11189142 ~ 11189741 (-)
si:ch73-138n13.1 LOC102794857,LOC107084631 other upstream 463711 14328151 ~ 14364326 (-)
trnaa-agc_14 NA other upstream 1074535 14938975 ~ 14939047 (-)
trnaa-agc_15 NA other upstream 1080056 14944496 ~ 14944568 (-)
trnae-cuc_15 NA other upstream 1084319 14948759 ~ 14948830 (-)
trnas-gcu NA other upstream 1087062 14951502 ~ 14951583 (-)

Expression


Co-expression Network