wdr54 (wdr54)


Basic Information

Item Value
gene id wdr54
gene name wdr54
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 16550250 ~ 16554512 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804383.1
CCGAGGACGCAAGGATGACGTCTTACGTAGAAGTAGTGGCGTTGTCTCTATGGCTGCAGACGACGCGGAGACTGACACCAGATCACCTTCTGCCATTTCAACAAACCGCTCTGCCAAGAGAAGACCGCTCGATGTATCACAAAGAGAAGAGCATCCAGGTCAAAAACAGCGCCTCGGCGCTGTACAACAACCTCGGCGTGCTACGCATCGCCCCGCGGCATCTCACCTACTTCACGGTGGTCCATGCTAACGTGGTCAACATGGTCAGCGCGTCCTGGGACGGCCTCAACTATTCCCACCGCCAGCTGCAGTCCAAGGAGCCCAATGTCGCCACAAGCACATCGCTCATCATGCAGGCTGCGTTTTGTCCTCTGCCCTCTCGTGATCTGCTGGTGGTGACCTCTCAGAAAGGCATCCAGATGTATGAATCTGATGGCTCCATCATGGTGTACTGGCATGCACTCGATACTCCGGAAACACCTACAGCACAGGCCGTATTTTCTCGGGGGATATCAGCAGTGCGGGAGAGTTATATATGTGTGGgCGTTTCATCCGGTGCAATTCTAGTATTTGATGTTCCCAGTAAAGGCAGTAATATTACCCTGTCTGAGGTTCTGAAGGAGCACAAGGAGTCCATCACTGACATGGCCCCGGAGTGCTCTGGCAGCCAGGAGTGCATTGCTGATCTGGTCAGTGCAGACGATGGGGgcaacctgtgtgtgtggaagtCTGGGGAGGACTTTCAGCTGCTCAACAACATCCCCGGCTTTGATATAAGCTGCCCATCTGTCAAGTTGTGGAAAGGCACAGTGGTGGCAGGTTATGGCACAGGCCAGATTCGTCTCTATGAGGCAGTGACCGGCATCCTGCATGCTGAGATCAACGCCCACGCTCGCTGGATATACTCACTGGACATTGCTCCTTTTTCTGGGCTGCTTCTGTCTGCTGCTGAGGACTCTCTGGTCAGGGTGTGGCACCTGACAATGACCCCAGAGACCAACAGTGTTGAGGTTGTCCATTTGCACAATGAGTGTGTGACGGACACTCAAATATGTGGCGCCAAGTTCTGTGACGGCGATGGTTATGCTTTTGCAGTGACAGGCTATGACCTGAGTGAGATTATCCGTTACACACAGTCGTAGGACTTTGCTTTCATTGAAGCTGAGTATACTATTAATGTGAATTTGGTATGTTAGAGTGTTTCTGGAAAGATAACATGACCCAGGGGAAACAGAGTCAAAAGTGGCCGGGTCAGGGTCAGGTTGACACGGACGGGGGTATCTAACATAATCTGGATTCATGGCATTTCTGTCTCTAGGGCCTATATCTACAAAGGGTAGAAGGAGATTAGCATATAACAAAATAATGCAAAAGTAATCTGTTAAAGTTTCTATGAATTtttttaagtacaaatgtttaCACGTATGTGAATGTAGTTTTTGAAAGTTACAAAGATTCTATTATTCTTTCTGATATAATTATTGTTTCAAGCAGCTGTACCAATAAACATTTTTGTGAAGACA
>XM_039804384.1
CGCAAGGATGACGTCTTACGTAGAAGTAGTGGCGTTGTCTCTATGGCTGCAGACGACGCGGAGGTAATCCTGTTGCTAACAAGAGCTAAAAAGACTGACACCAGATCACCTTCTGCCATTTCAACAAACCGCTCTGCCAAGAGAAGACCGCTCGATGTATCACAAAGAGAAGAGCATCCAGGTCAAAAACAGCGCCTCGGCGCTGTACAACAACCTCGGCGTGCTACGCATCGCCCCGCGGCATCTCACCTACTTCACGGTGGTCCATGCTAACGTGGTCAACATGGTCAGCGCGTCCTGGGACGGCCTCAACTATTCCCACCGCCAGCTGCAGTCCAAGGAGCCCAATGTCGCCACAAGCACATCGCTCATCATGCAGGCTGCGTTTTGTCCTCTGCCCTCTCGTGATCTGCTGGTGGTGACCTCTCAGAAAGGCATCCAGATGTATGAATCTGATGGCTCCATCATGGTGTACTGGCATGCACTCGATACTCCGGAAACACCTACAGCACAGGCCGTATTTTCTCGGGGGATATCAGCAGTGCGGGAGAGTTATATATGTGTGGgCGTTTCATCCGGTGCAATTCTAGTATTTGATGTTCCCAGTAAAGGCAGTAATATTACCCTGTCTGAGGTTCTGAAGGAGCACAAGGAGTCCATCACTGACATGGCCCCGGAGTGCTCTGGCAGCCAGGAGTGCATTGCTGATCTGGTCAGTGCAGACGATGGGGgcaacctgtgtgtgtggaagtCTGGGGAGGACTTTCAGCTGCTCAACAACATCCCCGGCTTTGATATAAGCTGCCCATCTGTCAAGTTGTGGAAAGGCACAGTGGTGGCAGGTTATGGCACAGGCCAGATTCGTCTCTATGAGGCAGTGACCGGCATCCTGCATGCTGAGATCAACGCCCACGCTCGCTGGATATACTCACTGGACATTGCTCCTTTTTCTGGGCTGCTTCTGTCTGCTGCTGAGGACTCTCTGGTCAGGGTGTGGCACCTGACAATGACCCCAGAGACCAACAGTGTTGAGGTTGTCCATTTGCACAATGAGTGTGTGACGGACACTCAAATATGTGGCGCCAAGTTCTGTGACGGCGATGGTTATGCTTTTGCAGTGACAGGCTATGACCTGAGTGAGATTATCCGTTACACACAGTCGTAGGACTTTGCTTTCATTGAAGCTGAGTATACTATTAATGTGAATTTGGTATGTTAGAGTGTTTCTGGAAAGATAACATGACCCAGGGGAAACAGAGTCAAAAGTGGCCGGGTCAGGGTCAGGTTGACACGGACGGGGGTATCTAACATAATCTGGATTCATGGCATTTCTGTCTCTAGGGCCTATATCTACAAAGGGTAGAAGGAGATTAGCATATAACAAAATAATGCAAAAGTAATCTGTTAAAGTTTCTATGAATTtttttaagtacaaatgtttaCACGTATGTGAATGTAGTTTTTGAAAGTTACAAAGATTCTATTATTCTTTCTGATATAATTATTGTTTCAAGCAGCTGTACCAATAAACATTTTTGTGAAGACA
>XM_039804385.1
CGTTTACGTTAACTTTATATGCAAGGGTCGACAACGACAGCGCCAATAGAGGCTGGACCAATTGTTATGTAATCTAAAGCAATAGTATGTGCAATGTGTCTCACAAAAGTAACGGTGTCCTATTTTATTTACGCTGCGTTATTGCATTTGGTTTCTTGATACCATAACAAGACTGACACCAGATCACCTTCTGCCATTTCAACAAACCGCTCTGCCAAGAGAAGACCGCTCGATGTATCACAAAGAGAAGAGCATCCAGGTCAAAAACAGCGCCTCGGCGCTGTACAACAACCTCGGCGTGCTACGCATCGCCCCGCGGCATCTCACCTACTTCACGGTGGTCCATGCTAACGTGGTCAACATGGTCAGCGCGTCCTGGGACGGCCTCAACTATTCCCACCGCCAGCTGCAGTCCAAGGAGCCCAATGTCGCCACAAGCACATCGCTCATCATGCAGGCTGCGTTTTGTCCTCTGCCCTCTCGTGATCTGCTGGTGGTGACCTCTCAGAAAGGCATCCAGATGTATGAATCTGATGGCTCCATCATGGTGTACTGGCATGCACTCGATACTCCGGAAACACCTACAGCACAGGCCGTATTTTCTCGGGGGATATCAGCAGTGCGGGAGAGTTATATATGTGTGGgCGTTTCATCCGGTGCAATTCTAGTATTTGATGTTCCCAGTAAAGGCAGTAATATTACCCTGTCTGAGGTTCTGAAGGAGCACAAGGAGTCCATCACTGACATGGCCCCGGAGTGCTCTGGCAGCCAGGAGTGCATTGCTGATCTGGTCAGTGCAGACGATGGGGgcaacctgtgtgtgtggaagtCTGGGGAGGACTTTCAGCTGCTCAACAACATCCCCGGCTTTGATATAAGCTGCCCATCTGTCAAGTTGTGGAAAGGCACAGTGGTGGCAGGTTATGGCACAGGCCAGATTCGTCTCTATGAGGCAGTGACCGGCATCCTGCATGCTGAGATCAACGCCCACGCTCGCTGGATATACTCACTGGACATTGCTCCTTTTTCTGGGCTGCTTCTGTCTGCTGCTGAGGACTCTCTGGTCAGGGTGTGGCACCTGACAATGACCCCAGAGACCAACAGTGTTGAGGTTGTCCATTTGCACAATGAGTGTGTGACGGACACTCAAATATGTGGCGCCAAGTTCTGTGACGGCGATGGTTATGCTTTTGCAGTGACAGGCTATGACCTGAGTGAGATTATCCGTTACACACAGTCGTAGGACTTTGCTTTCATTGAAGCTGAGTATACTATTAATGTGAATTTGGTATGTTAGAGTGTTTCTGGAAAGATAACATGACCCAGGGGAAACAGAGTCAAAAGTGGCCGGGTCAGGGTCAGGTTGACACGGACGGGGGTATCTAACATAATCTGGATTCATGGCATTTCTGTCTCTAGGGCCTATATCTACAAAGGGTAGAAGGAGATTAGCATATAACAAAATAATGCAAAAGTAATCTGTTAAAGTTTCTATGAATTtttttaagtacaaatgtttaCACGTATGTGAATGTAGTTTTTGAAAGTTACAAAGATTCTATTATTCTTTCTGATATAATTATTGTTTCAAGCAGCTGTACCAATAAACATTTTTGTGAAGACA
>XM_039804386.1
CCTGTTGCTAACAAGAGCTAAAAAGGTGCTTCGTTTACGTTAACTTTATATGCAAGGGTCGACAACGACAGCGCCAATAGAGGCTGGACCAATTGTTATGTAATCTAAAGCAATAACTGACACCAGATCACCTTCTGCCATTTCAACAAACCGCTCTGCCAAGAGAAGACCGCTCGATGTATCACAAAGAGAAGAGCATCCAGGTCAAAAACAGCGCCTCGGCGCTGTACAACAACCTCGGCGTGCTACGCATCGCCCCGCGGCATCTCACCTACTTCACGGTGGTCCATGCTAACGTGGTCAACATGGTCAGCGCGTCCTGGGACGGCCTCAACTATTCCCACCGCCAGCTGCAGTCCAAGGAGCCCAATGTCGCCACAAGCACATCGCTCATCATGCAGGCTGCGTTTTGTCCTCTGCCCTCTCGTGATCTGCTGGTGGTGACCTCTCAGAAAGGCATCCAGATGTATGAATCTGATGGCTCCATCATGGTGTACTGGCATGCACTCGATACTCCGGAAACACCTACAGCACAGGCCGTATTTTCTCGGGGGATATCAGCAGTGCGGGAGAGTTATATATGTGTGGgCGTTTCATCCGGTGCAATTCTAGTATTTGATGTTCCCAGTAAAGGCAGTAATATTACCCTGTCTGAGGTTCTGAAGGAGCACAAGGAGTCCATCACTGACATGGCCCCGGAGTGCTCTGGCAGCCAGGAGTGCATTGCTGATCTGGTCAGTGCAGACGATGGGGgcaacctgtgtgtgtggaagtCTGGGGAGGACTTTCAGCTGCTCAACAACATCCCCGGCTTTGATATAAGCTGCCCATCTGTCAAGTTGTGGAAAGGCACAGTGGTGGCAGGTTATGGCACAGGCCAGATTCGTCTCTATGAGGCAGTGACCGGCATCCTGCATGCTGAGATCAACGCCCACGCTCGCTGGATATACTCACTGGACATTGCTCCTTTTTCTGGGCTGCTTCTGTCTGCTGCTGAGGACTCTCTGGTCAGGGTGTGGCACCTGACAATGACCCCAGAGACCAACAGTGTTGAGGTTGTCCATTTGCACAATGAGTGTGTGACGGACACTCAAATATGTGGCGCCAAGTTCTGTGACGGCGATGGTTATGCTTTTGCAGTGACAGGCTATGACCTGAGTGAGATTATCCGTTACACACAGTCGTAGGACTTTGCTTTCATTGAAGCTGAGTATACTATTAATGTGAATTTGGTATGTTAGAGTGTTTCTGGAAAGATAACATGACCCAGGGGAAACAGAGTCAAAAGTGGCCGGGTCAGGGTCAGGTTGACACGGACGGGGGTATCTAACATAATCTGGATTCATGGCATTTCTGTCTCTAGGGCCTATATCTACAAAGGGTAGAAGGAGATTAGCATATAACAAAATAATGCAAAAGTAATCTGTTAAAGTTTCTATGAATTtttttaagtacaaatgtttaCACGTATGTGAATGTAGTTTTTGAAAGTTACAAAGATTCTATTATTCTTTCTGATATAATTATTGTTTCAAGCAGCTGTACCAATAAACATTTTTGTGAAGACA

Function

symbol description
wdr54 Orthologous to human WDR54 (WD repeat domain 54).

NR:

description
PREDICTED: WD repeat-containing protein 54

GO: NA

KEGG:

id description
K24749 WDR54; WD repeat-containing protein 54

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804383.1 False 1523 mRNA 0.49 10 16550250 16554512
XM_039804384.1 False 1546 mRNA 0.49 10 16550257 16554512
XM_039804385.1 True 1624 mRNA 0.47 10 16550356 16554512
XM_039804386.1 False 1568 mRNA 0.48 10 16550325 16554512

Neighbor

gene id symbol gene type direction distance location
LOC120560896 LOC103362386,LOC102790232,LOC102295658,LOC102208013 coding upstream 10065 16537126 ~ 16540185 (+)
LOC120561368 LOC104951926 coding upstream 45514 16495235 ~ 16504736 (+)
LOC120561387 NA coding upstream 57615 16487394 ~ 16492635 (+)
LOC120561386 NA coding upstream 66221 16477498 ~ 16484029 (+)
LOC120561380 NA coding upstream 82274 16461238 ~ 16467976 (+)
rhobtb4 LOC103362416,LOC103470451 coding downstream 17816 16572328 ~ 16616256 (+)
si:dkey-40c11.2 LOC104955420,LOC104955419 coding downstream 74009 16628521 ~ 16663697 (+)
mef2cb mef2c coding downstream 270303 16824815 ~ 16895188 (+)
tmem161b tmem161b coding downstream 404945 16959457 ~ 16978395 (+)
ccnh ccnh coding downstream 464065 17018577 ~ 17024968 (+)
G62033 aqp3,LOC103362379,LOC107393848,LOC105031174 non-coding upstream 36207 16512171 ~ 16514043 (+)
G61975 NA non-coding upstream 351379 16123200 ~ 16198871 (+)
LOC120560394 NA non-coding upstream 407451 16134594 ~ 16142799 (+)
G61968 NA non-coding upstream 493545 16035451 ~ 16056705 (+)
G62082 NA non-coding downstream 12970 16567482 ~ 16567714 (+)
G62085 NA non-coding downstream 55965 16610477 ~ 16620136 (+)
LOC120560795 NA non-coding downstream 342076 16896588 ~ 16943176 (+)
G62126 NA non-coding downstream 398413 16952925 ~ 16953637 (+)
G62184 NA non-coding downstream 523391 17077903 ~ 17084516 (+)
LOC120560897 LOC105925468 other upstream 16075 16532916 ~ 16534175 (+)
LOC120560890 NA other upstream 74345 16468310 ~ 16475905 (+)
fam172a fam172a,LOC102785942 other upstream 450766 15943698 ~ 16099484 (+)
mctp1a mctp1,LOC102782783 other upstream 773109 15636798 ~ 15777141 (+)
LOC120560526 NA other upstream 1017454 15518780 ~ 15532796 (+)
LOC120560947 edil3 other downstream 731136 17285648 ~ 17414595 (+)
tmem167a tmem167a,LOC103397084 other downstream 1013501 17568013 ~ 17572705 (+)
cmya5 cmya5,LOC106958347,LOC104953151 other downstream 1444174 17998686 ~ 18011030 (+)
thbs4a thbs4,LOC104953147,LOC106958346 other downstream 1460893 18015405 ~ 18029386 (+)
setbp1 setbp1,LOC102781608 other downstream 1520256 18074768 ~ 18129069 (+)

Expression


Co-expression Network