gp1bb (gp1bb,LOC102779926)


Basic Information

Item Value
gene id gp1bb
gene name gp1bb,LOC102779926
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 26472774 ~ 26475318 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804407.1
tcatatttgTAAGTGGTCTTTATCAGTGTGGGCCAGCTGgtagtaacacacacactcggcCTCTCAGAGAAGAGAAACACACGTCTTCTAAAGACACGCAGCACTGAAGtgATTGGTAACCATGAAGGGGCTTCTGTTCCTGTGTCTGCTCCCCTTGTTTGGAGCTCAAAGGTCATCAGCATGCCCCCACCTTTGTTCCTGTCATGGCAGTCAGGTGGACTGCAGCAGCAAgtctctcacctcctcctcgCTGCCCACCAGTTTCCCTGCAGGAACcacctccctccttctccacaACAACCGGCTGACGAGCCTCCCCAATGGGCTCCTGGATGACTTGACCTCCCTCCAGTCTGTCTCCCTTCATGGTAACCCCTGGGATTGTGACTGTGGCATCCTCTACCTGCGAGCCTGGCTACTGCGTCAGCCTGCCACCCTCACATCACACCTGGGCGCCAACTGCAGCTTCCCTCCTGGCCTGAGAGGGCGGCTGGTGGTGTATTTAACAGAGAAGGAGGTCCTGGATACCTGCCATTACTGGTACTGTGACTTGGCTCTGGCCTCgcaggtgtgtctgtttgtgtttgttgtggtgCAGGCGGCTCTGCTGGTGGCTCTCATCGTATTCCTGAGGAGGTTCGAGAGGCTGTCCAAAGAGGCAAGGAGAACCACGGAGGAGAGCTTCACAGCAGGGGAGAGTCTGAGGGACAATGAGTACGCTCCTTTGAAGGACAGCAGCATCTGAGATGGAGCTGTAATGATTTTTAgatacaaaagaagaaaaagaagagctgTTGTTATTTGCACATTGGAGAGAAAATGTCTCTCACATGCTTTCATGTTTCggactataaataaataaataaataaataaaagttcatTTTTATGCACAATCAGGtgacaaattaaaggaaaaCCCTGAATAAATGAGTAGAGAAAGAATAAATGCAGATGCTTACAAACAGGGAACCAGTGGACAGGTTTGAGAagtatgtaaataataatgtatCAAATCGTACAAACTGAGCACCTATAGGAGATTTGTGATGGCCCAACACCTCACTAAGACAGTTTATGttggtttttcttttaatttgtcaGCCATCTGTTTAACACCATAGAATaaactaaaagaaaagatagattAAACGTAACATACATTAGAGCCTGTCCAATATTGGAGTTTTGAGGCTGATGCCATTGTAGTTATTTGAGAGTAAAATTTCCAGTAACAATATACTGGATGGTATTCATTTTAATAACATTGACAGTTTTGGTAAGAATCCTTTCAATGTCGTTATTAAACAATTGTGACCCAAAATATGTACTGAGCTATTGAAAAATGAACTTGCCAGCGTTGTGTTGTGTAAAACTCTGTAAACTTCTATGAACACATCACTTTTTTACTTATCAGCCATACGTTCATACAGATTTATCTGTTTTCACATCAATTGATAATATTGCACATTGGTTGGCCTGCAATGCACATTTGTACTCATTACACTTGCTCACAATAACCTCTTTTTATGGACATGATAATGATGATCACATGAAGAAACGTCAAATTTCTATGTAAGGTTTGACAAGACAGATCCTTTCTGCCATGTGGTTGAAATATCAGATTTAAGTTTTCTATTTTCAAAGGCTCATGTGTTTgaaaactaataaataaaaatgtgttttagcaCCTTGA

Function

symbol description
gp1bb Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in Bernard-Soulier syndrome. Orthologous to human GP1BB (glycoprotein Ib platelet subunit beta).

NR:

description
LOW QUALITY PROTEIN: platelet glycoprotein Ib beta chain-like

GO: NA

KEGG:

id description
K06262 GP1BB, CD42c; platelet glycoprotein Ib beta chain

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804407.1 True 1694 mRNA 0.43 2 26472774 26475318

Neighbor

gene id symbol gene type direction distance location
sept5a sept5,LOC102226618 coding upstream 2072 26459626 ~ 26470702 (+)
zgc:63587 LOC101064433 coding upstream 25261 26415890 ~ 26447513 (+)
cdc45 cdc45 coding upstream 70113 26395798 ~ 26402661 (+)
plpp5 plpp5,LOC102777825 coding upstream 78373 26384409 ~ 26394401 (+)
sprn2 NA coding upstream 143846 26324749 ~ 26328928 (+)
dhx37 dhx37 coding downstream 870 26476188 ~ 26488401 (+)
ufd1l ufd1l coding downstream 14003 26489321 ~ 26493564 (+)
acaa2 acaa2 coding downstream 24255 26499573 ~ 26505004 (+)
rpl6 rpl6 coding downstream 31327 26506645 ~ 26511245 (+)
vdac3 vdac3 coding downstream 67708 26543026 ~ 26553731 (+)
G64764 NA non-coding upstream 150818 26303850 ~ 26321956 (+)
G64677 NA non-coding upstream 543616 25928924 ~ 25929158 (+)
G64663 NA non-coding upstream 550386 25922163 ~ 25922388 (+)
G64658 NA non-coding upstream 554681 25917765 ~ 25918093 (+)
G64657 NA non-coding upstream 555298 25917187 ~ 25917476 (+)
G64834 NA non-coding downstream 37147 26512465 ~ 26514759 (+)
G64836 polb non-coding downstream 56434 26531752 ~ 26533420 (+)
G64838 polb non-coding downstream 59694 26535012 ~ 26537695 (+)
G64839 NA non-coding downstream 62950 26538268 ~ 26538541 (+)
G64840 NA non-coding downstream 63340 26538658 ~ 26540223 (+)
G64814 cldn5,LOC103357131 other upstream 58177 26412869 ~ 26414597 (+)
nsd3 whsc1l1 other upstream 88931 26359120 ~ 26383843 (+)
LOC120560359 NA other upstream 544178 25926087 ~ 25928596 (+)
LOC120560031 LOC104941040,LOC103357154,LOC102795853 other upstream 557197 25914279 ~ 25915577 (+)
LOC120561182 LOC104948667,LOC104930137,LOC103397628,LOC103366370,LOC107092578,LOC102226292,LOC106956829,LOC106919698,LOC103470079,LOC103141747 other upstream 776198 25684964 ~ 25696576 (+)
c6h22orf39 clg12h22orf39 other downstream 18966 26494284 ~ 26496987 (+)
cltcl1 LOC100691387,LOC103359525 other downstream 138919 26614237 ~ 26644167 (+)
si:dkey-178e17.1 slc25a1,LOC100697273,LOC101470788,LOC103359526,LOC102784907,LOC107394264,LOC103145904 other downstream 169343 26644661 ~ 26661895 (+)
ndufs4 ndufs4 other downstream 536892 27012210 ~ 27039599 (+)
G65084 lipg other downstream 729916 27205234 ~ 27370959 (+)

Expression


Co-expression Network