LOC120561352 (gcnt4)


Basic Information

Item Value
gene id LOC120561352
gene name gcnt4
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 3311067 ~ 3315203 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804436.1
GTAAATGTATCGGGTGGCGGTGATGTGCGGGCAGGGGGCGGACTGCTGCCGGCCGGCCCGGACTCTCCCCCTGCCACTCCTCTGGACGGCTCAGTCCGCGATGGAGCCCGGGACATGAGAGCACACACACGGGACTCGCTCTCTTCACGCGTGGGGTACTGATGTGGAAGTGTGGGAGAAGCGTGCATGGCTCGAGAGACGCTCAAAGACACCTTTAGAGAGCAAGAATGAAAATAAGATGTTCCCACTACACACATAGATTGAGACACAGGTGCTTcctgttttctctgtctctgctggCGGTCTGTCTGCTCAAGCTGGTCTACATCAAAGTGACGGTGAGGGATAGCGTCTACATCCAGCCCTATGGAATCACTGTCAGCTTCTCCAGCACCCACAACCACAGGTATGACATCAACTGCACGGCAATCTACGAGCTGGACCCTGTGGAGATCGGCAAAGCTCTCCAGATCAAACGGAAAGCCATTGTTGACGTGGACGATGACAGCACCGTGAGTCTGACCTCGGACTGCCAAACCTTTCTCAAAGCACGGGGTTACAATGAGGCTCCGGTGTCTGCTGCAGAGCGCAGCTTCCCATTGGCTTACTCCCTGGTGGTGCATAAGAACGCCCCCATGGTGGAGCGAATCCTTCACGCTATCTATGCACCGCACAACATCTACTGCATCCACTATGACCAGAAGTCCTCTCCAGCATTCATAAAGGCCATCACCAACCTGGCTCAGTGCACTCCAAATGTGTTCATCGCCTCTAAACTGGAGTCTGTGGAATATGCCCACATCAGCAGGCTGAATGCCGACCTGAACTGCCTCTCTGACCTgctgaggtcagaggtcaactgGAAGTATGTCATCAACCTGTGTGGCCAGGACTTTCCTCTCAAGTCCAACTTTGAGCTGATGCTGGAGCTGAAGCAGCTGAACGGCAGCAACATGCTGGAGTCCAGCCGGCCCAGCGGACTCAAGAAGCAGCGCTTCAGCTTCCAGCACCAGCTGAAGAACGTGCCTTTTGAGTACCGGCGTATACCGGTCAAAACCACGGTGCTCAAAGATGCTCCTCCTCACGACATCGAGATGTTCATCGGCAGCGCTTACTTTGTCCTGTCACGGGATTTTGTAAATTACATCAGCAGCAGCCAGGTGGCAAAGGACTTCCTGGCATGGTCAGCTGACACATACTCACCAGATGAACACTTCTGGGCCACCCTGGTCAGGGTCCCCGGGGTCCCGGGGCACATTCCCAGGTCCGAGGCTGACGTTACGGATCTGAGGAGCAAAACACGACTAGTCAAGTGGAACTATTTAGAAGGAAATCTTTACCCAGCATGCACAGGTACACACATGCGCAGCGTTTGCATCTACGGAGCGGCTGAACTTCGCTGGCTCCTCAACTATGGCCACTGGTTTGCTAACAAATTTGACCCCAAAGTGGACCCGATCCTGATTAAGTGTTTAGAGGAGAAGCTGATGGAAAAACGTCAAAACGTGCAAACATGACACTGATGCGAACAGGAAACGTGACGACGAGCGCCAGTGTTTATTCTGTTGTTAGGCAAAGGTGCAAAATGACATCAGAGTTCACCGACTCAGTCATTGGACCCAAGCACAGCTCTGAGATGCAGGCACTTGGCTTGAGTATATTTTCGTTTTGTTAATTAGAAAACATTGAACTTGTTAGGATACAACATGTGTCTGATGGCTTCtaattactttgcagattacGATTTCTCCAGCAAACACAATGAGGTCATAAAATGTCTGAACCACCTGCAGCAGTAATGTACAGTGGGAAAGAGATtgttcttttacttttatttaaaaggttACTTTATATTTGACTAATATTTCTCAGTATTGCTGCACCTGCTCAGCAGTAAACAGCTTTTCCACATTATGTCAGTCTAACGTCTAACTACACGAGGCATTTTGTCTGAAACAGAAGGAAACGAAAAAGTGCCTTTGTCTAAAAGAATACTGGATTGTTTCAGGAAATGCCATCTTAAAATCAAGTGCCACTGGACATCCCATCTGAACACAGGCTCCATGTTGTTTTAAATACCAAAGAGCCATGTTGTTCTCGTGTTTTCACTAAATGAAATGATCCACAGCGTTGTCTTTTAGTTGTTTTTGACATGAAGATATAAAGTGATTTGAAAAAGTTTA
>XM_039804437.1
CTCTTCACGCGTGGGGTAAGTTCTCTGCTCCTCTGGTCGGCATTTGGTTAAGGAAGCGTTACCGGATGTACACAGAGTATTTCAGCTCGTCATCTTTCAGACGCCTGGTGCGTAGTGAGCAAGTACTGATGTGGAAGTGTGGGAGAAGCGTGCATGGCTCGAGAGACGCTCAAAGACACCTTTAGAGAGCAAGAATGAAAATAAGATGTTCCCACTACACACATAGATTGAGACACAGGTGCTTcctgttttctctgtctctgctggCGGTCTGTCTGCTCAAGCTGGTCTACATCAAAGTGACGGTGAGGGATAGCGTCTACATCCAGCCCTATGGAATCACTGTCAGCTTCTCCAGCACCCACAACCACAGGTATGACATCAACTGCACGGCAATCTACGAGCTGGACCCTGTGGAGATCGGCAAAGCTCTCCAGATCAAACGGAAAGCCATTGTTGACGTGGACGATGACAGCACCGTGAGTCTGACCTCGGACTGCCAAACCTTTCTCAAAGCACGGGGTTACAATGAGGCTCCGGTGTCTGCTGCAGAGCGCAGCTTCCCATTGGCTTACTCCCTGGTGGTGCATAAGAACGCCCCCATGGTGGAGCGAATCCTTCACGCTATCTATGCACCGCACAACATCTACTGCATCCACTATGACCAGAAGTCCTCTCCAGCATTCATAAAGGCCATCACCAACCTGGCTCAGTGCACTCCAAATGTGTTCATCGCCTCTAAACTGGAGTCTGTGGAATATGCCCACATCAGCAGGCTGAATGCCGACCTGAACTGCCTCTCTGACCTgctgaggtcagaggtcaactgGAAGTATGTCATCAACCTGTGTGGCCAGGACTTTCCTCTCAAGTCCAACTTTGAGCTGATGCTGGAGCTGAAGCAGCTGAACGGCAGCAACATGCTGGAGTCCAGCCGGCCCAGCGGACTCAAGAAGCAGCGCTTCAGCTTCCAGCACCAGCTGAAGAACGTGCCTTTTGAGTACCGGCGTATACCGGTCAAAACCACGGTGCTCAAAGATGCTCCTCCTCACGACATCGAGATGTTCATCGGCAGCGCTTACTTTGTCCTGTCACGGGATTTTGTAAATTACATCAGCAGCAGCCAGGTGGCAAAGGACTTCCTGGCATGGTCAGCTGACACATACTCACCAGATGAACACTTCTGGGCCACCCTGGTCAGGGTCCCCGGGGTCCCGGGGCACATTCCCAGGTCCGAGGCTGACGTTACGGATCTGAGGAGCAAAACACGACTAGTCAAGTGGAACTATTTAGAAGGAAATCTTTACCCAGCATGCACAGGTACACACATGCGCAGCGTTTGCATCTACGGAGCGGCTGAACTTCGCTGGCTCCTCAACTATGGCCACTGGTTTGCTAACAAATTTGACCCCAAAGTGGACCCGATCCTGATTAAGTGTTTAGAGGAGAAGCTGATGGAAAAACGTCAAAACGTGCAAACATGACACTGATGCGAACAGGAAACGTGACGACGAGCGCCAGTGTTTATTCTGTTGTTAGGCAAAGGTGCAAAATGACATCAGAGTTCACCGACTCAGTCATTGGACCCAAGCACAGCTCTGAGATGCAGGCACTTGGCTTGAGTATATTTTCGTTTTGTTAATTAGAAAACATTGAACTTGTTAGGATACAACATGTGTCTGATGGCTTCtaattactttgcagattacGATTTCTCCAGCAAACACAATGAGGTCATAAAATGTCTGAACCACCTGCAGCAGTAATGTACAGTGGGAAAGAGATtgttcttttacttttatttaaaaggttACTTTATATTTGACTAATATTTCTCAGTATTGCTGCACCTGCTCAGCAGTAAACAGCTTTTCCACATTATGTCAGTCTAACGTCTAACTACACGAGGCATTTTGTCTGAAACAGAAGGAAACGAAAAAGTGCCTTTGTCTAAAAGAATACTGGATTGTTTCAGGAAATGCCATCTTAAAATCAAGTGCCACTGGACATCCCATCTGAACACAGGCTCCATGTTGTTTTAAATACCAAAGAGCCATGTTGTTCTCGTGTTTTCACTAAATGAAATGATCCACAGCGTTGTCTTTTAGTTGTTTTTGACATGAAGATATAAAGTGATTTGAAAAAGTTTA
>XM_039804438.1
TGCTCCTCTGGTCGGCATTTGGTTAAGGAAGCGTTACCGGATGTACACAGAGTATTTCAGCTCGTCATCTTTCAGACGCCTGGTACTGATGTGGAAGTGTGGGAGAAGCGTGCATGGCTCGAGAGACGCTCAAAGACACCTTTAGAGAGCAAGAATGAAAATAAGATGTTCCCACTACACACATAGATTGAGACACAGGTGCTTcctgttttctctgtctctgctggCGGTCTGTCTGCTCAAGCTGGTCTACATCAAAGTGACGGTGAGGGATAGCGTCTACATCCAGCCCTATGGAATCACTGTCAGCTTCTCCAGCACCCACAACCACAGGTATGACATCAACTGCACGGCAATCTACGAGCTGGACCCTGTGGAGATCGGCAAAGCTCTCCAGATCAAACGGAAAGCCATTGTTGACGTGGACGATGACAGCACCGTGAGTCTGACCTCGGACTGCCAAACCTTTCTCAAAGCACGGGGTTACAATGAGGCTCCGGTGTCTGCTGCAGAGCGCAGCTTCCCATTGGCTTACTCCCTGGTGGTGCATAAGAACGCCCCCATGGTGGAGCGAATCCTTCACGCTATCTATGCACCGCACAACATCTACTGCATCCACTATGACCAGAAGTCCTCTCCAGCATTCATAAAGGCCATCACCAACCTGGCTCAGTGCACTCCAAATGTGTTCATCGCCTCTAAACTGGAGTCTGTGGAATATGCCCACATCAGCAGGCTGAATGCCGACCTGAACTGCCTCTCTGACCTgctgaggtcagaggtcaactgGAAGTATGTCATCAACCTGTGTGGCCAGGACTTTCCTCTCAAGTCCAACTTTGAGCTGATGCTGGAGCTGAAGCAGCTGAACGGCAGCAACATGCTGGAGTCCAGCCGGCCCAGCGGACTCAAGAAGCAGCGCTTCAGCTTCCAGCACCAGCTGAAGAACGTGCCTTTTGAGTACCGGCGTATACCGGTCAAAACCACGGTGCTCAAAGATGCTCCTCCTCACGACATCGAGATGTTCATCGGCAGCGCTTACTTTGTCCTGTCACGGGATTTTGTAAATTACATCAGCAGCAGCCAGGTGGCAAAGGACTTCCTGGCATGGTCAGCTGACACATACTCACCAGATGAACACTTCTGGGCCACCCTGGTCAGGGTCCCCGGGGTCCCGGGGCACATTCCCAGGTCCGAGGCTGACGTTACGGATCTGAGGAGCAAAACACGACTAGTCAAGTGGAACTATTTAGAAGGAAATCTTTACCCAGCATGCACAGGTACACACATGCGCAGCGTTTGCATCTACGGAGCGGCTGAACTTCGCTGGCTCCTCAACTATGGCCACTGGTTTGCTAACAAATTTGACCCCAAAGTGGACCCGATCCTGATTAAGTGTTTAGAGGAGAAGCTGATGGAAAAACGTCAAAACGTGCAAACATGACACTGATGCGAACAGGAAACGTGACGACGAGCGCCAGTGTTTATTCTGTTGTTAGGCAAAGGTGCAAAATGACATCAGAGTTCACCGACTCAGTCATTGGACCCAAGCACAGCTCTGAGATGCAGGCACTTGGCTTGAGTATATTTTCGTTTTGTTAATTAGAAAACATTGAACTTGTTAGGATACAACATGTGTCTGATGGCTTCtaattactttgcagattacGATTTCTCCAGCAAACACAATGAGGTCATAAAATGTCTGAACCACCTGCAGCAGTAATGTACAGTGGGAAAGAGATtgttcttttacttttatttaaaaggttACTTTATATTTGACTAATATTTCTCAGTATTGCTGCACCTGCTCAGCAGTAAACAGCTTTTCCACATTATGTCAGTCTAACGTCTAACTACACGAGGCATTTTGTCTGAAACAGAAGGAAACGAAAAAGTGCCTTTGTCTAAAAGAATACTGGATTGTTTCAGGAAATGCCATCTTAAAATCAAGTGCCACTGGACATCCCATCTGAACACAGGCTCCATGTTGTTTTAAATACCAAAGAGCCATGTTGTTCTCGTGTTTTCACTAAATGAAATGATCCACAGCGTTGTCTTTTAGTTGTTTTTGACATGAAGATATAAAGTGATTTGAAAAAGTTTA

Function

symbol description
gcnt4 Predicted to enable acetylglucosaminyltransferase activity. Predicted to be involved in O-glycan processing and carbohydrate metabolic process. Predicted to act upstream of or within several processes, including inter-male aggressive behavior; kidney morphogenesis; and thyroid hormone metabolic process. Predicted to be located in Golgi membrane.

NR:

description
PREDICTED: beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4

GO: NA

KEGG:

id description
K09663 GCNT4; beta-1,6-N-acetylglucosaminyltransferase 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804436.1 True 2183 mRNA 0.49 3 3311067 3315203
XM_039804437.1 False 2150 mRNA 0.48 3 3311067 3315063
XM_039804438.1 False 2110 mRNA 0.48 3 3311067 3315038

Neighbor

gene id symbol gene type direction distance location
LOC120561362 NA coding downstream 17760 3272451 ~ 3293307 (-)
traf2a traf1,LOC106956159,LOC103356465,LOC106930528,LOC103141905,LOC108249884,LOC102784265 coding downstream 99068 3196486 ~ 3211999 (-)
b3galt8 NA coding downstream 263265 3045676 ~ 3047802 (-)
zgc:162952 LOC103356462,LOC104930869,LOC101468259,LOC102311328,LOC100693656 coding downstream 268811 3015609 ~ 3042256 (-)
LOC120561357 NA coding downstream 455364 2853308 ~ 2855703 (-)
LOC120561346 NA coding upstream 613 3315816 ~ 3354947 (-)
apba1a apba1 coding upstream 239870 3555073 ~ 3603158 (-)
ptar1 ptar1 coding upstream 291192 3606395 ~ 3621480 (-)
pias2 pias2 coding upstream 483829 3799032 ~ 3816820 (-)
ydjc ydjc coding upstream 515143 3830346 ~ 3844040 (-)
G58852 NA non-coding downstream 64670 3246081 ~ 3246397 (-)
G58818 NA non-coding downstream 148940 3161885 ~ 3162127 (-)
G58807 NA non-coding downstream 297686 3011390 ~ 3013381 (-)
G58806 NA non-coding downstream 311652 2999199 ~ 2999415 (-)
G58748 NA non-coding downstream 437438 2873355 ~ 2873629 (-)
G58922 NA non-coding upstream 120009 3435212 ~ 3467122 (-)
G58931 NA non-coding upstream 172760 3487963 ~ 3488550 (-)
G58932 NA non-coding upstream 174602 3489805 ~ 3490230 (-)
G58933 NA non-coding upstream 175517 3490720 ~ 3492557 (-)
G58935 NA non-coding upstream 181041 3496244 ~ 3496596 (-)
si:ch211-102c2.4 NA other downstream 71004 3232606 ~ 3240063 (-)
tnc tnc,LOC104930867,LOC103356464 other downstream 176518 3049669 ~ 3134549 (-)
LOC120561349 donson,LOC102310661 other downstream 464460 2834188 ~ 2846607 (-)
LOC120561394 LOC107097799,LOC103353613,LOC101077666 other downstream 618524 2690610 ~ 2692543 (-)
si:ch211-107p11.3 LOC103353652,LOC102075650,LOC108234931,LOC104950460 other downstream 621980 2685891 ~ 2689087 (-)
G58919 NA other upstream 81966 3397169 ~ 3397496 (-)
G58920 LOC106099046,LOC107687292,LOC107712180,LOC107663003 other upstream 100424 3415627 ~ 3416854 (-)
G58994 NA other upstream 373426 3688629 ~ 3689338 (-)
golph3a golph3,LOC103397487,LOC108249570 other upstream 894545 4209748 ~ 4224568 (-)
sub1b sub1 other upstream 1108946 4424149 ~ 4430090 (-)

Expression


Co-expression Network