LOC120561358 (LOC104949113)


Basic Information

Item Value
gene id LOC120561358
gene name LOC104949113
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 2884761 ~ 2889848 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804446.1
AGTGACTTCTCTCTGCAGCTCTTCACTCCTGTAGAGCTCCTGTTCAGCGTTGATCAGGTGGATTCTTCCTCTCAGCTGTTGATGGACAGAACAAAAGTCTCAGTGtccttcctcctcctgacttcTCTTCCTGCTCCCAGCTGTCTGTGGTCAGTCACACCAACACACTGCTCGCTGCAATTCGCTGGATTATCTGCCGCTGGATTATCTGATGCTGGATTATTTGACGCTGGATTATTGCTGCCTATAGCGAAGTTAAGTGTTTGAACGAACATAGTAACAGAGAGAAACTACCAGGAAGAATGAATCGCTGCTGTGTAAACTGCTCCAAAACTCTGCTGATACATCTCAACTTCCTGTGCTGGCTGTGCGGGGCGTTTGTGGTGGCGTTTGGGGAGTTCCAGATGATTCACTCCCAGTTTGCCTCCCTGGTCCCCAGCTTCTGGCCCGTGTACCCCGCCAACACGCTGGTGGTCAGCGGGACcattgtcatgtgtgtgtgttacctcgGAGTGTTAGGAGGCATGAAGGAGAACCGCTGCATGCTCATCACTTTCTTCGTCCTGCTCTTCATCCTGATGCTGGTGGAGCTGGCCATGGCCTGTGTGTTCCTGGTCTACAGCACCGAGATTGACACACACTTTGAGAAAGACCTGATGAAAAGCTTGGAGATCTACAGACAGTCCAGTCCAGAAAGCAACTCAACCATTAAAGATGACTTTGATGCTGTCCAGGACCTGTTCAGGTGCTGTGGAGTTCATGGTGTGGCGGACTGGAAGGGCGATGTCCCAGTGtcctgttgcagcagcagccccTGCAGCATGCTGCTCCACCCCCCCTGGCCAGAGGGTTGTCTCGTGAAACTGAGGAACTGGTTTGCCAGAAACTATCTGAACACAGGTGCAGGCGTTGTCACCATGTTTATCATACAGTTTATTTGTCTGTCCATCACCGTCCCTCTCTTTTGCCACTTCAGTCGACGTGGATTGGGTTACCAGTGATAAACTGGACTTGCAACTTACAGTGACTTCCCGCATGTCAACAGGTTGCTTTTCCCTGTATCAAAGTTTTATTAATCTGCTTCAAATGCCCAAAAGGTTGTCGTTTGCAATGAACCAGGGATGAACTGAGGATCGctattgaaaatgttgtatgATCATtgaatgtgaaatgaaaaacatAATATGAGACATTTAATTGGTAGATAAGTTATGACATGATAATGTAAGGCCTGTCCTAACCCACACAGACCCAAGAGACCTGTTCCCACTGTGAGTGCTAGGCTGCCCTTCCCAGTTCGTTGGACTACAAGAACATTTTAAACTAGACCCAAACACTAGACGTAGACAcactagaccaggggtcaccaaaatggtgcccgcgggcaccaggtagcccccaaggaccacatgagtagccctcaggcctgttctaaaaatgaaaattgaatattga
>XM_039804447.1
TTGCCATATCAAACAGTGGTGTCCTGTAAACACTCTTCTCCTGTTTGATTGCTACATCATCTGCTCCACATCATGTCTTTCAGTGTTTGAACGAACATAGTAACAGAGAGAAACTACCAGGAAGAATGAATCGCTGCTGTGTAAACTGCTCCAAAACTCTGCTGATACATCTCAACTTCCTGTGCTGGCTGTGCGGGGCGTTTGTGGTGGCGTTTGGGGAGTTCCAGATGATTCACTCCCAGTTTGCCTCCCTGGTCCCCAGCTTCTGGCCCGTGTACCCCGCCAACACGCTGGTGGTCAGCGGGACcattgtcatgtgtgtgtgttacctcgGAGTGTTAGGAGGCATGAAGGAGAACCGCTGCATGCTCATCACTTTCTTCGTCCTGCTCTTCATCCTGATGCTGGTGGAGCTGGCCATGGCCTGTGTGTTCCTGGTCTACAGCACCGAGATTGACACACACTTTGAGAAAGACCTGATGAAAAGCTTGGAGATCTACAGACAGTCCAGTCCAGAAAGCAACTCAACCATTAAAGATGACTTTGATGCTGTCCAGGACCTGTTCAGGTGCTGTGGAGTTCATGGTGTGGCGGACTGGAAGGGCGATGTCCCAGTGtcctgttgcagcagcagccccTGCAGCATGCTGCTCCACCCCCCCTGGCCAGAGGGTTGTCTCGTGAAACTGAGGAACTGGTTTGCCAGAAACTATCTGAACACAGGTGCAGGCGTTGTCACCATGTTTATCATACAGTTTATTTGTCTGTCCATCACCGTCCCTCTCTTTTGCCACTTCAGTCGACGTGGATTGGGTTACCAGTGATAAACTGGACTTGCAACTTACAGTGACTTCCCGCATGTCAACAGGTTGCTTTTCCCTGTATCAAAGTTTTATTAATCTGCTTCAAATGCCCAAAAGGTTGTCGTTTGCAATGAACCAGGGATGAACTGAGGATCGctattgaaaatgttgtatgATCATtgaatgtgaaatgaaaaacatAATATGAGACATTTAATTGGTAGATAAGTTATGACATGATAATGTAAGGCCTGTCCTAACCCACACAGACCCAAGAGACCTGTTCCCACTGTGAGTGCTAGGCTGCCCTTCCCAGTTCGTTGGACTACAAGAACATTTTAAACTAGACCCAAACACTAGACGTAGACAcactagaccaggggtcaccaaaatggtgcccgcgggcaccaggtagcccccaaggaccacatgagtagccctcaggcctgttctaaaaatgaaaattgaatattga

Function

NR:

description
PREDICTED: leukocyte surface antigen CD53-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804446.1 True 1455 mRNA 0.49 8 2884761 2889848
XM_039804447.1 False 1278 mRNA 0.48 7 2885347 2889848

Neighbor

gene id symbol gene type direction distance location
mlec mlec coding upstream 222311 2656511 ~ 2662450 (+)
cabp1a cabp1,LOC100709699,LOC102206763,LOC102781601,LOC104946293 coding upstream 230164 2640152 ~ 2654597 (+)
asphd2 asphd2 coding upstream 250078 2630504 ~ 2634683 (+)
lrrc75ba lrrc75b,LOC104956515,LOC102775864 coding upstream 267788 2600890 ~ 2616973 (+)
anapc5 anapc5,LOC102800026 coding upstream 307711 2560749 ~ 2577050 (+)
LOC120561351 NA coding downstream 7692 2897540 ~ 2913826 (+)
nsmfb nsmf,LOC101467740,LOC102197052,LOC102311847 coding downstream 48181 2938029 ~ 2993038 (+)
rabl6b rabl6 coding downstream 324741 3214589 ~ 3234118 (+)
imp4 imp4 coding downstream 350281 3240129 ~ 3245982 (+)
zfr zfr,LOC103397483,LOC102308294 coding downstream 357606 3247454 ~ 3270107 (+)
G58745 NA non-coding upstream 35911 2848391 ~ 2848850 (+)
LOC120561364 NA non-coding upstream 55230 2821879 ~ 2829531 (+)
G58726 NA non-coding upstream 70230 2813924 ~ 2814531 (+)
G58723 NA non-coding upstream 73484 2810866 ~ 2811277 (+)
LOC120561363 NA non-coding upstream 80105 2803541 ~ 2804656 (+)
G58761 NA non-coding downstream 2528 2892376 ~ 2892715 (+)
G58778 NA non-coding downstream 152291 3042139 ~ 3042443 (+)
G58780 NA non-coding downstream 158907 3048755 ~ 3049029 (+)
G58793 NA non-coding downstream 183815 3073663 ~ 3074232 (+)
G58817 NA non-coding downstream 266214 3156062 ~ 3156295 (+)
lman2lb NA other upstream 900 2878374 ~ 2883861 (+)
dock5 dock5 other upstream 572096 2273678 ~ 2312665 (+)
lmx1bb lmx1b,LOC102213269,LOC100696266 other upstream 2046900 789405 ~ 837861 (+)
LOC120560799 NA other upstream 2672378 210742 ~ 212383 (+)
LOC120560521 tjp2 other downstream 545317 3435165 ~ 3522756 (+)
G59086 NA other downstream 1227431 4117279 ~ 4117631 (+)
G59172 sub1 other downstream 1534293 4424141 ~ 4429981 (+)
trnal-aag_1 NA other downstream 1542323 4432171 ~ 4432253 (+)
trnaq-uug_2 NA other downstream 1542820 4432668 ~ 4432739 (+)

Expression


Co-expression Network