fxn (fxn)


Basic Information

Item Value
gene id fxn
gene name fxn
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 3375881 ~ 3383580 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804455.1
CTCAAAGAAGCCGGCgcaggaagcagcagcagaagctcCAGCCTCCAGCATCCCCCAGCAGCCCCCAGGACAGTGGTGGACCCATCATAGGCTACAGTCATTGGGTGGACATCATGCTGTTCTTCACTAAGTCTCCATGTGTTTATTGGCAGATATGTCAGCTTGCGAACACACGGCTCAACACGGtgaacccacacacactcaggaaCCTGTTTACCCAGCTCAGGAGCTTGTCTCGCCCGTCCACTGCGCATGCGCTGCAGCCCATCTGTCGGCCAAACAACAAATGGTTTGAGAGCAGACTTGATGGTGACAGGTGGAGGAAAAACATCCATGTGACGTCACTAAGGCTGGAGAAACCCCCCGCTGTTCAGACCAGTGAGCTGTCTGAAGCAGCGTATGAGAAGCTGGCAGACGAGACGCTGGACGCTCTGACTGACTATTTTGAAGACCTGATGGATGAAGCTTTCACTGGAGCAGAGTACGATGTCTTGTTCTCTAGCGGCGTGTTGACAGTGAAGCTGGGCAGGGAGCACGGCACCTACGTCATCAACaaacagacgccaaacaaacagATCTGGCTGTCTTCTCCCACCAGTGGACCGAAGCGTTACGACTGGACAGGTGAACGCTGGGTGTACTCTCATGATGGTCTGAGCCTCCACCAGCTGCTCTCTAAAGAGTTCTCCATCATCTTCAGTAAAACCATGGACCTATCTGACCTGCCATACTCCTGAGGTGCCACAGCCACTAATGACTGCCTACGGTGGGACTACTGCGACTCATCCAACCACTGTCAGATCCTATAGGAGCCAAAGATACACAGTATTTATACACAACTCTACAGTAACGTCGCAGTAAACGCCCTGAGGAGAGCAGCTGTATATAATGAGTGATCTATATGTGTTCTATAATAACGTATTGTTTGAGTTTATTTCatttacagcactttaaaaGCAAATGGGTTTGCACTAAAGTGCTTCAACAAAGACAGAcatgtatattatgtatgtatacagGCATAAAACCGATGTATGTGCATAAATATTGtcattttattaaatatttgacAAACCTTCA

Function

symbol description
fxn Predicted to enable several functions, including 2 iron, 2 sulfur cluster binding activity; ferroxidase activity; and iron ion binding activity. Predicted to be involved in cellular iron ion homeostasis and iron incorporation into metallo-sulfur cluster. Predicted to act upstream of or within several processes, including heme biosynthetic process; iron ion homeostasis; and iron-sulfur cluster assembly. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in Friedreich ataxia; Friedreich ataxia 1; and type 2 diabetes mellitus. Orthologous to human FXN (frataxin).

NR:

description
frataxin, mitochondrial

GO: NA

KEGG:

id description
K19054 FXN; frataxin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804455.1 True 1080 mRNA 0.48 6 3375881 3383580

Neighbor

gene id symbol gene type direction distance location
hmgcra hmgcr coding upstream 4381 3358143 ~ 3371500 (+)
zfr zfr,LOC103397483,LOC102308294 coding upstream 105774 3247454 ~ 3270107 (+)
imp4 imp4 coding upstream 129899 3240129 ~ 3245982 (+)
rabl6b rabl6 coding upstream 141763 3214589 ~ 3234118 (+)
nsmfb nsmf,LOC101467740,LOC102197052,LOC102311847 coding upstream 382843 2938029 ~ 2993038 (+)
fam189a2 LOC104953220 coding downstream 141727 3525307 ~ 3547333 (+)
mamdc2a mamdc2 coding downstream 247156 3630736 ~ 3675225 (+)
arid3c LOC103046366,LOC105901092,LOC107676636,LOC107552548,LOC108438346 coding downstream 304465 3688045 ~ 3775673 (+)
LOC120561175 ube2l3,LOC106562742,LOC104961333,LOC107396654,LOC102226353,LOC107088009,LOC108248341 coding downstream 434742 3818322 ~ 3827427 (+)
rad17 rad17,LOC102794325 coding downstream 464899 3848479 ~ 3868576 (+)
G58819 NA non-coding upstream 210040 3165613 ~ 3165841 (+)
G58817 NA non-coding upstream 219586 3156062 ~ 3156295 (+)
G58793 NA non-coding upstream 301649 3073663 ~ 3074232 (+)
G58780 NA non-coding upstream 326852 3048755 ~ 3049029 (+)
G58778 NA non-coding upstream 333438 3042139 ~ 3042443 (+)
G58892 NA non-coding downstream 13573 3397153 ~ 3397790 (+)
G58893 NA non-coding downstream 31524 3415104 ~ 3415416 (+)
G58898 NA non-coding downstream 106211 3489791 ~ 3490092 (+)
G58899 NA non-coding downstream 111524 3495104 ~ 3495899 (+)
G58900 NA non-coding downstream 120871 3504451 ~ 3504749 (+)
lman2lb NA other upstream 492020 2878374 ~ 2883861 (+)
dock5 dock5 other upstream 1063216 2273678 ~ 2312665 (+)
lmx1bb lmx1b,LOC102213269,LOC100696266 other upstream 2538020 789405 ~ 837861 (+)
LOC120560799 NA other upstream 3163498 210742 ~ 212383 (+)
LOC120560521 tjp2 other downstream 51585 3435165 ~ 3522756 (+)
G59086 NA other downstream 733699 4117279 ~ 4117631 (+)
G59172 sub1 other downstream 1040561 4424141 ~ 4429981 (+)
trnal-aag_1 NA other downstream 1048591 4432171 ~ 4432253 (+)
trnaq-uug_2 NA other downstream 1049088 4432668 ~ 4432739 (+)

Expression


Co-expression Network