LOC120561371 (crybb3,LOC103469711,LOC102784487)


Basic Information

Item Value
gene id LOC120561371
gene name crybb3,LOC103469711,LOC102784487
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 14324930 ~ 14327512 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804461.1
TGCCCTCTAATGGCTCAACCCCACCAAACACCAAGTGGCACAGAAAAAGAGGGACACTACCACATCCTAGCAGGCCATAACCCAGTGGAGGAGCAGTGGATCAGGAGGATGTCGGAGCAGCAGAGTGCCCCGGAGCAGCTGGCTGCAGGGAAGAGCCAGGGTGGAGCTGGAGCCACATATAAGGTGTTGCTGTTTGAGTTTGAGAACTTCCAGGGCTGCAAGGCGGAGTTTTCATCAGATTGTAAAGATGTGACAGAGAAGGGACTGGAGAAGGTTGGATCTGTCATAGTTGAGTCAGGACCCTGGGCGGGTTATGATCGGCATGGCTTCACAGGGGAGCAGTTTATTCTGGAGAAGGGCGAATATCCACGCTGGGACACCTGGACCAACAGTCAGAACAGCTACTCCCTCTTGTCTCTAAGGCCACTCAAAGTGGACAGTGCCGAACACAAGCTACATCTGTACGAGAACCCTGGATTTACTGGAAGGAAGATGGAgattgttgatgatgatgtgcCCAGTTTGTGGGGCCACGGTTTTCAGGATCGTGTGGCGAGTGTCAAGGCTCTTAACGGAACATGGGTCGGCTACATGTATCCAGGCTACAGGGGGCGCCAGTTTATCTTCGAGAGAGGAGATTTCAAGCACTGGAACGACTGGGAGGCCCCTGCACCTCAGATCCAGTCTGTCCGACGTGTGCGGGACATGCAGTGGCACAAGAGGGGCTGTTTCACTGTCCCCGACCCAGCTCCGGTTCCCGGCCCAGGACCCGACCCCGACCCCGCCCCAGCACCTCCTGCCCCTCCTGCCACAGCTGGAGCCAGCTGAGCAGGATCCTCACACACCTCCCGCCCCCTCCCTCCCACAGCCTCACCCCACACTGCCGACAGTGCCTGCCCTCTGCCTTAACCTGACCATGGCAAACGCTGCTTGTGCCCAAAGAGGAGTGCCATGTATACGTTTCAGTGGCGAATAAAAGTTGTTTGACCTGGAGTTGGCCCCTTTTTGTTGGTGATGTCATAAGTCAAGATGGAAAATGGCTTTAACTGAAATAGTAAAGATTTGGAAAAACACTGTCAGAGATGTAAAACTGACATTTATGTGGAAataatgtagcctacatttggCAGATATTTTTCCTCAAGATAAACTGCAGATGTGTTTCGAATTAAATTCATTTTCGAGTcatgttttgccacttttgcTGCTTGTGTTTTCCCATTTTAGTCAGACAGCTGAAAGCCTCATCCAGCTTTAGGAGCACATGCAGTGAATATGTGGATATACGCATCTGCTTAACAGCAATGGAAGTGATGTCATACTTTATGTATGCTTGCTTATTAAAACAGAGTGCACTGCA
>XM_039804462.1
AAAACCTCACTCTGGACACAGTCGGTGTAATAAGTCCAATGCAATGGAGTTAGATGGTGCTGCACCGATTGGAGACACAGTGGAGGAGCAGTGGATCAGGAGGATGTCGGAGCAGCAGAGTGCCCCGGAGCAGCTGGCTGCAGGGAAGAGCCAGGGTGGAGCTGGAGCCACATATAAGGTGTTGCTGTTTGAGTTTGAGAACTTCCAGGGCTGCAAGGCGGAGTTTTCATCAGATTGTAAAGATGTGACAGAGAAGGGACTGGAGAAGGTTGGATCTGTCATAGTTGAGTCAGGACCCTGGGCGGGTTATGATCGGCATGGCTTCACAGGGGAGCAGTTTATTCTGGAGAAGGGCGAATATCCACGCTGGGACACCTGGACCAACAGTCAGAACAGCTACTCCCTCTTGTCTCTAAGGCCACTCAAAGTGGACAGTGCCGAACACAAGCTACATCTGTACGAGAACCCTGGATTTACTGGAAGGAAGATGGAgattgttgatgatgatgtgcCCAGTTTGTGGGGCCACGGTTTTCAGGATCGTGTGGCGAGTGTCAAGGCTCTTAACGGAACATGGGTCGGCTACATGTATCCAGGCTACAGGGGGCGCCAGTTTATCTTCGAGAGAGGAGATTTCAAGCACTGGAACGACTGGGAGGCCCCTGCACCTCAGATCCAGTCTGTCCGACGTGTGCGGGACATGCAGTGGCACAAGAGGGGCTGTTTCACTGTCCCCGACCCAGCTCCGGTTCCCGGCCCAGGACCCGACCCCGACCCCGCCCCAGCACCTCCTGCCCCTCCTGCCACAGCTGGAGCCAGCTGAGCAGGATCCTCACACACCTCCCGCCCCCTCCCTCCCACAGCCTCACCCCACACTGCCGACAGTGCCTGCCCTCTGCCTTAACCTGACCATGGCAAACGCTGCTTGTGCCCAAAGAGGAGTGCCATGTATACGTTTCAGTGGCGAATAAAAGTTGTTTGACCTGGAGTTGGCCCCTTTTTGTTGGTGATGTCATAAGTCAAGATGGAAAATGGCTTTAACTGAAATAGTAAAGATTTGGAAAAACACTGTCAGAGATGTAAAACTGACATTTATGTGGAAataatgtagcctacatttggCAGATATTTTTCCTCAAGATAAACTGCAGATGTGTTTCGAATTAAATTCATTTTCGAGTcatgttttgccacttttgcTGCTTGTGTTTTCCCATTTTAGTCAGACAGCTGAAAGCCTCATCCAGCTTTAGGAGCACATGCAGTGAATATGTGGATATACGCATCTGCTTAACAGCAATGGAAGTGATGTCATACTTTATGTATGCTTGCTTATTAAAACAGAGTGCACTGCA

Function

symbol description
crybb3 Predicted to be a structural constituent of eye lens. Predicted to be involved in lens development in camera-type eye and visual perception. Is expressed in eye and lens. Human ortholog(s) of this gene implicated in cataract 22 multiple types. Orthologous to human CRYBB3 (crystallin beta B3).

NR:

description
PREDICTED: beta-crystallin B3

GO: NA

KEGG:

id description
K23482 CRYB; beta-crystallin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804461.1 True 1360 mRNA 0.51 6 14324930 14327512
XM_039804462.1 False 1355 mRNA 0.51 6 14324930 14327421

Neighbor

gene id symbol gene type direction distance location
crybb2 crybb2,LOC108234953,LOC100703162 coding downstream 5412 14317597 ~ 14319518 (-)
ctu1 ctu1 coding downstream 7540 14314594 ~ 14317390 (-)
LOC120560975 pxn,LOC102314602,LOC102784766,LOC102212913,LOC101475765 coding downstream 12585 14289002 ~ 14312345 (-)
LOC120560399 LOC103369226,LOC100702093 coding downstream 64691 14255697 ~ 14260239 (-)
LOC120560956 LOC103141353,LOC103469718,LOC100701549,LOC106929229 coding downstream 76119 14246483 ~ 14248811 (-)
rnf10 rnf10,LOC102784202 coding upstream 37710 14365222 ~ 14374233 (-)
pop5 pop5 coding upstream 47144 14374656 ~ 14376857 (-)
hnf1a hnf1a coding upstream 65095 14392607 ~ 14399967 (-)
LOC120561207 NA coding upstream 117951 14445463 ~ 14448015 (-)
asgrl1 NA coding upstream 126576 14454088 ~ 14456312 (-)
G61425 NA non-coding downstream 10998 14313595 ~ 14313932 (-)
G61423 NA non-coding downstream 39043 14284175 ~ 14285887 (-)
G61422 NA non-coding downstream 42582 14281851 ~ 14282348 (-)
LOC120560401 atp5ib,atp5i,LOC106580450 non-coding downstream 70427 14252253 ~ 14254503 (-)
G61404 tnks non-coding downstream 91492 14219347 ~ 14233438 (-)
G61559 NA non-coding upstream 60011 14387523 ~ 14387739 (-)
G61564 msi1,LOC102299939,LOC108239862,LOC107687968,LOC107550984,LOC107712472 non-coding upstream 83885 14411397 ~ 14418905 (-)
G61566 NA non-coding upstream 89663 14417175 ~ 14423811 (-)
LOC120561033 NA non-coding upstream 133414 14460926 ~ 14466354 (-)
G61586 NA non-coding upstream 157730 14485242 ~ 14485537 (-)
G61264 NA other downstream 735598 13589039 ~ 13589332 (-)
LOC120561038 LOC102778062,LOC101486272,LOC102199534,LOC108245630 other downstream 1769645 12293707 ~ 12555285 (-)
LOC120561001 whrn,LOC102797690 other downstream 2263284 11901650 ~ 12061646 (-)
abca2 abca2 other downstream 2731270 11285385 ~ 11593660 (-)
G60715 NA other downstream 3135189 11189142 ~ 11189741 (-)
si:ch73-138n13.1 LOC102794857,LOC107084631 other upstream 639 14328151 ~ 14364326 (-)
trnaa-agc_14 NA other upstream 611463 14938975 ~ 14939047 (-)
trnaa-agc_15 NA other upstream 616984 14944496 ~ 14944568 (-)
trnae-cuc_15 NA other upstream 621247 14948759 ~ 14948830 (-)
trnas-gcu NA other upstream 623990 14951502 ~ 14951583 (-)

Expression


Co-expression Network