crybb2 (crybb2,LOC108234953,LOC100703162)


Basic Information

Item Value
gene id crybb2
gene name crybb2,LOC108234953,LOC100703162
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 14317597 ~ 14319518 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804463.1
ACTCTTGGCAGAGTTTCCACCCCTGGGCGTCCCGTATATATTGGGCTGATCGTGCCATCACAAACACACTGGCACAGACAGGTACTGTTTCATCTTTGCCGATCCATTCACTATGGCCACAGACCACCTGAAACCTGCAtccaagcagcagcagccaggcaCCAGTGCATTTAAGCTGGTTATCTATGAGCAGGAAAACTTCCAGGGACGCTGCCATGAGCTGACTGGTCCCTGCAACAACCTCCAGGAAGCAGGCGTGGAGAAAGTGGGCTCCATACTGGTGCTGTGTGGACCATGGGTGGGATACGAGCAGAACAACTGTAAGGGGGAGCAGTATGTGTTTGAGAAGGGGGAGTATCCTCGCTGGGATTCCTGGACCAACAGCAGGCGTAGTGACACCATTGTTGCATTCCGCCCGATTAAAGTGGACAGCCAGGAGCACAAGATTGTCCTTTACGAAAACCCCAGCTTCGCGGGGAAGAAGATAGAAATCATAGATGACGATGTCCCCAGCTTTCATGCGCACGGCTACCAGGAGAAGGTCTCCTCTGTTCGGGTTCAGAGTGGCACGTGGGTGGGCTATCAGTATCCAGGCTACAGAGGCTATCAGTACCTGTTTGAAAAGGGGGAGTATAAGGACAGCACTGAGTTCGGAGCCCAGATTCCTCAGATCCAGTCGGTTCGGCGCATCAGAGACATGCAGTGGCATCAGAGGGGTACTTTTCACCCCGTCAACTAAGCTTGTGACTCTTTCCTGTCATGAACCCTGACCTCGCCACGCCTTGCTCCCTTCCAGCACCAACCCCTTTGTCCTTCCATTACACCATACTGCATTTTGATATCTATTGCAGCTGCTGCAGTAGTGACATTCTTtgaagcaaactaataaatcCTTATGGCTTACATTTGA
>XM_039804464.1
GCAGAGTTTCCACCCCTGGGCGTCCCGTATATATTGGGCTGATCGTGCCATCACAAACACACTGGCACAGACAGTTTCATCTTTGCCGATCCATTCACTATGGCCACAGACCACCTGAAACCTGCAtccaagcagcagcagccaggcaCCAGTGCATTTAAGCTGGTTATCTATGAGCAGGAAAACTTCCAGGGACGCTGCCATGAGCTGACTGGTCCCTGCAACAACCTCCAGGAAGCAGGCGTGGAGAAAGTGGGCTCCATACTGGTGCTGTGTGGACCATGGGTGGGATACGAGCAGAACAACTGTAAGGGGGAGCAGTATGTGTTTGAGAAGGGGGAGTATCCTCGCTGGGATTCCTGGACCAACAGCAGGCGTAGTGACACCATTGTTGCATTCCGCCCGATTAAAGTGGACAGCCAGGAGCACAAGATTGTCCTTTACGAAAACCCCAGCTTCGCGGGGAAGAAGATAGAAATCATAGATGACGATGTCCCCAGCTTTCATGCGCACGGCTACCAGGAGAAGGTCTCCTCTGTTCGGGTTCAGAGTGGCACGTGGGTGGGCTATCAGTATCCAGGCTACAGAGGCTATCAGTACCTGTTTGAAAAGGGGGAGTATAAGGACAGCACTGAGTTCGGAGCCCAGATTCCTCAGATCCAGTCGGTTCGGCGCATCAGAGACATGCAGTGGCATCAGAGGGGTACTTTTCACCCCGTCAACTAAGCTTGTGACTCTTTCCTGTCATGAACCCTGACCTCGCCACGCCTTGCTCCCTTCCAGCACCAACCCCTTTGTCCTTCCATTACACCATACTGCATTTTGATATCTATTGCAGCTGCTGCAGTAGTGACATTCTTtgaagcaaactaataaatcCTTATGGCTTACATTTGA

Function

symbol description
crybb2 Predicted to be a structural constituent of eye lens. Predicted to be involved in lens development in camera-type eye and visual perception. Is expressed in eye and lens. Human ortholog(s) of this gene implicated in cataract and cataract 3 multiple types. Orthologous to human CRYBB2 (crystallin beta B2).

NR:

description
PREDICTED: beta-crystallin B2

GO: NA

KEGG:

id description
K23482 CRYB; beta-crystallin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804463.1 True 910 mRNA 0.52 6 14317597 14319518
XM_039804464.1 False 897 mRNA 0.52 6 14317597 14319511

Neighbor

gene id symbol gene type direction distance location
ctu1 ctu1 coding downstream 207 14314594 ~ 14317390 (-)
LOC120560975 pxn,LOC102314602,LOC102784766,LOC102212913,LOC101475765 coding downstream 5252 14289002 ~ 14312345 (-)
LOC120560399 LOC103369226,LOC100702093 coding downstream 57358 14255697 ~ 14260239 (-)
LOC120560956 LOC103141353,LOC103469718,LOC100701549,LOC106929229 coding downstream 68786 14246483 ~ 14248811 (-)
htr7c htr7,LOC104934772,LOC100705941,LOC102292089 coding downstream 175339 14107403 ~ 14142258 (-)
LOC120561371 crybb3,LOC103469711,LOC102784487 coding upstream 5412 14324930 ~ 14327512 (-)
rnf10 rnf10,LOC102784202 coding upstream 45704 14365222 ~ 14374233 (-)
pop5 pop5 coding upstream 55138 14374656 ~ 14376857 (-)
hnf1a hnf1a coding upstream 73089 14392607 ~ 14399967 (-)
LOC120561207 NA coding upstream 125945 14445463 ~ 14448015 (-)
G61425 NA non-coding downstream 3665 14313595 ~ 14313932 (-)
G61423 NA non-coding downstream 31710 14284175 ~ 14285887 (-)
G61422 NA non-coding downstream 35249 14281851 ~ 14282348 (-)
LOC120560401 atp5ib,atp5i,LOC106580450 non-coding downstream 63094 14252253 ~ 14254503 (-)
G61404 tnks non-coding downstream 84159 14219347 ~ 14233438 (-)
G61559 NA non-coding upstream 68005 14387523 ~ 14387739 (-)
G61564 msi1,LOC102299939,LOC108239862,LOC107687968,LOC107550984,LOC107712472 non-coding upstream 91879 14411397 ~ 14418905 (-)
G61566 NA non-coding upstream 97657 14417175 ~ 14423811 (-)
LOC120561033 NA non-coding upstream 141408 14460926 ~ 14466354 (-)
G61586 NA non-coding upstream 165724 14485242 ~ 14485537 (-)
G61264 NA other downstream 728265 13589039 ~ 13589332 (-)
LOC120561038 LOC102778062,LOC101486272,LOC102199534,LOC108245630 other downstream 1762312 12293707 ~ 12555285 (-)
LOC120561001 whrn,LOC102797690 other downstream 2255951 11901650 ~ 12061646 (-)
abca2 abca2 other downstream 2723937 11285385 ~ 11593660 (-)
G60715 NA other downstream 3127856 11189142 ~ 11189741 (-)
si:ch73-138n13.1 LOC102794857,LOC107084631 other upstream 8633 14328151 ~ 14364326 (-)
trnaa-agc_14 NA other upstream 619457 14938975 ~ 14939047 (-)
trnaa-agc_15 NA other upstream 624978 14944496 ~ 14944568 (-)
trnae-cuc_15 NA other upstream 629241 14948759 ~ 14948830 (-)
trnas-gcu NA other upstream 631984 14951502 ~ 14951583 (-)

Expression


Co-expression Network