nelfb (nelfb,LOC102791926)


Basic Information

Item Value
gene id nelfb
gene name nelfb,LOC102791926
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 12652618 ~ 12669126 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804465.1
ATGTTCGCGGGGCTGCCTGAGCTCGGGATATCCAACGGCGAGGATCTTAAAGAAACACTCACCAACTGTACTGAGCCTCTGAAAGCCATTGATCAGTTTCAGATGGAAAATGGCATCCTGCTGCCGACCCTCCAGTCTGCTCTTCCCTTCCTCGACCTCCATGGAACGCCTCGGCTGGAGTTCCACCAGTCTGTCTTTGACGAGCTTCGAGACAAGCTGATGGAGCGAGTCGCCACCATTGCAGAGGGCAAGGAGGAGGACAGATATGGGAAGCTTGAAGAGCTGCTGGAGAAGAGCTTTCCCCTTGTCAAAATGCCATCCATTCAGCCAGTGGTAATGCAGGTGCTGAAGCATCTACCCAAGGTGCCAGAGAAGAAACTGAAGATGGTGATGGCTGACAAGGAGTTGTACAAGGTGTGTGCTGTGGAGGTGAAAAGGCAGATCTGGCAGGACAACCAGGCTCTATTTGGGGATGAAGTCTCACCCCTCCTCAAGCAGTACATTGTGGAGAAGGAAGCAGCTCTGTTCAGCAGCGACCTCTCCATCCTGCACAATTTCTTCAGCCCTTCCCCCAAAACACGACGCCAGGGCGAGGTGGTCCTGAAGCTGACACAGATGATTGGAAAGAACGTGAAGCTATACGACATGGTGCTGCAGTTTTTACGAACACTCTTCCTGCGAACGCGAAATGTCCACTACTGCACACTGAGAGCAGAGCTGTTGATGTCTCTTCACGACCTGGACATCAGCGAGATCTGCTCTGTGGACCCTTGCCATAAGTTCACTTGGTGTTTGGACGCTTGCATCCGTGAGAAGTTTGTGGACGGCAAGCGAGCCAGAGAGCTGCAAGGTTTCCTAGATGGAGTGAAGAAAGGACAAGAGCAAGTCCTCGGGGACCTGTCCATGATCCTGTGTGACCCGTTTGCTTGTAACACCCTGGTCCTGAGTATCATGAGGAACCTGCAAGAGCTGCTGAGTCAGGACGCTTTACCCAGGGACAGTCCAGACTtgatgctgctgctgaggatgctGTCACTTGGTCAAGGGGCGTGGGACATGATTGACAGCCAGGTCTTCAAAGAGCCTCGTTTGGATCTGGAAGTGGTGACCCGCTTCCTGCCTGCCATGATGTCAGTGGTTGTTGACGATCACACCTTAAATGTAGAACAGAAGCTTCCCAATGAGGAGAAGAGTTCGTTGTCATACCCCACCACCCTGCCAGATGCCTTCAACAGGTATCTGCAGGAGAACAGAGTGGCCTGTGAAATGGGTCTCTACTACGTCCTCCACATCGCCAAACTGAGGAACAAGAACACCTTACAGAGGTTACTACCTGCCCTGGTGGAGACCTACAATGACATGGCCTTTGGTGACATCTTCCTGCACCTGCTGACCGGACACCTCACCCTGCTCTCTGATGAGTTTGGATCCGAAGACTTTTGTTCAGTTGTCTTTGATGGCTTTCTTCTTACTTCTTTTTCCAGTAAAGAGAACGTCCACAGACACACCCTCCGGATGTTGCTGCATCTACACCACAAAGTGCTGCCATCGTACATGGAAACCTTGATGAAAACTCTCGAACCTCCAAAGCAGAGCTGCGAGCCAGTGAAGGAGCTGTACACCCAGCTGACGGAGAAGCTGGATGCACAGAAGAAGAGCCCTCCACCAGCAGATGAAACTCCATCTCTGGACCTGGGGCTGCACCCAGTGACTGTCCCCACCACTGCCTCCACCCCAAGCACGCCTCTCTGAGACACAGCAGAAACACATCAGTGACTGACTGTAAATGCAGCCACCAGTTTGGCTCGAGAATTTTCAAAAAGACTGGACATTTTACATTGTTGTTTGTCCTATGGTTTGTTTCATGGAGATTTTTCTTTAGTTGTTTATCCCTGATAGGCTATTTCTGCTCTAGTTCAGCAGCCATCTGTTTTTCTTCAAAGGAAGGTGTTACCTTTCTAAACTTTGGTCTCGCGTTATTGTCAGAATATAAAGAATCTTAATATGTAA

Function

symbol description
nelfb Acts upstream of or within positive regulation of hematopoietic stem cell differentiation. Predicted to be located in nucleus. Predicted to be part of NELF complex. Orthologous to human NELFB (negative elongation factor complex member B).

NR:

description
negative elongation factor B

GO:

id name namespace
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K15180 COBRA1, NELFB; negative elongation factor B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804465.1 True 2010 mRNA 0.51 13 12652618 12669126

Neighbor

gene id symbol gene type direction distance location
LOC120561146 LOC104923795 coding downstream 9462 12641855 ~ 12643156 (-)
arrdc1a LOC103353853,LOC104923796 coding downstream 17495 12610416 ~ 12635123 (-)
ehmt1a NA coding downstream 51626 12557567 ~ 12600992 (-)
LOC120560512 NA coding downstream 358830 12253167 ~ 12293788 (-)
man1b1b LOC103359688 coding downstream 432261 12158633 ~ 12220357 (-)
LOC120561416 entpd2 coding upstream 4571 12673697 ~ 12692346 (-)
tubb2b tubb2b,tubb4b,LOC103024866,LOC101061694,LOC105901187 coding upstream 252043 12921169 ~ 12923705 (-)
LOC120561256 NA coding upstream 275718 12944844 ~ 12948355 (-)
LOC120561258 NA coding upstream 356289 13025415 ~ 13031917 (-)
LOC120561259 NA coding upstream 367702 13036828 ~ 13038447 (-)
G61085 NA non-coding downstream 6051 12646366 ~ 12646567 (-)
G61084 NA non-coding downstream 7666 12644728 ~ 12644952 (-)
G61083 NA non-coding downstream 8086 12644046 ~ 12644532 (-)
G61051 NA non-coding downstream 48192 12603805 ~ 12604426 (-)
G60955 NA non-coding downstream 495266 12144056 ~ 12157352 (-)
G61124 NA non-coding upstream 117837 12786963 ~ 12788320 (-)
G61119 NA non-coding upstream 167523 12836649 ~ 12874616 (-)
G61128 NA non-coding upstream 168845 12837971 ~ 12846286 (-)
G61151 NA non-coding upstream 305763 12974889 ~ 12975146 (-)
G61154 NA non-coding upstream 308626 12977752 ~ 12978029 (-)
LOC120561038 LOC102778062,LOC101486272,LOC102199534,LOC108245630 other downstream 97333 12293707 ~ 12555285 (-)
LOC120561001 whrn,LOC102797690 other downstream 590972 11901650 ~ 12061646 (-)
abca2 abca2 other downstream 1058958 11285385 ~ 11593660 (-)
G60715 NA other downstream 1462877 11189142 ~ 11189741 (-)
unc5db unc5d other downstream 2133651 10122152 ~ 10518967 (-)
G61264 NA other upstream 919913 13589039 ~ 13589332 (-)
si:ch73-138n13.1 LOC102794857,LOC107084631 other upstream 1659025 14328151 ~ 14364326 (-)
trnaa-agc_14 NA other upstream 2269849 14938975 ~ 14939047 (-)
trnaa-agc_15 NA other upstream 2275370 14944496 ~ 14944568 (-)
trnae-cuc_15 NA other upstream 2279633 14948759 ~ 14948830 (-)

Expression


Co-expression Network