egr3 (egr3)


Basic Information

Item Value
gene id egr3
gene name egr3
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 37812922 ~ 37817376 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804476.1
ATGACAGGGAAACTAGCGGAGAAGCTCCCTCTTACGATGAGCAGTTTAATAAACACGATCCCTGACAGTCTGTACCCAGAAGAGGACATCCCGACGTCTATGAATATTTTCACCAGTACGGAATCTATTAACCACTATTCACAAATGAACACAGATAATATCATGGATCTGGGCATGGGGAGTGAGAAAGCAGCCGCAGATATCCAGTACGGATCCAGCTTCCAGTCCAACCGCAGCGGGCAGACCGTCACGTATCTGGGGAAGTTTGCCTTCGACACGCCCCCGTCAGGCGGCATCGGCGGCTCCGGCTGGTGCTCCGACAACAACATCATCAGCCTGGTGAGCGCCGGGATCCTGGGCGTCTCTCCGTCGCCTGGCACCGTGACGACGCAGACATCCTCCGCGGCCGGCATGGGCGGACAGACGTCAGACATGGAGCAGGTTTACGGTCCGCCGCTGCCCGCCTACTCCACCTGCAGCGACCTGTACCAGGACCAGGTCTCCTTCCACCACAGCCCGGCCACCAGCACGGCTCTCTCCTACCCCGGCAACGACTATCACTCCACATCCAAGGCCTCCATGGACGGCAGCCTGTTCTCCATGATCCCCGACTACAACCTTTTCCACCATCAGGGGGAGGTCGGCGTGATGGAGCACAAGCCCTTCCAGACCATGGACCCCATCCGGGTCAACCCTCCGCCCATCACGCCCCTGGAGACCATCCGGGCGTTCAAAGACAAGCAGCAGATTCACCCGGGTTTCATCGGCGGGCAGCAGCACCCTCCTCAGCACCACCAGGCGCCGCAGACTCTCACCCTCAAGCCCATCCGGCCGCGGAAGTACCCGAACCGTCCCAGCAAGACCCCCGTCCACGAGCGTCCGCACGCCTGCCCGGCGGAGAACTGCGACCGGCGCTTCTCGCGCTCGGACGAGCTCACGCGTCACCTCCGCATCCACACGGGCCACAAGCCCTTCCAGTGCCGAATATGCATGCGCTCCTTCAGCCGGAGCGACCACCTGACCACGCACATCCGCACGCACACGGGGGAGAAACCCTTCTCCTGCGAGTTCTGTGGACGCAAGTTCGCCCGAAGCGACGAGCGAAAGAGACACGCAAAGGTCCACCTGAAACAGAAGGACAAGAAGCCGGCCGACAAGAGCAGCGGGGCGGCCGGGAGCCACAGCTCGCCGCCCAGCTCCTGTGGGGGGCCCACGGTGGGGACGTCATGACCGTCACTACGTGCACTTGGACTGGAGCCTCTCCATGGCCCATAAAGAGACTTATAGGAAGAAGGAATCACGTCCACTTTGAGACAAATAGGTgactcttttcctctcttttccatTCTCCCGGCTCTTTTCAGCTCCTTCTGTTTTGAGATGGATGCCTTTAGTTGAAATAAGAGGAGAAAGGCCGCTACGCCTTTCTTTGTCCAGTAACTCAAAGCCTCGCCTACTCTAACTCAGTGCCGACACACAGAAGGCCAACATGGCCCATCCTGTCCACAAGACCACTGTGTATCTGTAGGTGTTGGTGTggataaagttttttt

Function

symbol description
egr3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Is expressed in hindbrain; myeloid cell; optic tectum; and telencephalon. Orthologous to human EGR3 (early growth response 3).

NR:

description
PREDICTED: early growth response protein 3-like isoform X1

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K12497 EGR3; early growth response protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804476.1 True 1553 mRNA 0.59 2 37812922 37817376

Neighbor

gene id symbol gene type direction distance location
bin3 bin3 coding downstream 5242 37762546 ~ 37807680 (-)
ubl4a ubl4a,LOC101469798,LOC102296658 coding downstream 104786 37700498 ~ 37708136 (-)
si:dkey-32e23.4 LOC103362318 coding downstream 112634 37685932 ~ 37700288 (-)
disp3 disp3,LOC102795715 coding downstream 128743 37655023 ~ 37684179 (-)
LOC120561226 NA coding downstream 257727 37552066 ~ 37555195 (-)
LOC120559987 NA coding upstream 9514 37826890 ~ 37911235 (-)
LOC120561264 rhobtb2 coding upstream 102816 37920192 ~ 37934852 (-)
slc25a37 slc25a37,LOC103371456,LOC107093885,LOC102799379 coding upstream 299762 38117138 ~ 38159292 (-)
entpd4 entpd4 coding upstream 362903 38180279 ~ 38200948 (-)
abhd17b abhd17b,LOC102776450 coding upstream 391067 38208443 ~ 38247605 (-)
G67550 nfu1,LOC101170349,LOC101072203,LOC100703913,LOC103362311,LOC107393744 non-coding downstream 368384 37439315 ~ 37444538 (-)
G67521 NA non-coding downstream 481802 37330638 ~ 37331120 (-)
G67486 NA non-coding downstream 705463 37102992 ~ 37107459 (-)
G67475 NA non-coding downstream 714391 37058238 ~ 37098531 (-)
G67409 NA non-coding downstream 1034787 36777625 ~ 36778135 (-)
G67681 NA non-coding upstream 122505 37939881 ~ 37940295 (-)
G67687 NA non-coding upstream 171856 37989232 ~ 37989542 (-)
G67861 NA non-coding upstream 297870 38115246 ~ 38116233 (-)
G67882 NA non-coding upstream 328620 38145996 ~ 38146799 (-)
G67883 NA non-coding upstream 358349 38175725 ~ 38175961 (-)
G67577 NA other downstream 258155 37535859 ~ 37554767 (-)
G67523 NA other downstream 467839 37344461 ~ 37345083 (-)
adrb3a adgra2,LOC104963277 other downstream 486521 37229742 ~ 37326401 (-)
G67483 pdlim2,LOC104963286,LOC103470528,LOC100702294 other downstream 661276 37098792 ~ 37151646 (-)
arrdc3a arrdc3 other downstream 785129 36971161 ~ 37027793 (-)
LOC120560036 NA other upstream 518712 38336088 ~ 38344796 (-)
LOC120560826 pitpnb,LOC104952320 other upstream 1592863 39410239 ~ 39461568 (-)
G68717 NA other upstream 2117996 39935372 ~ 39935846 (-)
LOC120560061 NA other upstream 2182630 40000006 ~ 40026743 (-)
ppp2r2aa LOC104921711,LOC103356615,LOC108236503,LOC104961741,LOC106520125 other upstream 2495993 40313369 ~ 40330695 (-)

Expression


Co-expression Network