ctu1 (ctu1)


Basic Information

Item Value
gene id ctu1
gene name ctu1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 14314594 ~ 14317390 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804491.1
CTTCCTGTTTTCCGGGCGAAGAAGAGCTAACGACACATGATGAAACAACATGCCACTTTATCTGGTCGCGTAGCTAACGCTAAGGttgttaaagaaagaaaagttatattttaaaagtagttttcCTAGTGTACTTCATCCCCACATTCTCGATTCGGACCTCGGTTTGTCGTTGTCAAGATGCCTGTCCTGTGCAGTAACTGTGTTGATAAGCGTGCTGTGCTGAAACGTCCAAAAACGGGCCATTCGCTGTGTAAGGAGTGCTTTTTCTGGGCCTTTGAGGAGGAGGTGCATCAGACGATCGTGGCAGCACAGCTGTTCAACTCTGGGGAAATAGTAGGAATTGCTGCCTCGGGTGGAAAGGACTCCACAGTGCTCGCACATATAATGAAGCTTCTAAATGAGCGATACAACTACGGCCTTGAACTTATGCTTCTCTCGGTGGACGAGGGAATCTCTGGTTACCGAGATGACTCCTTGGAGACAGTAAAAAGGAATCAGCAACAGTATGAGCTGCCACTGAAGATTGTGTCGTATGAGGAGCTGTATGGCTGGACTATGGATGCTATAGTGAAGCAGGTGGGACTGAAAAATAACTGCACCTTCTGTGGAGTGTTCAGAAGGCAGGCATTAGACAGAGGAGCCATCATGCTGAAAGTGGACAAGATATGTACAGGTCACAATGCTGACGACGTGGCGGAGACTGTTTTGATGAACGTCTTGCGAGGGGACATAGCACGTCTGCGCCGCTGCACTGCCATTTCCACAGCCAGTGAAGGTGAAGGGGTCGTGCCGCGCTGCAAGCCCCTCAAATATGCGTATGAGAAAGAGATTGTTCTCTACGCTTACTTTAAGAAGTTGGACTACTTTTCCACTGAATGTATCTACTCTCCCAATGCTTATCGTGGCCATGCAAGGACCTTTTTAAAGGACCTGGAGAGCGTAAGGCCTAGCTCCATAATGGATATCATCCACTCAGGGGAGAACCTGTCGGTGCGGGAGGGGGTGAAGATGCCTGTGCAGGGAACCTGCAACCGCTGTGGCTACATCTCCAGCCAGGCTCTGTGCAAGTCATGTGTGCTGCTAGAGGGGCTGAACCGAGGTCTGCCGAAGCTGGGCATCGGCAAACACCACCGCCTGCATGACAAAATCCTCTCCCAGCAGCCCCTTActgagaaggaggagaggaagctgAAATCAACAGACTTTTGACAATTATTATCCTCTGTTTTATTTGACATAAGACTTTAAGATTTTAGAATAAACCATATTTGTGTCTTTTACAgttatttgttttcatttggcATCAATTTAATATGTATTGAAAGTTGGCATGGAACCTCTCAGACCAGTGAAGCATCTTCACAGCGTAGAAAGTCCATTCACTGCTGTTTTACAGCTGATAACCAGGAATCACTGAGATACTATTTACACATACTTTCCAAtggtttttatatatttatatacatacatacatacatctctctctctggggaGGATATGATGACAGTTGTGATCACATTCCAAGATGTTTTATGAACTCTAATTTAATAAATGCATTGTCCAGTA
>XM_039804492.1
ACTAGGTTGTGCTGCAGGGGCTACCGACTGGCGTCACTTCCTGTTTTCCGGGCGAAGAAGAGCTAACGACACATGATGAAACAACATGCCACTTTATCTGGTCGCGTAGCTAACGCTAAGTCAAGATGCCTGTCCTGTGCAGTAACTGTGTTGATAAGCGTGCTGTGCTGAAACGTCCAAAAACGGGCCATTCGCTGTGTAAGGAGTGCTTTTTCTGGGCCTTTGAGGAGGAGGTGCATCAGACGATCGTGGCAGCACAGCTGTTCAACTCTGGGGAAATAGTAGGAATTGCTGCCTCGGGTGGAAAGGACTCCACAGTGCTCGCACATATAATGAAGCTTCTAAATGAGCGATACAACTACGGCCTTGAACTTATGCTTCTCTCGGTGGACGAGGGAATCTCTGGTTACCGAGATGACTCCTTGGAGACAGTAAAAAGGAATCAGCAACAGTATGAGCTGCCACTGAAGATTGTGTCGTATGAGGAGCTGTATGGCTGGACTATGGATGCTATAGTGAAGCAGGTGGGACTGAAAAATAACTGCACCTTCTGTGGAGTGTTCAGAAGGCAGGCATTAGACAGAGGAGCCATCATGCTGAAAGTGGACAAGATATGTACAGGTCACAATGCTGACGACGTGGCGGAGACTGTTTTGATGAACGTCTTGCGAGGGGACATAGCACGTCTGCGCCGCTGCACTGCCATTTCCACAGCCAGTGAAGGTGAAGGGGTCGTGCCGCGCTGCAAGCCCCTCAAATATGCGTATGAGAAAGAGATTGTTCTCTACGCTTACTTTAAGAAGTTGGACTACTTTTCCACTGAATGTATCTACTCTCCCAATGCTTATCGTGGCCATGCAAGGACCTTTTTAAAGGACCTGGAGAGCGTAAGGCCTAGCTCCATAATGGATATCATCCACTCAGGGGAGAACCTGTCGGTGCGGGAGGGGGTGAAGATGCCTGTGCAGGGAACCTGCAACCGCTGTGGCTACATCTCCAGCCAGGCTCTGTGCAAGTCATGTGTGCTGCTAGAGGGGCTGAACCGAGGTCTGCCGAAGCTGGGCATCGGCAAACACCACCGCCTGCATGACAAAATCCTCTCCCAGCAGCCCCTTActgagaaggaggagaggaagctgAAATCAACAGACTTTTGACAATTATTATCCTCTGTTTTATTTGACATAAGACTTTAAGATTTTAGAATAAACCATATTTGTGTCTTTTACAgttatttgttttcatttggcATCAATTTAATATGTATTGAAAGTTGGCATGGAACCTCTCAGACCAGTGAAGCATCTTCACAGCGTAGAAAGTCCATTCACTGCTGTTTTACAGCTGATAACCAGGAATCACTGAGATACTATTTACACATACTTTCCAAtggtttttatatatttatatacatacatacatacatctctctctctggggaGGATATGATGACAGTTGTGATCACATTCCAAGATGTTTTATGAACTCTAATTTAATAAATGCATTGTCCAGTA

Function

symbol description
ctu1 Predicted to enable tRNA binding activity. Predicted to be involved in tRNA wobble position uridine thiolation. Predicted to act upstream of or within tRNA processing. Predicted to be located in cytosol. Predicted to be part of cytosolic tRNA wobble base thiouridylase complex. Orthologous to human CTU1 (cytosolic thiouridylase subunit 1).

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K14168 CTU1, NCS6; cytoplasmic tRNA 2-thiolation protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804491.1 True 1569 mRNA 0.46 3 14314594 14317354
XM_039804492.1 False 1514 mRNA 0.47 3 14314594 14317390

Neighbor

gene id symbol gene type direction distance location
LOC120560975 pxn,LOC102314602,LOC102784766,LOC102212913,LOC101475765 coding downstream 2249 14289002 ~ 14312345 (-)
LOC120560399 LOC103369226,LOC100702093 coding downstream 54355 14255697 ~ 14260239 (-)
LOC120560956 LOC103141353,LOC103469718,LOC100701549,LOC106929229 coding downstream 65783 14246483 ~ 14248811 (-)
htr7c htr7,LOC104934772,LOC100705941,LOC102292089 coding downstream 172336 14107403 ~ 14142258 (-)
LOC120559998 NA coding downstream 342458 13963143 ~ 13972136 (-)
crybb2 crybb2,LOC108234953,LOC100703162 coding upstream 207 14317597 ~ 14319518 (-)
LOC120561371 crybb3,LOC103469711,LOC102784487 coding upstream 7540 14324930 ~ 14327512 (-)
rnf10 rnf10,LOC102784202 coding upstream 47832 14365222 ~ 14374233 (-)
pop5 pop5 coding upstream 57266 14374656 ~ 14376857 (-)
hnf1a hnf1a coding upstream 75217 14392607 ~ 14399967 (-)
G61425 NA non-coding downstream 662 14313595 ~ 14313932 (-)
G61423 NA non-coding downstream 28707 14284175 ~ 14285887 (-)
G61422 NA non-coding downstream 32246 14281851 ~ 14282348 (-)
LOC120560401 atp5ib,atp5i,LOC106580450 non-coding downstream 60091 14252253 ~ 14254503 (-)
G61404 tnks non-coding downstream 81156 14219347 ~ 14233438 (-)
G61559 NA non-coding upstream 70133 14387523 ~ 14387739 (-)
G61564 msi1,LOC102299939,LOC108239862,LOC107687968,LOC107550984,LOC107712472 non-coding upstream 94007 14411397 ~ 14418905 (-)
G61566 NA non-coding upstream 99785 14417175 ~ 14423811 (-)
LOC120561033 NA non-coding upstream 143536 14460926 ~ 14466354 (-)
G61586 NA non-coding upstream 167852 14485242 ~ 14485537 (-)
G61264 NA other downstream 725262 13589039 ~ 13589332 (-)
LOC120561038 LOC102778062,LOC101486272,LOC102199534,LOC108245630 other downstream 1759309 12293707 ~ 12555285 (-)
LOC120561001 whrn,LOC102797690 other downstream 2252948 11901650 ~ 12061646 (-)
abca2 abca2 other downstream 2720934 11285385 ~ 11593660 (-)
G60715 NA other downstream 3124853 11189142 ~ 11189741 (-)
si:ch73-138n13.1 LOC102794857,LOC107084631 other upstream 10761 14328151 ~ 14364326 (-)
trnaa-agc_14 NA other upstream 621585 14938975 ~ 14939047 (-)
trnaa-agc_15 NA other upstream 627106 14944496 ~ 14944568 (-)
trnae-cuc_15 NA other upstream 631369 14948759 ~ 14948830 (-)
trnas-gcu NA other upstream 634112 14951502 ~ 14951583 (-)

Expression


Co-expression Network