lrrtm4l2 (LOC104959582,LOC103353626)


Basic Information

Item Value
gene id lrrtm4l2
gene name LOC104959582,LOC103353626
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 2353073 ~ 2356270 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804524.1
gggggggggcatgcaCCGCTGCAGAAAACTTGCGTATATTTGATTTTAGGTTGTCTAAATTGAAGACACAAGTGATGCTCGGTGTGTGGATCGACTCGGAGGCTGCATGAACTGCGATTTTTGCCATCTGAGATCCGTTTAATGTGCTCTTTATTCCAGGAGGATTACTCCTTCCCTCAGGAACGATGGGTTCTGTGATGTTGGACTGGAGGTTATCATGTCTTCTTCTGCAGGCAGctgttctgctgctgctcagCAAGGGGGAGAGGATGTGCCCTGCGAGTTGCCGCTGCGAAGGAAAGATTGTTTATTGCGAGTCGGGCATCTTCCAAGCCATCCCAGAAAACATCACCACGGGGTGCCAAGGTCTGTCTCTGCGCTACAACAGCCTGCTGGTTCTGTTGCCGTACCAGTTCGCTCACCTTAATCAGCTTATCTGGCTTTATTTGGACCACAACTCCATCAGAGATATAGATGCTTTAGCCTTTCATGGTGTGCGCAGGCTCAAAGAACTCATCCTCAGCTCCAACAAAATAACTCATCTGCACAACAACACATTCGGTGCCATACCAAACCTGCGGAATCTGGACTTGTCCTACAATCAGCTGCAGTCTCTGCAGCCAGGGCATTTTTATGGTCTGCGCAAGCTACAAAATCTCCACCTTCGATCTAATGGCCTGAAACAGATCATCATCCGTACGTTTCTGGAATGCCGCAGCCTGGAGTTTCTGGACTTGGGTTACAATCGCTTGCGGAGCCTCACCCGCACAACCTTCTTAGGGCTGTTCAAGTTGAAAGAACTTCATTTAGAGCACAATCAATTTTCCAGGATTAATTTCTTCATTTTCCCGCGCCTTACAAACCTCCAGGCTCTTTATTTGCAATGGAACCGCATACGATCCATCAATCAAGGCGTGCCTTGGACCTGGCACAAACTACAGAAATTGGACCTGTCAGGGAATGAAATCCAAATCTTGGACCCGGCAGTTTTCCAGTGTATGCCGAACTTACAAATACTCAACCTCGAATCGAACAAGCTCAGTAGCGTGCCTGTGAAAGCCGTGGCAGCGTGGACCTCGCTAATCACCGTCAGCCTGGCAGGTAACGCCTGGGACTGCAGCCCCAGCATCTGCCCGCTCATGGGATGGCTCCGAGGCTTCAGAGACTCCAAGGACATCAGCATGATATGCAGCAGCCCAAAGTCTGTGCAGGGCGAACGAGTCGTGGATGTGGTGAAGAATCACTCGACGTGTGCGGACGTCTCAAATGATTTCTTAACCACCGCTCTCATCGTTCTGACTTCCACCCAAGTTGTGAACGTCACGACCTACCTCTCTCCCTCTGGTGTTACACACCCTGCGACTGAGTCACCTGTACAGAGGGTAACCCCATGGCCTGTCCGTCCTAGTGGGACAAACAGGAAGACAAACATGAGCTCCACATCGCCCATCTCCCCTGAACCTACATCGTTTATCCCAGAGCTGCAGTTTGAACATATggctttccataaaatcattgCAGGCAGCGTAGCCCTGTTCCTGTCAGTGGCATTGATCCTCTTGGTTATTTATGTGTCCTGGAGGCGCTACCCCAACACCATGaggcagctgcagcagcactcAGTCAACCATAAGCGCAGGAAAAAGGCCCGCAAGCAGGAGCAGGACCTTAACTCTCAGTTGCAAGAGTACTACCTGAGCTACCATTCAAACTCTGAGACGATGGACTCTTTGGTGAACGAGACAAGGCCGTGCACGTGTACCATTTCAGGATCCATCGAATGTGAGGTCTGAGGTGGCAATTCCACCTTACAGGACTCAAAGTGCAATTGCTTAGCAGAGGTAAATTGTTTTTCCACAAGATGAAGTGCTTTTATCTCCACTGTGAGATGATTCTGCTGCACTGAAGGAACTACTTAGGGGCATAGTACAATACCATGATgtgcacagagacaaagactgcAACGGAGAGATATATTCGGAGCTAATTATCCCTCTGACTGACACCAGAACAATGGCGGGGTCAGCCAGGTTAGCTGTGTATGATCTAAAGTAACGCCTGGACCTCTGCTGCAGCACACGTCCGCCCTGTAGAGAGACTGACCATATTCTTAGTCAAACTATTTCGCCATAGAACATTCAAACCAACAAAGCCACTTTTTACTTGCTAGTTTTGATTTTTCTTATGTAGCTTGTGAAACATTtgggatgtatgtgtgtgttcttatGGAGTCTCCTGGTTTACTGACTTCTGGTTGGAAGAGTTACAGCGTTGCACCTTATTCTCACAAAAtgctagggatgtaacgatgcatcgtgAACCGGTAACAAATCGATATATAAATGTGATTGATGATTACAACCGGTTGAgataaaaacgaaaaaaaaagacaacctaCTCTTGACttcacttgtttgacttcagactTCACTACGTCTTCTTAGTTCATTTATTTGAAGAGATTTTTCTTCCTGTTTATTTAGTCATTTTGATattagattttttgttttgaaaaagattattattaatttttgatgtttaatgtttgagataaaatacaatttcagttttgcacttttgataagagtacacatctgttgttttgcacagtttatataaGTAAAGGAATGTTTTCCTgtcattctgttaaaaaaaaaattaaaaaaaacatgagaaaatcGTGATCGTATCGAATCGTGAGTTGAgtgtatcgttacatccctacaaGTTACTATGTGTCCAGTTAAACTGTTCTGCATTTGATGGTGCACAAACTAGAAGTAGCACGACcaaacaaagtgtgtgtgggg

Function

NR:

description
PREDICTED: leucine-rich repeat transmembrane neuronal protein 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804524.1 True 2810 mRNA 0.46 2 2353073 2356270

Neighbor

gene id symbol gene type direction distance location
vsig8b NA coding downstream 22250 2324986 ~ 2330823 (-)
LOC120560449 NA coding downstream 33797 2318287 ~ 2319276 (-)
cabin1 cabin1 coding downstream 90259 2217592 ~ 2262814 (-)
tbx16 LOC104928806,LOC103353632 coding downstream 136362 2207405 ~ 2216711 (-)
npy8br LOC104958550,LOC104939448 coding downstream 173186 2178275 ~ 2179887 (-)
LOC120560021 NA coding upstream 148202 2504472 ~ 2508814 (-)
LOC120560452 LOC104959125 coding upstream 180948 2537218 ~ 2537559 (-)
LOC120560454 NA coding upstream 195158 2551428 ~ 2552694 (-)
ggt5a ggt5 coding upstream 262945 2619215 ~ 2627761 (-)
si:ch211-170d8.2 NA coding upstream 310992 2667262 ~ 2671095 (-)
G58560 NA non-coding downstream 18051 2334746 ~ 2335022 (-)
G58559 NA non-coding downstream 18884 2333979 ~ 2334189 (-)
LOC120561446 NA non-coding downstream 170345 2179896 ~ 2182728 (-)
G58529 NA non-coding downstream 179753 2172439 ~ 2173320 (-)
G58521 NA non-coding downstream 206521 2146122 ~ 2146552 (-)
G58588 NA non-coding upstream 120002 2476272 ~ 2479608 (-)
LOC120561196 NA non-coding upstream 134997 2491267 ~ 2491794 (-)
G58596 NA non-coding upstream 161685 2517955 ~ 2518201 (-)
G58625 NA non-coding upstream 200375 2556645 ~ 2556863 (-)
G58678 NA non-coding upstream 359631 2715901 ~ 2716316 (-)
ankrd39 LOC103353637,LOC100700369 other downstream 213430 2137796 ~ 2139643 (-)
rimbp2 rimbp2,LOC107081823,LOC108247306,LOC103353655 other downstream 695025 1532053 ~ 1658048 (-)
LOC120560045 NA other downstream 2328124 17589 ~ 24949 (-)
LOC120560995 NA other upstream 193776 2550046 ~ 2551366 (-)
ggt1a ggt1,LOC102775580,LOC108234964 other upstream 221605 2577875 ~ 2592746 (-)
si:ch211-107p11.3 LOC103353652,LOC102075650,LOC108234931,LOC104950460 other upstream 329621 2685891 ~ 2689087 (-)
LOC120561394 LOC107097799,LOC103353613,LOC101077666 other upstream 334340 2690610 ~ 2692543 (-)
LOC120561349 donson,LOC102310661 other upstream 477918 2834188 ~ 2846607 (-)

Expression


Co-expression Network